Wall clock time and date at job start Wed Apr 1 2020 00:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47204 * 2 1 4 4 O 1.42900 * 109.47346 * 179.97438 * 3 2 1 5 5 C 1.42898 * 114.00224 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46959 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00589 * 0.02562 * 6 5 4 8 8 N 1.34787 * 119.99510 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99622 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.57685 * 300.15990 * 9 8 6 11 11 C 1.53118 * 109.52172 * 179.97438 * 9 8 6 12 12 C 1.53036 * 109.28068 * 297.74897 * 11 9 8 13 13 N 1.46843 * 109.52229 * 300.82162 * 12 11 9 14 14 C 1.46902 * 110.99818 * 185.83572 * 13 12 11 15 15 C 1.50702 * 109.47027 * 169.99758 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46867 * 90.00263 * 22 20 18 24 24 H 1.48501 * 109.47216 * 210.00120 * 22 20 18 25 25 H 1.48499 * 109.47135 * 330.00462 * 22 20 18 26 26 C 1.46843 * 111.20082 * 61.74351 * 13 12 11 27 27 C 1.53038 * 109.52070 * 298.25410 * 26 13 12 28 28 H 1.08999 * 109.46827 * 60.00630 * 1 2 3 29 29 H 1.09000 * 109.47010 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47121 * 300.00142 * 1 2 3 31 31 H 1.09001 * 109.47815 * 239.99631 * 2 1 3 32 32 H 1.09006 * 109.46991 * 119.99721 * 2 1 3 33 33 H 1.08998 * 109.47197 * 59.99905 * 3 2 1 34 34 H 1.08999 * 109.46714 * 299.99439 * 3 2 1 35 35 H 1.09005 * 109.46981 * 60.00159 * 5 4 3 36 36 H 1.09002 * 109.47206 * 300.00474 * 5 4 3 37 37 H 0.97000 * 119.99783 * 359.97438 * 8 6 5 38 38 H 1.09004 * 109.46761 * 299.84173 * 10 9 8 39 39 H 1.08996 * 109.47405 * 59.83910 * 10 9 8 40 40 H 1.08998 * 109.47484 * 179.84685 * 10 9 8 41 41 H 1.08995 * 109.50555 * 177.80779 * 11 9 8 42 42 H 1.08997 * 109.53676 * 57.71198 * 11 9 8 43 43 H 1.08996 * 109.46465 * 180.80442 * 12 11 9 44 44 H 1.09001 * 109.45935 * 60.83442 * 12 11 9 45 45 H 1.09004 * 109.47131 * 50.00001 * 14 13 12 46 46 H 1.09000 * 109.47732 * 290.00112 * 14 13 12 47 47 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 48 48 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.46379 * 58.26863 * 26 13 12 50 50 H 1.09000 * 109.46577 * 178.24622 * 26 13 12 51 51 H 1.09001 * 109.50668 * 299.24264 * 27 26 13 52 52 H 1.09001 * 109.53577 * 179.13941 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5525 2.6289 0.0014 7 8 6.0741 1.5341 0.0022 8 7 6.3164 3.7394 0.0017 9 6 7.7768 3.6237 0.0024 10 6 8.2301 2.8613 1.2491 11 6 8.4009 5.0219 0.0020 12 6 7.9933 5.7568 -1.2770 13 7 8.4511 4.9966 -2.4469 14 6 8.1994 5.7395 -3.6889 15 6 8.8949 5.0518 -4.8354 16 8 9.5366 4.0417 -4.6374 17 7 8.7987 5.5556 -6.0818 18 6 9.4267 4.9268 -7.1257 19 1 9.9981 4.0274 -6.9494 20 6 9.3281 5.4464 -8.4105 21 7 8.6332 6.5410 -8.6250 22 14 10.1843 4.5900 -9.8328 23 1 9.2654 3.5905 -10.4342 24 1 10.5639 5.5940 -10.8591 25 1 11.4044 3.9047 -9.3357 26 6 7.8284 3.6675 -2.4935 27 6 8.2311 2.8702 -1.2508 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9562 -0.8900 35 1 3.7282 3.2894 0.8897 36 1 3.7289 3.2884 -0.8903 37 1 5.8992 4.6151 0.0007 38 1 7.9111 3.4009 2.1409 39 1 7.7854 1.8662 1.2482 40 1 9.3165 2.7738 1.2466 41 1 9.4867 4.9359 0.0418 42 1 8.0480 5.5789 0.8699 43 1 8.4476 6.7475 -1.2871 44 1 6.9081 5.8547 -1.3094 45 1 8.5821 6.7553 -3.5886 46 1 7.1271 5.7727 -3.8817 47 1 8.2853 6.3632 -6.2402 48 1 8.5646 6.9041 -9.5219 49 1 6.7440 3.7752 -2.5201 50 1 8.1630 3.1407 -3.3871 51 1 9.3143 2.7503 -1.2306 52 1 7.7568 1.8892 -1.2776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499972858.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:34 Heat of formation + Delta-G solvation = -118.420941 kcal Electronic energy + Delta-G solvation = -30725.075362 eV Core-core repulsion = 26531.552075 eV Total energy + Delta-G solvation = -4193.523287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.70484 -38.97561 -38.16685 -37.33513 -35.05998 -34.00186 -33.80523 -32.26236 -31.22192 -30.74210 -29.10568 -28.29416 -26.13226 -25.86504 -24.09060 -23.15054 -22.03685 -21.83011 -20.89137 -19.23446 -19.06652 -17.83673 -17.54730 -16.95922 -16.81177 -16.02498 -15.61816 -15.33106 -15.23622 -15.00285 -14.68471 -14.51076 -14.26809 -13.86656 -13.76636 -13.68173 -13.57981 -13.52605 -12.81262 -12.55525 -12.46188 -12.41032 -12.33675 -12.07517 -12.02493 -11.94431 -11.55136 -11.46984 -11.28355 -11.23926 -11.21263 -11.00225 -10.95361 -10.46525 -10.40437 -10.32645 -10.19675 -10.01190 -9.51625 -9.45298 -9.11766 -8.38107 -7.95149 -7.80021 -6.39968 -3.80461 2.51704 2.61445 3.19285 3.27761 3.34020 3.67496 3.92737 4.01625 4.26739 4.43690 4.58263 4.63302 4.73731 4.77913 4.81721 4.90065 4.94185 4.95369 5.06137 5.09120 5.11841 5.25282 5.29609 5.35331 5.40107 5.53037 5.59152 5.63196 5.67290 5.70538 5.76929 5.79954 5.85861 5.88910 5.89916 5.96074 6.04664 6.15533 6.24515 6.30972 6.44870 6.57833 6.63703 6.76258 7.33536 7.40953 7.48031 7.57303 8.08838 8.15286 8.64151 9.20457 9.56736 10.08888 10.77886 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010495 B = 0.002418 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.377006 B =11578.074930 C =13342.228136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.362 6.362 5 C 0.044 3.956 6 C 0.515 3.485 7 O -0.511 6.511 8 N -0.720 5.720 9 C 0.177 3.823 10 C -0.161 4.161 11 C -0.115 4.115 12 C 0.055 3.945 13 N -0.514 5.514 14 C 0.047 3.953 15 C 0.444 3.556 16 O -0.575 6.575 17 N -0.566 5.566 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.059 3.941 27 C -0.122 4.122 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.396 0.604 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.025 0.975 45 H 0.087 0.913 46 H 0.044 0.956 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.017 0.983 50 H 0.102 0.898 51 H 0.080 0.920 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.757 -1.470 20.962 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.281 6.281 5 C -0.037 4.037 6 C 0.300 3.700 7 O -0.385 6.385 8 N -0.374 5.374 9 C 0.092 3.908 10 C -0.219 4.219 11 C -0.154 4.154 12 C -0.074 4.074 13 N -0.238 5.238 14 C -0.084 4.084 15 C 0.229 3.771 16 O -0.459 6.459 17 N -0.202 5.202 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.069 4.069 27 C -0.161 4.161 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.230 0.770 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.044 0.956 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.036 0.964 50 H 0.120 0.880 51 H 0.098 0.902 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.352 -3.107 20.957 24.524 hybrid contribution -1.269 1.221 -1.019 2.034 sum -13.621 -1.886 19.938 24.220 Atomic orbital electron populations 1.21697 0.94674 1.02347 1.01965 1.21450 0.95586 0.95383 1.03740 1.22638 0.80534 0.98345 1.00184 1.88015 1.19512 1.25129 1.95407 1.22210 0.92100 0.87025 1.02331 1.20126 0.88322 0.84814 0.76723 1.90683 1.74167 1.26504 1.47128 1.46065 1.06959 1.08298 1.76105 1.20462 0.78065 0.96026 0.96291 1.22186 1.01741 1.02048 0.95926 1.21881 1.02585 0.93900 0.96984 1.22091 0.97140 0.97390 0.90770 1.61532 1.58919 1.02718 1.00658 1.21827 0.98417 0.97961 0.90231 1.19754 0.86262 0.87460 0.83607 1.90494 1.45170 1.26468 1.83752 1.41871 1.46460 1.26219 1.05693 1.19695 1.28009 1.09369 0.85558 0.87927 1.25251 0.97590 0.96358 0.98818 1.69611 1.41019 1.20911 1.22946 0.85866 0.79621 0.78631 0.80230 1.20452 1.20956 1.19400 1.22182 0.94717 0.89690 1.00291 1.21983 1.02396 0.99444 0.92232 0.92468 0.91925 0.92591 0.90839 0.91008 0.93292 0.93112 0.90592 0.90427 0.76973 0.93018 0.90400 0.91590 0.89138 0.91165 0.90560 0.95644 0.89440 0.93761 0.77561 0.91937 0.96438 0.87955 0.90174 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.96 6.30 -26.73 -0.17 -1.13 16 3 C 0.06 0.49 5.94 37.16 0.22 0.71 16 4 O -0.36 -4.27 9.88 -55.14 -0.54 -4.81 16 5 C 0.04 0.40 6.42 36.00 0.23 0.63 16 6 C 0.52 6.27 7.33 -10.98 -0.08 6.19 16 7 O -0.51 -8.35 12.71 -14.35 -0.18 -8.53 16 8 N -0.72 -7.25 4.16 -47.49 -0.20 -7.45 16 9 C 0.18 2.04 0.66 -131.70 -0.09 1.95 16 10 C -0.16 -1.79 8.41 37.16 0.31 -1.47 16 11 C -0.12 -1.16 4.93 -26.65 -0.13 -1.30 16 12 C 0.05 0.63 5.30 -3.84 -0.02 0.61 16 13 N -0.51 -8.38 4.40 -236.12 -1.04 -9.42 16 14 C 0.05 0.83 5.45 -4.97 -0.03 0.81 16 15 C 0.44 10.50 7.46 -10.98 -0.08 10.42 16 16 O -0.57 -15.56 13.90 5.55 0.08 -15.49 16 17 N -0.57 -14.37 5.29 -10.96 -0.06 -14.43 16 18 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 22 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.06 1.00 4.96 -3.84 -0.02 0.98 16 27 C -0.12 -1.85 4.71 -26.65 -0.13 -1.98 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.40 2.90 7.47 -40.82 -0.30 2.59 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 1.04 6.16 -51.93 -0.32 0.72 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 44 H 0.03 0.26 7.01 -51.93 -0.36 -0.10 16 45 H 0.09 1.38 7.99 -51.93 -0.41 0.97 16 46 H 0.04 0.73 8.12 -51.93 -0.42 0.30 16 47 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.02 0.29 7.69 -51.93 -0.40 -0.11 16 50 H 0.10 2.19 5.78 -51.93 -0.30 1.89 16 51 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 52 H 0.08 1.43 6.14 -51.93 -0.32 1.11 16 LS Contribution 408.95 15.07 6.16 6.16 Total: -1.00 -34.18 408.95 -8.94 -43.12 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -9.01 Total: 10.59 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 0.15 Total: 7.96 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.57 Total: -55.23 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.65 Total: -28.83 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.18 -8.94 -43.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499972858.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.303 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds