Wall clock time and date at job start Wed Apr 1 2020 01:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.80704 * 2 1 4 4 C 1.54949 * 110.74031 * 236.71398 * 2 1 3 5 5 N 1.48118 * 103.25218 * 279.04143 * 4 2 1 6 6 C 1.34776 * 127.03368 * 140.74127 * 5 4 2 7 7 O 1.21285 * 120.00331 * 179.97438 * 6 5 4 8 8 C 1.50704 * 119.99994 * 359.95737 * 6 5 4 9 9 C 1.52997 * 109.47209 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47051 * 60.00257 * 9 8 6 11 11 C 1.52998 * 109.47270 * 180.02562 * 9 8 6 12 12 O 1.42899 * 109.47237 * 300.00115 * 9 8 6 13 13 C 1.47485 * 105.93588 * 320.70449 * 5 4 2 14 14 C 1.54010 * 107.07903 * 25.45059 * 13 5 4 15 15 H 1.09006 * 110.32039 * 239.69709 * 14 13 5 16 16 C 1.52997 * 110.32666 * 117.58800 * 14 13 5 17 17 N 1.46899 * 109.47254 * 66.44951 * 16 14 13 18 18 C 1.46904 * 111.00029 * 179.97438 * 17 16 14 19 19 C 1.50696 * 109.46800 * 180.02562 * 18 17 16 20 20 O 1.21289 * 120.00338 * 0.02562 * 19 18 17 21 21 N 1.34782 * 119.99855 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00193 * 180.02562 * 21 19 18 23 23 H 1.08002 * 120.00238 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00205 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99909 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00181 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47138 * 89.99534 * 26 24 22 28 28 H 1.48502 * 109.46886 * 209.99398 * 26 24 22 29 29 H 1.48495 * 109.47039 * 329.99454 * 26 24 22 30 30 H 1.08994 * 109.47027 * 296.70869 * 1 2 3 31 31 H 1.09001 * 109.46918 * 56.70421 * 1 2 3 32 32 H 1.08996 * 109.47100 * 176.70267 * 1 2 3 33 33 H 1.08994 * 110.66427 * 160.59610 * 4 2 1 34 34 H 1.09002 * 110.80464 * 37.54767 * 4 2 1 35 35 H 1.08998 * 109.47176 * 299.99960 * 8 6 5 36 36 H 1.08997 * 109.46993 * 59.99952 * 8 6 5 37 37 H 1.08997 * 109.47545 * 59.99545 * 10 9 8 38 38 H 1.09001 * 109.47326 * 180.02562 * 10 9 8 39 39 H 1.09003 * 109.47029 * 299.99649 * 10 9 8 40 40 H 1.08997 * 109.47061 * 60.00191 * 11 9 8 41 41 H 1.09008 * 109.47059 * 180.02562 * 11 9 8 42 42 H 1.09001 * 109.47244 * 299.99756 * 11 9 8 43 43 H 0.96696 * 114.00048 * 299.99944 * 12 9 8 44 44 H 1.08997 * 109.91370 * 266.08928 * 13 5 4 45 45 H 1.08998 * 109.91121 * 144.80747 * 13 5 4 46 46 H 1.09002 * 109.47153 * 306.44947 * 16 14 13 47 47 H 1.09001 * 109.46832 * 186.45138 * 16 14 13 48 48 H 1.00908 * 110.99847 * 56.04959 * 17 16 14 49 49 H 1.08995 * 109.47167 * 300.00240 * 18 17 16 50 50 H 1.09003 * 109.46442 * 60.00214 * 18 17 16 51 51 H 0.97000 * 119.99567 * 0.02562 * 21 19 18 52 52 H 0.96998 * 120.00315 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0787 -0.7953 -1.2113 5 7 1.9871 -2.2038 -0.7624 6 6 1.6233 -3.2697 -1.5027 7 8 1.5925 -4.3739 -1.0019 8 6 1.2543 -3.0894 -2.9527 9 6 0.8843 -4.4454 -3.5572 10 6 -0.3059 -5.0347 -2.7976 11 6 0.5103 -4.2625 -5.0295 12 8 2.0002 -5.3323 -3.4564 13 6 2.3762 -2.2016 0.6601 14 6 2.0775 -0.7938 1.2086 15 1 2.9907 -0.3323 1.5844 16 6 1.0253 -0.8674 2.3168 17 7 1.5817 -1.5816 3.4737 18 6 0.5972 -1.6713 4.5603 19 6 1.2027 -2.4080 5.7271 20 8 2.3424 -2.8176 5.6603 21 7 0.4778 -2.6118 6.8450 22 6 1.0288 -3.2815 7.9067 23 1 2.0437 -3.6463 7.8473 24 6 0.2814 -3.4920 9.0590 25 7 -0.9536 -3.0487 9.1312 26 14 1.0319 -4.4053 10.5054 27 1 1.6967 -3.4352 11.4122 28 1 -0.0366 -5.1230 11.2459 29 1 2.0323 -5.3835 10.0079 30 1 -0.3633 0.4619 0.9180 31 1 -0.3633 0.5642 -0.8590 32 1 -0.3633 -1.0259 -0.0591 33 1 3.1145 -0.5225 -1.4132 34 1 1.4603 -0.6319 -2.0940 35 1 0.4034 -2.4126 -3.0297 36 1 2.1023 -2.6700 -3.4940 37 1 -1.1571 -4.3582 -2.8744 38 1 -0.5692 -6.0009 -3.2279 39 1 -0.0390 -5.1651 -1.7488 40 1 1.3585 -3.8429 -5.5703 41 1 0.2463 -5.2285 -5.4600 42 1 -0.3408 -3.5859 -5.1068 43 1 2.7923 -5.0217 -3.9158 44 1 3.4402 -2.4186 0.7543 45 1 1.7935 -2.9439 1.2056 46 1 0.1473 -1.3989 1.9496 47 1 0.7407 0.1416 2.6152 48 1 2.4333 -1.1447 3.7930 49 1 0.3100 -0.6678 4.8742 50 1 -0.2839 -2.2082 4.2088 51 1 -0.4337 -2.2845 6.8983 52 1 -1.4756 -3.1959 9.9354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501111891.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:13 Heat of formation + Delta-G solvation = -151.613053 kcal Electronic energy + Delta-G solvation = -30457.779637 eV Core-core repulsion = 26262.817032 eV Total energy + Delta-G solvation = -4194.962605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.41274 -40.23373 -39.71360 -38.11985 -36.61366 -35.82641 -33.82633 -33.53379 -33.26545 -31.38028 -29.75544 -28.18732 -28.16794 -27.51431 -26.37989 -24.81454 -23.24136 -21.54973 -21.19797 -20.30357 -20.18303 -19.85613 -18.19136 -17.79828 -17.55593 -17.45481 -16.90405 -16.48931 -16.13555 -16.07385 -15.82916 -15.59822 -15.37337 -15.23095 -15.14077 -14.60944 -14.19989 -14.15594 -13.93189 -13.56737 -13.53797 -13.27577 -13.19281 -13.10899 -13.00619 -12.89381 -12.82650 -12.74592 -12.71875 -12.64731 -12.44420 -12.37948 -12.14419 -11.71249 -11.62989 -11.59741 -11.52929 -11.37760 -11.03179 -10.50579 -10.37314 -10.04032 -9.59303 -9.29817 -8.48935 -5.97850 1.36060 1.39671 1.52929 1.74235 2.02406 2.04866 2.27435 2.89479 3.17975 3.34978 3.44887 3.56065 3.64620 3.71766 3.83884 3.90853 4.05482 4.22718 4.25633 4.30550 4.34011 4.44129 4.51557 4.53813 4.55314 4.59144 4.65830 4.69388 4.72456 4.75921 4.76989 4.90536 4.94288 4.99418 5.04275 5.07548 5.12240 5.19096 5.25169 5.30381 5.36754 5.38687 5.46725 5.57302 5.87298 6.09112 6.42975 6.57670 6.67915 6.98009 7.10115 7.32075 7.53344 8.08941 8.68519 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.002052 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.313543 B =13645.125973 C =14632.799543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.118 0.882 4 C 0.101 3.899 5 N -0.624 5.624 6 C 0.516 3.484 7 O -0.573 6.573 8 C -0.152 4.152 9 C 0.138 3.862 10 C -0.156 4.156 11 C -0.168 4.168 12 O -0.574 6.574 13 C 0.118 3.882 14 C -0.087 4.087 15 H 0.094 0.906 16 C 0.072 3.928 17 N -0.689 5.689 18 C 0.068 3.932 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.077 0.923 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.994 3.006 27 H -0.268 1.268 28 H -0.270 1.270 29 H -0.275 1.275 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.382 0.618 44 H 0.050 0.950 45 H 0.045 0.955 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.345 0.655 49 H 0.071 0.929 50 H 0.095 0.905 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.175 12.438 -31.010 33.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.137 0.863 4 C -0.021 4.021 5 N -0.358 5.358 6 C 0.307 3.693 7 O -0.453 6.453 8 C -0.192 4.192 9 C 0.097 3.903 10 C -0.213 4.213 11 C -0.225 4.225 12 O -0.382 6.382 13 C -0.006 4.006 14 C -0.107 4.107 15 H 0.112 0.888 16 C -0.057 4.057 17 N -0.321 5.321 18 C -0.065 4.065 19 C 0.224 3.776 20 O -0.510 6.510 21 N -0.211 5.211 22 C -0.465 4.465 23 H 0.095 0.905 24 C -0.214 4.214 25 N -0.561 5.561 26 Si 0.818 3.182 27 H -0.193 1.193 28 H -0.194 1.194 29 H -0.200 1.200 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.230 0.770 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.085 0.915 47 H 0.071 0.929 48 H 0.164 0.836 49 H 0.089 0.911 50 H 0.113 0.887 51 H 0.230 0.770 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.149 10.512 -30.603 32.358 hybrid contribution 0.259 0.365 1.443 1.511 sum 0.408 10.877 -29.160 31.125 Atomic orbital electron populations 1.21834 0.94239 1.01135 1.03019 1.22326 0.96512 0.99927 0.92249 0.86349 1.22909 1.02717 0.78198 0.98266 1.49034 1.66798 1.08868 1.11115 1.20995 0.76227 0.82548 0.89528 1.90727 1.54033 1.26186 1.74308 1.22470 1.05789 1.00477 0.90414 1.21055 0.86798 0.87344 0.95119 1.22005 0.96641 1.01290 1.01408 1.22418 1.03611 1.03027 0.93490 1.86710 1.23587 1.49204 1.78651 1.21828 0.98814 0.98290 0.81656 1.22096 0.99266 0.94083 0.95229 0.88767 1.22168 0.97361 0.96471 0.89660 1.60051 1.06784 1.58274 1.07030 1.21480 0.95755 0.99464 0.89758 1.20923 0.86936 0.84823 0.84960 1.90489 1.20798 1.56630 1.83093 1.41934 1.15342 1.50718 1.13056 1.19663 0.99598 1.33535 0.93657 0.90450 1.26067 0.95888 0.98292 1.01124 1.69671 1.09250 1.46678 1.30462 0.84913 0.77853 0.78194 0.77280 1.19318 1.19443 1.20027 0.92055 0.90304 0.94578 0.89212 0.87263 0.85601 0.85807 0.89935 0.93023 0.92987 0.90252 0.92375 0.89805 0.77010 0.93211 0.93675 0.91496 0.92884 0.83575 0.91144 0.88688 0.76964 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 7.99 71.98 0.57 -1.00 16 2 C -0.09 -0.92 3.60 -9.58 -0.03 -0.95 16 3 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 4 C 0.10 0.93 6.40 86.73 0.55 1.49 16 5 N -0.62 -12.38 3.19 -809.37 -2.58 -14.96 16 6 C 0.52 12.18 7.45 87.66 0.65 12.83 16 7 O -0.57 -20.53 13.30 14.40 0.19 -20.34 16 8 C -0.15 -1.87 3.88 29.85 0.12 -1.76 16 9 C 0.14 2.24 0.98 -10.79 -0.01 2.23 16 10 C -0.16 -3.38 8.52 71.98 0.61 -2.76 16 11 C -0.17 -1.48 8.81 71.98 0.63 -0.84 16 12 O -0.57 -12.59 11.88 -131.53 -1.56 -14.15 16 13 C 0.12 2.99 6.45 86.53 0.56 3.55 16 14 C -0.09 -1.58 3.12 -9.90 -0.03 -1.61 16 15 H 0.09 1.56 8.14 -2.38 -0.02 1.55 16 16 C 0.07 1.61 3.60 86.30 0.31 1.92 16 17 N -0.69 -22.29 5.82 -517.93 -3.01 -25.31 16 18 C 0.07 2.43 6.17 85.55 0.53 2.95 16 19 C 0.44 21.67 7.82 87.65 0.69 22.35 16 20 O -0.62 -36.08 15.78 -3.06 -0.05 -36.13 16 21 N -0.57 -30.53 5.29 -306.99 -1.62 -32.15 16 22 C -0.33 -19.67 9.68 84.04 0.81 -18.86 16 23 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 25 N -0.92 -50.72 13.05 21.66 0.28 -50.44 16 26 Si 0.99 44.17 29.55 68.60 2.03 46.20 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 30 H 0.06 0.72 6.67 -2.39 -0.02 0.70 16 31 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.04 0.57 7.61 -2.39 -0.02 0.55 16 33 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.11 0.40 7.15 -2.39 -0.02 0.38 16 35 H 0.13 0.87 7.91 -2.39 -0.02 0.85 16 36 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.05 1.59 5.51 -2.39 -0.01 1.58 16 40 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.38 4.94 9.04 -74.06 -0.67 4.27 16 44 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.04 1.57 7.48 -2.39 -0.02 1.55 16 46 H 0.07 1.63 6.85 -2.39 -0.02 1.61 16 47 H 0.05 0.98 7.55 -2.39 -0.02 0.97 16 48 H 0.35 11.40 8.43 -89.69 -0.76 10.65 16 49 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 51 H 0.40 19.97 7.90 -92.71 -0.73 19.23 16 52 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -84.81 412.54 -1.11 -85.91 By element: Atomic # 1 Polarization: 43.34 SS G_CDS: -1.22 Total: 42.13 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 6.43 Total: 19.24 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -6.93 Total: -122.85 kcal Atomic # 8 Polarization: -69.20 SS G_CDS: -1.42 Total: -70.62 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -84.81 -1.11 -85.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501111891.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.700 kcal (2) G-P(sol) polarization free energy of solvation -84.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds