Wall clock time and date at job start Wed Apr 1 2020 01:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.80704 * 2 1 4 4 C 1.54949 * 110.74031 * 236.71398 * 2 1 3 5 5 N 1.48118 * 103.25218 * 279.04143 * 4 2 1 6 6 C 1.34776 * 127.03368 * 140.74127 * 5 4 2 7 7 O 1.21285 * 120.00331 * 179.97438 * 6 5 4 8 8 C 1.50704 * 119.99994 * 359.95737 * 6 5 4 9 9 C 1.52997 * 109.47209 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47051 * 60.00257 * 9 8 6 11 11 C 1.52998 * 109.47270 * 180.02562 * 9 8 6 12 12 O 1.42899 * 109.47237 * 300.00115 * 9 8 6 13 13 C 1.47485 * 105.93588 * 320.70449 * 5 4 2 14 14 C 1.54010 * 107.07903 * 25.45059 * 13 5 4 15 15 H 1.09006 * 110.32039 * 239.69709 * 14 13 5 16 16 C 1.52997 * 110.32666 * 117.58800 * 14 13 5 17 17 N 1.46899 * 109.47254 * 66.44951 * 16 14 13 18 18 C 1.46904 * 111.00029 * 179.97438 * 17 16 14 19 19 C 1.50696 * 109.46800 * 180.02562 * 18 17 16 20 20 O 1.21289 * 120.00338 * 0.02562 * 19 18 17 21 21 N 1.34782 * 119.99855 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00193 * 180.02562 * 21 19 18 23 23 H 1.08002 * 120.00238 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00205 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99909 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00181 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47138 * 89.99534 * 26 24 22 28 28 H 1.48502 * 109.46886 * 209.99398 * 26 24 22 29 29 H 1.48495 * 109.47039 * 329.99454 * 26 24 22 30 30 H 1.08994 * 109.47027 * 296.70869 * 1 2 3 31 31 H 1.09001 * 109.46918 * 56.70421 * 1 2 3 32 32 H 1.08996 * 109.47100 * 176.70267 * 1 2 3 33 33 H 1.08994 * 110.66427 * 160.59610 * 4 2 1 34 34 H 1.09002 * 110.80464 * 37.54767 * 4 2 1 35 35 H 1.08998 * 109.47176 * 299.99960 * 8 6 5 36 36 H 1.08997 * 109.46993 * 59.99952 * 8 6 5 37 37 H 1.08997 * 109.47545 * 59.99545 * 10 9 8 38 38 H 1.09001 * 109.47326 * 180.02562 * 10 9 8 39 39 H 1.09003 * 109.47029 * 299.99649 * 10 9 8 40 40 H 1.08997 * 109.47061 * 60.00191 * 11 9 8 41 41 H 1.09008 * 109.47059 * 180.02562 * 11 9 8 42 42 H 1.09001 * 109.47244 * 299.99756 * 11 9 8 43 43 H 0.96696 * 114.00048 * 299.99944 * 12 9 8 44 44 H 1.08997 * 109.91370 * 266.08928 * 13 5 4 45 45 H 1.08998 * 109.91121 * 144.80747 * 13 5 4 46 46 H 1.09002 * 109.47153 * 306.44947 * 16 14 13 47 47 H 1.09001 * 109.46832 * 186.45138 * 16 14 13 48 48 H 1.00908 * 110.99847 * 56.04959 * 17 16 14 49 49 H 1.08995 * 109.47167 * 300.00240 * 18 17 16 50 50 H 1.09003 * 109.46442 * 60.00214 * 18 17 16 51 51 H 0.97000 * 119.99567 * 0.02562 * 21 19 18 52 52 H 0.96998 * 120.00315 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0787 -0.7953 -1.2113 5 7 1.9871 -2.2038 -0.7624 6 6 1.6233 -3.2697 -1.5027 7 8 1.5925 -4.3739 -1.0019 8 6 1.2543 -3.0894 -2.9527 9 6 0.8843 -4.4454 -3.5572 10 6 -0.3059 -5.0347 -2.7976 11 6 0.5103 -4.2625 -5.0295 12 8 2.0002 -5.3323 -3.4564 13 6 2.3762 -2.2016 0.6601 14 6 2.0775 -0.7938 1.2086 15 1 2.9907 -0.3323 1.5844 16 6 1.0253 -0.8674 2.3168 17 7 1.5817 -1.5816 3.4737 18 6 0.5972 -1.6713 4.5603 19 6 1.2027 -2.4080 5.7271 20 8 2.3424 -2.8176 5.6603 21 7 0.4778 -2.6118 6.8450 22 6 1.0288 -3.2815 7.9067 23 1 2.0437 -3.6463 7.8473 24 6 0.2814 -3.4920 9.0590 25 7 -0.9536 -3.0487 9.1312 26 14 1.0319 -4.4053 10.5054 27 1 1.6967 -3.4352 11.4122 28 1 -0.0366 -5.1230 11.2459 29 1 2.0323 -5.3835 10.0079 30 1 -0.3633 0.4619 0.9180 31 1 -0.3633 0.5642 -0.8590 32 1 -0.3633 -1.0259 -0.0591 33 1 3.1145 -0.5225 -1.4132 34 1 1.4603 -0.6319 -2.0940 35 1 0.4034 -2.4126 -3.0297 36 1 2.1023 -2.6700 -3.4940 37 1 -1.1571 -4.3582 -2.8744 38 1 -0.5692 -6.0009 -3.2279 39 1 -0.0390 -5.1651 -1.7488 40 1 1.3585 -3.8429 -5.5703 41 1 0.2463 -5.2285 -5.4600 42 1 -0.3408 -3.5859 -5.1068 43 1 2.7923 -5.0217 -3.9158 44 1 3.4402 -2.4186 0.7543 45 1 1.7935 -2.9439 1.2056 46 1 0.1473 -1.3989 1.9496 47 1 0.7407 0.1416 2.6152 48 1 2.4333 -1.1447 3.7930 49 1 0.3100 -0.6678 4.8742 50 1 -0.2839 -2.2082 4.2088 51 1 -0.4337 -2.2845 6.8983 52 1 -1.4756 -3.1959 9.9354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501111891.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:14 Heat of formation + Delta-G solvation = -122.957869 kcal Electronic energy + Delta-G solvation = -30456.537055 eV Core-core repulsion = 26262.817032 eV Total energy + Delta-G solvation = -4193.720023 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.61033 -39.09958 -38.17879 -37.26425 -35.31240 -33.84178 -32.99469 -32.74229 -31.20717 -30.50113 -28.88805 -27.57732 -26.97420 -26.70600 -24.80647 -23.53041 -22.36590 -20.87373 -19.67275 -19.45399 -19.03795 -17.85542 -17.39676 -16.78461 -16.68751 -16.06544 -15.67289 -15.28890 -15.09205 -14.85318 -14.59400 -14.53829 -14.31554 -13.99083 -13.72438 -13.58636 -13.35789 -13.10463 -12.79095 -12.63618 -12.50155 -12.43786 -12.31474 -12.18137 -12.05282 -11.96799 -11.80370 -11.60647 -11.55058 -11.47316 -11.06813 -11.03784 -10.95355 -10.84050 -10.60012 -10.36670 -10.34729 -10.18713 -9.62300 -9.47942 -8.73275 -8.43066 -8.02857 -7.92715 -6.38820 -3.79410 2.58135 2.81209 3.20261 3.28725 3.35365 3.93464 3.95082 4.03607 4.18827 4.21587 4.33450 4.35271 4.51094 4.61973 4.69254 4.84664 4.95849 5.00225 5.05529 5.09241 5.15283 5.18056 5.24622 5.25538 5.29538 5.31073 5.48744 5.52554 5.53343 5.62458 5.63331 5.71925 5.73744 5.81142 5.84263 5.87169 5.93217 5.99375 6.02443 6.15604 6.25403 6.29860 6.35559 7.22260 7.46077 7.49870 7.58225 7.67850 8.09486 8.16054 8.64498 9.21029 9.57518 10.09140 10.79003 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.002052 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.313543 B =13645.125973 C =14632.799543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 H 0.088 0.912 4 C 0.103 3.897 5 N -0.625 5.625 6 C 0.528 3.472 7 O -0.511 6.511 8 C -0.164 4.164 9 C 0.144 3.856 10 C -0.154 4.154 11 C -0.178 4.178 12 O -0.542 6.542 13 C 0.117 3.883 14 C -0.093 4.093 15 H 0.085 0.915 16 C 0.067 3.933 17 N -0.669 5.669 18 C 0.052 3.948 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.367 0.633 44 H 0.064 0.936 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.030 0.970 48 H 0.348 0.652 49 H 0.042 0.958 50 H 0.085 0.915 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.648 9.439 -28.772 30.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.021 4.021 5 N -0.361 5.361 6 C 0.316 3.684 7 O -0.385 6.385 8 C -0.205 4.205 9 C 0.103 3.897 10 C -0.211 4.211 11 C -0.236 4.236 12 O -0.346 6.346 13 C -0.005 4.005 14 C -0.113 4.113 15 H 0.103 0.897 16 C -0.063 4.063 17 N -0.302 5.302 18 C -0.081 4.081 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.205 1.205 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.213 0.787 44 H 0.082 0.918 45 H 0.111 0.889 46 H 0.093 0.907 47 H 0.048 0.952 48 H 0.168 0.832 49 H 0.060 0.940 50 H 0.103 0.897 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.645 7.445 -28.329 29.298 hybrid contribution 0.111 1.314 0.758 1.521 sum 0.756 8.759 -27.571 28.939 Atomic orbital electron populations 1.21841 0.94218 1.02249 1.02021 1.22280 0.96647 0.98989 0.94113 0.89340 1.22591 1.00892 0.81161 0.97430 1.48914 1.67859 1.07159 1.12122 1.20063 0.77253 0.83240 0.87809 1.90740 1.51404 1.23601 1.72802 1.22458 1.03557 1.00583 0.93878 1.20915 0.88154 0.87265 0.93387 1.22003 0.94632 1.00736 1.03709 1.22521 1.02095 1.02918 0.96032 1.86747 1.22220 1.47750 1.77874 1.22013 1.00589 0.97718 0.80159 1.22120 0.99241 0.95269 0.94677 0.89687 1.22119 0.97162 0.96125 0.90870 1.60071 1.06995 1.56478 1.06636 1.21649 0.95729 0.99003 0.91682 1.19814 0.87537 0.85829 0.84172 1.90524 1.18806 1.55102 1.82181 1.41863 1.15044 1.50431 1.12791 1.19705 0.99950 1.31346 0.91767 0.87925 1.25265 0.95512 0.98076 0.99179 1.69613 1.08623 1.46630 1.29542 0.85851 0.78469 0.79405 0.80535 1.20464 1.20933 1.19384 0.91730 0.92743 0.92254 0.90984 0.90378 0.88389 0.89094 0.92057 0.92209 0.88861 0.92401 0.91372 0.91554 0.78710 0.91766 0.88929 0.90651 0.95178 0.83249 0.93959 0.89695 0.77489 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.99 37.16 0.30 -0.73 16 2 C -0.10 -0.69 3.60 -88.74 -0.32 -1.01 16 3 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 4 C 0.10 0.67 6.40 -2.12 -0.01 0.66 16 5 N -0.62 -6.43 3.19 -169.76 -0.54 -6.98 16 6 C 0.53 6.22 7.45 -10.98 -0.08 6.14 16 7 O -0.51 -8.46 13.30 -12.70 -0.17 -8.63 16 8 C -0.16 -1.23 3.88 -27.88 -0.11 -1.33 16 9 C 0.14 1.25 0.98 -90.62 -0.09 1.16 16 10 C -0.15 -1.61 8.52 37.16 0.32 -1.29 16 11 C -0.18 -1.03 8.81 37.16 0.33 -0.71 16 12 O -0.54 -5.86 11.88 -53.48 -0.64 -6.50 16 13 C 0.12 1.43 6.45 -2.98 -0.02 1.41 16 14 C -0.09 -0.91 3.12 -89.25 -0.28 -1.18 16 15 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 16 C 0.07 0.78 3.60 -3.83 -0.01 0.77 16 17 N -0.67 -10.69 5.82 -115.06 -0.67 -11.36 16 18 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 19 C 0.44 10.62 7.82 -10.99 -0.09 10.54 16 20 O -0.58 -16.12 15.78 5.55 0.09 -16.03 16 21 N -0.56 -14.60 5.29 -10.97 -0.06 -14.66 16 22 C -0.30 -8.48 9.68 -14.94 -0.14 -8.62 16 23 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 26 Si 0.93 21.45 29.55 -169.99 -5.02 16.43 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 30 H 0.06 0.47 6.67 -51.93 -0.35 0.13 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.52 7.61 -51.93 -0.40 0.12 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.36 7.15 -51.93 -0.37 -0.01 16 35 H 0.10 0.55 7.91 -51.93 -0.41 0.14 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.30 5.51 -51.93 -0.29 1.02 16 40 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.37 2.47 9.04 45.56 0.41 2.88 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.09 1.47 7.48 -51.93 -0.39 1.08 16 46 H 0.08 0.92 6.85 -51.93 -0.36 0.57 16 47 H 0.03 0.32 7.55 -51.93 -0.39 -0.07 16 48 H 0.35 5.66 8.43 -39.29 -0.33 5.33 16 49 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 51 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 52 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 412.54 15.07 6.22 6.22 Total: -1.00 -35.73 412.54 -8.60 -44.33 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -8.19 Total: 14.20 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -0.34 Total: 7.17 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.54 Total: -57.19 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.72 Total: -31.16 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.73 -8.60 -44.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501111891.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.627 kcal (2) G-P(sol) polarization free energy of solvation -35.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds