Wall clock time and date at job start Wed Apr 1 2020 00:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47204 * 2 1 4 4 O 1.42900 * 109.47346 * 179.97438 * 3 2 1 5 5 C 1.42898 * 114.00224 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46959 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00589 * 0.02562 * 6 5 4 8 8 N 1.34787 * 119.99510 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99622 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.57685 * 300.15990 * 9 8 6 11 11 C 1.53118 * 109.52172 * 179.97438 * 9 8 6 12 12 C 1.53036 * 109.28068 * 297.74897 * 11 9 8 13 13 N 1.46843 * 109.52229 * 300.82162 * 12 11 9 14 14 C 1.46902 * 110.99818 * 185.83572 * 13 12 11 15 15 C 1.50702 * 109.47027 * 169.99758 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46867 * 90.00263 * 22 20 18 24 24 H 1.48501 * 109.47216 * 210.00120 * 22 20 18 25 25 H 1.48499 * 109.47135 * 330.00462 * 22 20 18 26 26 C 1.46843 * 111.20082 * 61.74351 * 13 12 11 27 27 C 1.53038 * 109.52070 * 298.25410 * 26 13 12 28 28 H 1.08999 * 109.46827 * 60.00630 * 1 2 3 29 29 H 1.09000 * 109.47010 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47121 * 300.00142 * 1 2 3 31 31 H 1.09001 * 109.47815 * 239.99631 * 2 1 3 32 32 H 1.09006 * 109.46991 * 119.99721 * 2 1 3 33 33 H 1.08998 * 109.47197 * 59.99905 * 3 2 1 34 34 H 1.08999 * 109.46714 * 299.99439 * 3 2 1 35 35 H 1.09005 * 109.46981 * 60.00159 * 5 4 3 36 36 H 1.09002 * 109.47206 * 300.00474 * 5 4 3 37 37 H 0.97000 * 119.99783 * 359.97438 * 8 6 5 38 38 H 1.09004 * 109.46761 * 299.84173 * 10 9 8 39 39 H 1.08996 * 109.47405 * 59.83910 * 10 9 8 40 40 H 1.08998 * 109.47484 * 179.84685 * 10 9 8 41 41 H 1.08995 * 109.50555 * 177.80779 * 11 9 8 42 42 H 1.08997 * 109.53676 * 57.71198 * 11 9 8 43 43 H 1.08996 * 109.46465 * 180.80442 * 12 11 9 44 44 H 1.09001 * 109.45935 * 60.83442 * 12 11 9 45 45 H 1.09004 * 109.47131 * 50.00001 * 14 13 12 46 46 H 1.09000 * 109.47732 * 290.00112 * 14 13 12 47 47 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 48 48 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.46379 * 58.26863 * 26 13 12 50 50 H 1.09000 * 109.46577 * 178.24622 * 26 13 12 51 51 H 1.09001 * 109.50668 * 299.24264 * 27 26 13 52 52 H 1.09001 * 109.53577 * 179.13941 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5525 2.6289 0.0014 7 8 6.0741 1.5341 0.0022 8 7 6.3164 3.7394 0.0017 9 6 7.7768 3.6237 0.0024 10 6 8.2301 2.8613 1.2491 11 6 8.4009 5.0219 0.0020 12 6 7.9933 5.7568 -1.2770 13 7 8.4511 4.9966 -2.4469 14 6 8.1994 5.7395 -3.6889 15 6 8.8949 5.0518 -4.8354 16 8 9.5366 4.0417 -4.6374 17 7 8.7987 5.5556 -6.0818 18 6 9.4267 4.9268 -7.1257 19 1 9.9981 4.0274 -6.9494 20 6 9.3281 5.4464 -8.4105 21 7 8.6332 6.5410 -8.6250 22 14 10.1843 4.5900 -9.8328 23 1 9.2654 3.5905 -10.4342 24 1 10.5639 5.5940 -10.8591 25 1 11.4044 3.9047 -9.3357 26 6 7.8284 3.6675 -2.4935 27 6 8.2311 2.8702 -1.2508 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9562 -0.8900 35 1 3.7282 3.2894 0.8897 36 1 3.7289 3.2884 -0.8903 37 1 5.8992 4.6151 0.0007 38 1 7.9111 3.4009 2.1409 39 1 7.7854 1.8662 1.2482 40 1 9.3165 2.7738 1.2466 41 1 9.4867 4.9359 0.0418 42 1 8.0480 5.5789 0.8699 43 1 8.4476 6.7475 -1.2871 44 1 6.9081 5.8547 -1.3094 45 1 8.5821 6.7553 -3.5886 46 1 7.1271 5.7727 -3.8817 47 1 8.2853 6.3632 -6.2402 48 1 8.5646 6.9041 -9.5219 49 1 6.7440 3.7752 -2.5201 50 1 8.1630 3.1407 -3.3871 51 1 9.3143 2.7503 -1.2306 52 1 7.7568 1.8892 -1.2776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499972858.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:33 Heat of formation + Delta-G solvation = -143.886076 kcal Electronic energy + Delta-G solvation = -30726.179613 eV Core-core repulsion = 26531.552075 eV Total energy + Delta-G solvation = -4194.627538 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.71024 -40.35319 -39.37432 -38.43823 -36.36144 -35.71502 -34.60626 -33.37308 -33.13587 -31.84359 -30.34249 -29.01961 -27.67846 -26.50589 -25.78512 -24.27342 -23.03559 -22.51995 -21.82166 -21.03015 -20.15103 -19.86332 -18.40130 -17.84490 -17.60307 -17.49066 -16.80553 -16.60159 -16.41538 -16.16135 -16.03510 -15.69727 -15.46822 -15.26372 -15.25228 -14.83431 -14.55386 -14.38106 -13.99971 -13.95113 -13.50925 -13.38524 -13.21322 -13.09119 -13.04398 -12.95446 -12.87844 -12.86358 -12.54084 -12.42593 -12.35346 -12.14467 -12.10603 -11.84916 -11.80587 -11.66014 -11.48639 -11.36066 -10.68468 -10.50045 -10.31606 -10.03705 -9.95708 -9.12942 -8.46727 -5.94818 1.36577 1.40140 1.52804 1.62005 1.84033 2.06851 2.28165 2.79400 2.98916 3.20040 3.39332 3.61739 3.82245 3.83072 3.95273 4.01467 4.09455 4.21437 4.21939 4.26440 4.30307 4.34308 4.39970 4.49722 4.52212 4.55482 4.55725 4.63019 4.63451 4.79167 4.81746 4.83030 4.86308 4.98004 5.01316 5.12585 5.14510 5.20729 5.21323 5.30134 5.33138 5.35238 5.40963 5.61985 5.91504 6.09956 6.11045 6.31169 6.61801 6.63237 7.13995 7.30841 7.57755 8.14702 8.70694 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010495 B = 0.002418 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.377006 B =11578.074930 C =13342.228136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.056 3.944 4 O -0.401 6.401 5 C 0.044 3.956 6 C 0.507 3.493 7 O -0.562 6.562 8 N -0.705 5.705 9 C 0.182 3.818 10 C -0.155 4.155 11 C -0.107 4.107 12 C 0.051 3.949 13 N -0.532 5.532 14 C 0.060 3.940 15 C 0.438 3.562 16 O -0.616 6.616 17 N -0.575 5.575 18 C -0.331 4.331 19 H 0.075 0.925 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.990 3.010 23 H -0.272 1.272 24 H -0.269 1.269 25 H -0.275 1.275 26 C 0.070 3.930 27 C -0.115 4.115 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.414 0.586 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.050 0.950 45 H 0.116 0.884 46 H 0.065 0.935 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.025 0.975 50 H 0.048 0.952 51 H 0.062 0.938 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.395 1.170 22.500 27.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C -0.020 4.020 4 O -0.321 6.321 5 C -0.035 4.035 6 C 0.294 3.706 7 O -0.440 6.440 8 N -0.360 5.360 9 C 0.096 3.904 10 C -0.213 4.213 11 C -0.145 4.145 12 C -0.076 4.076 13 N -0.257 5.257 14 C -0.071 4.071 15 C 0.226 3.774 16 O -0.502 6.502 17 N -0.213 5.213 18 C -0.460 4.460 19 H 0.093 0.907 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.198 1.198 24 H -0.193 1.193 25 H -0.200 1.200 26 C -0.058 4.058 27 C -0.154 4.154 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.252 0.748 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.130 0.870 43 H 0.114 0.886 44 H 0.068 0.932 45 H 0.134 0.866 46 H 0.082 0.918 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.043 0.957 50 H 0.067 0.933 51 H 0.080 0.920 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.027 -0.399 22.512 26.527 hybrid contribution -0.757 0.363 -1.463 1.686 sum -14.784 -0.036 21.049 25.722 Atomic orbital electron populations 1.21665 0.92868 1.02861 1.02743 1.21489 0.97133 0.95382 1.02469 1.22808 0.78967 0.98571 1.01624 1.87974 1.21452 1.26883 1.95754 1.22348 0.89612 0.86633 1.04893 1.20804 0.89847 0.84370 0.75573 1.90675 1.75304 1.28536 1.49477 1.45902 1.06196 1.08860 1.75062 1.20329 0.79114 0.96745 0.94210 1.22106 1.01759 1.00812 0.96604 1.21879 1.02140 0.92665 0.97811 1.22295 0.98818 0.97630 0.88870 1.61467 1.59949 1.02646 1.01669 1.21713 0.98708 0.98284 0.88428 1.20918 0.85230 0.86801 0.84463 1.90479 1.46794 1.28354 1.84545 1.41933 1.46848 1.26484 1.06037 1.19612 1.29564 1.09585 0.87286 0.90665 1.25993 0.97864 0.96904 1.00512 1.69662 1.41201 1.21389 1.23844 0.84969 0.78336 0.77948 0.77334 1.19782 1.19320 1.19984 1.21888 0.94850 0.90329 0.98726 1.21848 1.01046 0.98697 0.93829 0.92010 0.91618 0.91411 0.92618 0.91857 0.91151 0.92149 0.86942 0.88512 0.74786 0.90584 0.93151 0.91345 0.89880 0.87022 0.88574 0.93229 0.86615 0.91757 0.76995 0.91322 0.95701 0.93306 0.91952 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.91 71.98 0.71 -0.74 16 2 C -0.13 -1.94 6.30 30.59 0.19 -1.75 16 3 C 0.06 0.84 5.94 71.98 0.43 1.27 16 4 O -0.40 -9.19 9.88 -129.94 -1.28 -10.48 16 5 C 0.04 0.73 6.42 71.24 0.46 1.18 16 6 C 0.51 11.85 7.33 87.65 0.64 12.50 16 7 O -0.56 -19.05 12.71 16.01 0.20 -18.84 16 8 N -0.71 -12.48 4.16 -422.55 -1.76 -14.24 16 9 C 0.18 3.91 0.66 3.68 0.00 3.91 16 10 C -0.15 -3.26 8.41 71.98 0.61 -2.66 16 11 C -0.11 -1.77 4.93 30.65 0.15 -1.62 16 12 C 0.05 0.98 5.30 86.33 0.46 1.44 16 13 N -0.53 -16.69 4.40 -900.94 -3.96 -20.65 16 14 C 0.06 2.03 5.45 85.56 0.47 2.49 16 15 C 0.44 21.21 7.46 87.66 0.65 21.86 16 16 O -0.62 -35.01 13.90 -3.07 -0.04 -35.05 16 17 N -0.58 -29.88 5.29 -306.98 -1.62 -31.51 16 18 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 19 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 21 N -0.92 -49.92 13.05 21.66 0.28 -49.64 16 22 Si 0.99 43.79 29.55 68.60 2.03 45.82 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 C 0.07 2.45 4.96 86.33 0.43 2.88 16 27 C -0.12 -3.64 4.71 30.65 0.14 -3.49 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.04 8.14 -2.38 -0.02 1.03 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.41 4.27 7.47 -92.71 -0.69 3.57 16 38 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.05 1.37 6.16 -2.39 -0.01 1.36 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.10 1.57 8.01 -2.39 -0.02 1.55 16 44 H 0.05 0.76 7.01 -2.39 -0.02 0.74 16 45 H 0.12 3.31 7.99 -2.38 -0.02 3.29 16 46 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 47 H 0.40 19.37 7.90 -92.71 -0.73 18.63 16 48 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 49 H 0.02 0.81 7.69 -2.39 -0.02 0.79 16 50 H 0.05 2.23 5.78 -2.39 -0.01 2.22 16 51 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.06 2.16 6.14 -2.39 -0.01 2.15 16 Total: -1.00 -80.14 408.95 -0.04 -80.17 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.50 Total: 35.69 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 6.62 Total: 18.72 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -7.06 Total: -116.03 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: -1.12 Total: -64.37 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -80.14 -0.04 -80.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499972858.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.712 kcal (2) G-P(sol) polarization free energy of solvation -80.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds