Wall clock time and date at job start Wed Apr 1 2020 01:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.38671 * 2 1 4 4 C 1.54393 * 110.34205 * 122.22021 * 2 1 3 5 5 N 1.48142 * 104.61390 * 142.73994 * 4 2 1 6 6 C 1.34781 * 127.83622 * 140.39495 * 5 4 2 7 7 O 1.21283 * 119.99777 * 179.97438 * 6 5 4 8 8 C 1.50700 * 119.99935 * 359.97369 * 6 5 4 9 9 C 1.52999 * 109.47052 * 186.16173 * 8 6 5 10 10 C 1.53004 * 109.47097 * 62.77346 * 9 8 6 11 11 C 1.52998 * 109.47101 * 182.77394 * 9 8 6 12 12 O 1.42903 * 109.47290 * 302.77472 * 9 8 6 13 13 C 1.48417 * 104.34254 * 320.39173 * 5 4 2 14 14 C 1.54279 * 110.34594 * 237.76354 * 2 1 3 15 15 H 1.08996 * 110.34393 * 0.10324 * 14 2 1 16 16 C 1.53004 * 110.34314 * 122.25944 * 14 2 1 17 17 N 1.46903 * 109.46938 * 183.52661 * 16 14 2 18 18 C 1.46901 * 110.99385 * 180.02562 * 17 16 14 19 19 C 1.50707 * 109.46470 * 179.97438 * 18 17 16 20 20 O 1.21291 * 119.99974 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99821 * 179.72115 * 19 18 17 22 22 C 1.37092 * 120.00287 * 180.27488 * 21 19 18 23 23 H 1.07999 * 119.99828 * 0.02562 * 22 21 19 24 24 C 1.38946 * 120.00449 * 179.97438 * 22 21 19 25 25 N 1.31418 * 120.00035 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00219 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47431 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47209 * 120.00288 * 26 24 22 29 29 H 1.48505 * 109.47254 * 239.99951 * 26 24 22 30 30 H 1.09004 * 109.47156 * 182.23531 * 1 2 3 31 31 H 1.08996 * 109.47998 * 302.23660 * 1 2 3 32 32 H 1.09001 * 109.47051 * 62.24006 * 1 2 3 33 33 H 1.08994 * 110.41280 * 261.52735 * 4 2 1 34 34 H 1.09001 * 110.40409 * 23.96132 * 4 2 1 35 35 H 1.08999 * 109.46732 * 306.15731 * 8 6 5 36 36 H 1.08998 * 109.47188 * 66.16307 * 8 6 5 37 37 H 1.09003 * 109.47015 * 60.00072 * 10 9 8 38 38 H 1.09006 * 109.47174 * 180.02562 * 10 9 8 39 39 H 1.08998 * 109.47037 * 299.99859 * 10 9 8 40 40 H 1.08997 * 109.47074 * 60.41589 * 11 9 8 41 41 H 1.08998 * 109.46830 * 180.41374 * 11 9 8 42 42 H 1.09005 * 109.46929 * 300.41204 * 11 9 8 43 43 H 0.96696 * 113.99946 * 180.02562 * 12 9 8 44 44 H 1.08997 * 110.45261 * 280.87230 * 13 5 4 45 45 H 1.09000 * 110.49478 * 158.35599 * 13 5 4 46 46 H 1.09001 * 109.46985 * 63.52179 * 16 14 2 47 47 H 1.08999 * 109.46587 * 303.52386 * 16 14 2 48 48 H 1.00899 * 110.99630 * 303.94861 * 17 16 14 49 49 H 1.08994 * 109.47768 * 60.00062 * 18 17 16 50 50 H 1.08999 * 109.47127 * 299.98848 * 18 17 16 51 51 H 0.97006 * 120.00117 * 0.27608 * 21 19 18 52 52 H 0.96998 * 119.99946 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7718 1.2247 5 7 3.2664 -1.4815 0.7229 6 6 4.4426 -1.6657 1.3548 7 8 5.3367 -2.2746 0.8063 8 6 4.6466 -1.1152 2.7427 9 6 6.1019 -1.3254 3.1658 10 6 7.0237 -0.5425 2.2286 11 6 6.2926 -0.8293 4.6005 12 8 6.4220 -2.7164 3.0963 13 6 2.8796 -1.9437 -0.6334 14 6 2.0664 -0.7716 -1.2236 15 1 1.2399 -1.1491 -1.8256 16 6 2.9693 0.1305 -2.0673 17 7 3.4008 -0.5953 -3.2694 18 6 4.2719 0.2418 -4.1052 19 6 4.6940 -0.5349 -5.3258 20 8 4.3068 -1.6735 -5.4840 21 7 5.4967 0.0377 -6.2447 22 6 5.8761 -0.6669 -7.3578 23 1 5.5314 -1.6806 -7.4987 24 6 6.7032 -0.0764 -8.3053 25 7 7.1223 1.1574 -8.1342 26 14 7.2207 -1.0366 -9.8217 27 1 6.6190 -2.3935 -9.7777 28 1 6.7533 -0.3277 -11.0400 29 1 8.7010 -1.1519 -9.8534 30 1 -0.3634 -1.0269 0.0401 31 1 -0.3635 0.5481 0.8692 32 1 -0.3633 0.4787 -0.9094 33 1 2.3399 -0.0792 2.0207 34 1 1.3234 -1.4859 1.5795 35 1 4.4170 -0.0497 2.7482 36 1 3.9873 -1.6327 3.4394 37 1 6.7795 0.5186 2.2817 38 1 8.0605 -0.6926 2.5298 39 1 6.8878 -0.8959 1.2066 40 1 5.6413 -1.3921 5.2691 41 1 7.3310 -0.9723 4.8993 42 1 6.0413 0.2300 4.6550 43 1 7.3312 -2.9239 3.3518 44 1 2.2626 -2.8399 -0.5687 45 1 3.7658 -2.1343 -1.2387 46 1 3.8434 0.4183 -1.4831 47 1 2.4180 1.0240 -2.3606 48 1 3.8581 -1.4607 -3.0245 49 1 5.1550 0.5299 -3.5351 50 1 3.7301 1.1362 -4.4128 51 1 5.8060 0.9484 -6.1183 52 1 7.7000 1.5695 -8.7955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501111893.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:21 Heat of formation + Delta-G solvation = -127.052062 kcal Electronic energy + Delta-G solvation = -30559.626363 eV Core-core repulsion = 26365.728802 eV Total energy + Delta-G solvation = -4193.897560 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.51056 -38.99822 -38.15572 -37.27613 -35.24821 -33.81130 -33.11405 -32.80479 -31.21463 -30.56806 -28.82084 -27.60185 -26.85003 -26.47081 -25.11681 -23.73875 -21.75173 -21.00597 -19.95815 -19.36574 -19.14216 -17.86729 -17.36644 -16.70887 -16.62151 -15.95001 -15.82370 -15.44532 -15.00097 -14.78251 -14.50919 -14.36293 -14.08264 -14.00934 -13.71008 -13.67032 -13.37081 -13.14169 -13.01217 -12.90307 -12.61805 -12.35506 -12.24043 -12.11870 -12.10683 -12.01513 -11.79125 -11.56451 -11.50761 -11.44278 -11.16088 -11.03362 -10.91213 -10.81128 -10.72565 -10.30891 -10.26305 -10.18281 -9.68149 -9.47939 -8.82248 -8.41378 -8.01843 -7.91500 -6.37840 -3.78328 2.59842 2.77558 3.19531 3.29694 3.37537 3.89602 3.95437 4.06175 4.19720 4.24828 4.35515 4.37334 4.56664 4.64917 4.66505 4.87543 4.98539 5.02793 5.06672 5.12956 5.17461 5.18087 5.20682 5.23563 5.29817 5.37722 5.43477 5.46830 5.53223 5.57798 5.65925 5.69498 5.70917 5.75811 5.80740 5.86440 5.88745 5.92645 5.98662 6.04677 6.16306 6.27232 6.33019 7.25096 7.42725 7.53482 7.59470 7.69226 8.10909 8.14792 8.65733 9.22213 9.58790 10.10440 10.80167 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.002359 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.941356 B =11868.735138 C =13548.785276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.082 0.918 4 C 0.104 3.896 5 N -0.630 5.630 6 C 0.533 3.467 7 O -0.512 6.512 8 C -0.123 4.123 9 C 0.142 3.858 10 C -0.187 4.187 11 C -0.179 4.179 12 O -0.544 6.544 13 C 0.108 3.892 14 C -0.096 4.096 15 H 0.099 0.901 16 C 0.069 3.931 17 N -0.669 5.669 18 C 0.051 3.949 19 C 0.442 3.558 20 O -0.582 6.582 21 N -0.565 5.565 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.373 0.627 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.025 0.975 47 H 0.073 0.927 48 H 0.348 0.652 49 H 0.042 0.958 50 H 0.086 0.914 51 H 0.392 0.608 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.653 2.615 27.657 29.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.101 0.899 4 C -0.019 4.019 5 N -0.366 5.366 6 C 0.321 3.679 7 O -0.387 6.387 8 C -0.163 4.163 9 C 0.101 3.899 10 C -0.244 4.244 11 C -0.236 4.236 12 O -0.349 6.349 13 C -0.015 4.015 14 C -0.116 4.116 15 H 0.118 0.882 16 C -0.061 4.061 17 N -0.302 5.302 18 C -0.082 4.082 19 C 0.227 3.773 20 O -0.466 6.466 21 N -0.202 5.202 22 C -0.426 4.426 23 H 0.121 0.879 24 C -0.181 4.181 25 N -0.545 5.545 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.220 0.780 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.044 0.956 47 H 0.091 0.909 48 H 0.169 0.831 49 H 0.060 0.940 50 H 0.104 0.896 51 H 0.225 0.775 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.354 1.707 26.628 28.275 hybrid contribution 1.838 0.451 0.049 1.893 sum -7.516 2.158 26.678 27.800 Atomic orbital electron populations 1.21819 0.93692 1.02232 1.02220 1.22131 0.96336 0.99741 0.93924 0.89924 1.22500 0.87179 0.95456 0.96779 1.49146 1.13056 1.56512 1.17851 1.20093 0.80420 0.80057 0.87306 1.90749 1.40672 1.40226 1.67006 1.21713 0.97283 1.02572 0.94760 1.20815 0.93037 0.82656 0.93418 1.22633 0.99268 0.99944 1.02555 1.22519 1.02592 1.01952 0.96549 1.86662 1.34266 1.22842 1.91173 1.22452 0.99578 0.96551 0.82877 1.22243 0.98737 0.95292 0.95302 0.88243 1.21985 0.97249 0.96578 0.90288 1.60164 1.45116 1.07128 1.17800 1.21660 0.95317 0.96742 0.94463 1.19814 0.83669 0.88216 0.85562 1.90522 1.58687 1.18960 1.78425 1.41867 1.43158 1.15759 1.19398 1.19758 1.26707 0.99208 0.96975 0.87869 1.25263 0.97097 0.96079 0.99617 1.69626 1.35357 1.12768 1.36715 0.85800 0.78194 0.79672 0.80679 1.19203 1.20767 1.20782 0.92252 0.92506 0.91811 0.90559 0.90896 0.88172 0.88449 0.92287 0.92391 0.89786 0.91787 0.91916 0.91549 0.78016 0.90965 0.89752 0.95644 0.90864 0.83118 0.94021 0.89620 0.77490 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.92 37.16 0.33 -0.50 16 2 C -0.10 -0.74 3.31 -89.22 -0.30 -1.03 16 3 H 0.08 0.59 7.71 -51.93 -0.40 0.19 16 4 C 0.10 0.73 6.46 -2.41 -0.02 0.71 16 5 N -0.63 -6.73 3.32 -169.08 -0.56 -7.29 16 6 C 0.53 6.64 7.40 -10.98 -0.08 6.56 16 7 O -0.51 -8.64 13.47 -15.11 -0.20 -8.84 16 8 C -0.12 -1.05 4.07 -27.88 -0.11 -1.17 16 9 C 0.14 1.26 0.98 -90.62 -0.09 1.17 16 10 C -0.19 -1.80 8.53 37.16 0.32 -1.49 16 11 C -0.18 -1.06 8.81 37.16 0.33 -0.74 16 12 O -0.54 -5.98 11.54 -55.90 -0.64 -6.62 16 13 C 0.11 1.27 6.47 -2.26 -0.01 1.25 16 14 C -0.10 -0.98 2.95 -89.22 -0.26 -1.25 16 15 H 0.10 1.05 7.71 -51.93 -0.40 0.65 16 16 C 0.07 0.86 4.90 -3.82 -0.02 0.84 16 17 N -0.67 -11.31 6.13 -115.05 -0.70 -12.01 16 18 C 0.05 0.95 6.17 -4.97 -0.03 0.92 16 19 C 0.44 10.89 7.82 -10.98 -0.09 10.81 16 20 O -0.58 -16.41 15.78 5.55 0.09 -16.33 16 21 N -0.57 -14.83 5.29 -10.96 -0.06 -14.89 16 22 C -0.30 -8.53 9.68 -14.94 -0.14 -8.67 16 23 H 0.10 3.11 7.16 -52.49 -0.38 2.74 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -25.14 13.05 55.50 0.72 -24.41 16 26 Si 0.93 21.58 29.55 -169.99 -5.02 16.55 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 30 H 0.06 0.34 8.10 -51.93 -0.42 -0.08 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.38 7.12 -51.93 -0.37 0.01 16 34 H 0.07 0.44 7.83 -51.93 -0.41 0.04 16 35 H 0.10 0.61 7.67 -51.93 -0.40 0.21 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 1.11 5.98 -51.93 -0.31 0.80 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.37 2.75 9.04 45.56 0.41 3.17 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.08 1.24 6.17 -51.93 -0.32 0.92 16 46 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.35 6.33 6.79 -39.29 -0.27 6.07 16 49 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 51 H 0.39 9.82 7.90 -40.82 -0.32 9.50 16 52 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 414.77 15.07 6.25 6.25 Total: -1.00 -35.93 414.77 -8.62 -44.55 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -8.21 Total: 15.15 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -0.27 Total: 7.90 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.60 Total: -58.61 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.76 Total: -31.79 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.93 -8.62 -44.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501111893.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.504 kcal (2) G-P(sol) polarization free energy of solvation -35.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds