Wall clock time and date at job start Wed Apr 1 2020 01:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.38671 * 2 1 4 4 C 1.54393 * 110.34205 * 122.22021 * 2 1 3 5 5 N 1.48142 * 104.61390 * 142.73994 * 4 2 1 6 6 C 1.34781 * 127.83622 * 140.39495 * 5 4 2 7 7 O 1.21283 * 119.99777 * 179.97438 * 6 5 4 8 8 C 1.50700 * 119.99935 * 359.97369 * 6 5 4 9 9 C 1.52999 * 109.47052 * 186.16173 * 8 6 5 10 10 C 1.53004 * 109.47097 * 62.77346 * 9 8 6 11 11 C 1.52998 * 109.47101 * 182.77394 * 9 8 6 12 12 O 1.42903 * 109.47290 * 302.77472 * 9 8 6 13 13 C 1.48417 * 104.34254 * 320.39173 * 5 4 2 14 14 C 1.54279 * 110.34594 * 237.76354 * 2 1 3 15 15 H 1.08996 * 110.34393 * 0.10324 * 14 2 1 16 16 C 1.53004 * 110.34314 * 122.25944 * 14 2 1 17 17 N 1.46903 * 109.46938 * 183.52661 * 16 14 2 18 18 C 1.46901 * 110.99385 * 180.02562 * 17 16 14 19 19 C 1.50707 * 109.46470 * 179.97438 * 18 17 16 20 20 O 1.21291 * 119.99974 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99821 * 179.72115 * 19 18 17 22 22 C 1.37092 * 120.00287 * 180.27488 * 21 19 18 23 23 H 1.07999 * 119.99828 * 0.02562 * 22 21 19 24 24 C 1.38946 * 120.00449 * 179.97438 * 22 21 19 25 25 N 1.31418 * 120.00035 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00219 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47431 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47209 * 120.00288 * 26 24 22 29 29 H 1.48505 * 109.47254 * 239.99951 * 26 24 22 30 30 H 1.09004 * 109.47156 * 182.23531 * 1 2 3 31 31 H 1.08996 * 109.47998 * 302.23660 * 1 2 3 32 32 H 1.09001 * 109.47051 * 62.24006 * 1 2 3 33 33 H 1.08994 * 110.41280 * 261.52735 * 4 2 1 34 34 H 1.09001 * 110.40409 * 23.96132 * 4 2 1 35 35 H 1.08999 * 109.46732 * 306.15731 * 8 6 5 36 36 H 1.08998 * 109.47188 * 66.16307 * 8 6 5 37 37 H 1.09003 * 109.47015 * 60.00072 * 10 9 8 38 38 H 1.09006 * 109.47174 * 180.02562 * 10 9 8 39 39 H 1.08998 * 109.47037 * 299.99859 * 10 9 8 40 40 H 1.08997 * 109.47074 * 60.41589 * 11 9 8 41 41 H 1.08998 * 109.46830 * 180.41374 * 11 9 8 42 42 H 1.09005 * 109.46929 * 300.41204 * 11 9 8 43 43 H 0.96696 * 113.99946 * 180.02562 * 12 9 8 44 44 H 1.08997 * 110.45261 * 280.87230 * 13 5 4 45 45 H 1.09000 * 110.49478 * 158.35599 * 13 5 4 46 46 H 1.09001 * 109.46985 * 63.52179 * 16 14 2 47 47 H 1.08999 * 109.46587 * 303.52386 * 16 14 2 48 48 H 1.00899 * 110.99630 * 303.94861 * 17 16 14 49 49 H 1.08994 * 109.47768 * 60.00062 * 18 17 16 50 50 H 1.08999 * 109.47127 * 299.98848 * 18 17 16 51 51 H 0.97006 * 120.00117 * 0.27608 * 21 19 18 52 52 H 0.96998 * 119.99946 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7718 1.2247 5 7 3.2664 -1.4815 0.7229 6 6 4.4426 -1.6657 1.3548 7 8 5.3367 -2.2746 0.8063 8 6 4.6466 -1.1152 2.7427 9 6 6.1019 -1.3254 3.1658 10 6 7.0237 -0.5425 2.2286 11 6 6.2926 -0.8293 4.6005 12 8 6.4220 -2.7164 3.0963 13 6 2.8796 -1.9437 -0.6334 14 6 2.0664 -0.7716 -1.2236 15 1 1.2399 -1.1491 -1.8256 16 6 2.9693 0.1305 -2.0673 17 7 3.4008 -0.5953 -3.2694 18 6 4.2719 0.2418 -4.1052 19 6 4.6940 -0.5349 -5.3258 20 8 4.3068 -1.6735 -5.4840 21 7 5.4967 0.0377 -6.2447 22 6 5.8761 -0.6669 -7.3578 23 1 5.5314 -1.6806 -7.4987 24 6 6.7032 -0.0764 -8.3053 25 7 7.1223 1.1574 -8.1342 26 14 7.2207 -1.0366 -9.8217 27 1 6.6190 -2.3935 -9.7777 28 1 6.7533 -0.3277 -11.0400 29 1 8.7010 -1.1519 -9.8534 30 1 -0.3634 -1.0269 0.0401 31 1 -0.3635 0.5481 0.8692 32 1 -0.3633 0.4787 -0.9094 33 1 2.3399 -0.0792 2.0207 34 1 1.3234 -1.4859 1.5795 35 1 4.4170 -0.0497 2.7482 36 1 3.9873 -1.6327 3.4394 37 1 6.7795 0.5186 2.2817 38 1 8.0605 -0.6926 2.5298 39 1 6.8878 -0.8959 1.2066 40 1 5.6413 -1.3921 5.2691 41 1 7.3310 -0.9723 4.8993 42 1 6.0413 0.2300 4.6550 43 1 7.3312 -2.9239 3.3518 44 1 2.2626 -2.8399 -0.5687 45 1 3.7658 -2.1343 -1.2387 46 1 3.8434 0.4183 -1.4831 47 1 2.4180 1.0240 -2.3606 48 1 3.8581 -1.4607 -3.0245 49 1 5.1550 0.5299 -3.5351 50 1 3.7301 1.1362 -4.4128 51 1 5.8060 0.9484 -6.1183 52 1 7.7000 1.5695 -8.7955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501111893.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:20 Heat of formation + Delta-G solvation = -155.228302 kcal Electronic energy + Delta-G solvation = -30560.848176 eV Core-core repulsion = 26365.728802 eV Total energy + Delta-G solvation = -4195.119374 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.35007 -40.23832 -39.64607 -38.15024 -36.61902 -35.83048 -33.94598 -33.52348 -33.30338 -31.54506 -29.68950 -28.20506 -28.17992 -27.15127 -26.54608 -25.24765 -22.65503 -21.69758 -21.21583 -20.63072 -20.14427 -19.92819 -18.25467 -17.93101 -17.46186 -17.38678 -16.73353 -16.58726 -16.49404 -16.00302 -15.83611 -15.57383 -15.20753 -15.12798 -15.01898 -14.64215 -14.33098 -14.29464 -13.92718 -13.66770 -13.55309 -13.44493 -13.33759 -13.22045 -12.95823 -12.92121 -12.84198 -12.68385 -12.65889 -12.53263 -12.44361 -12.32789 -12.13722 -11.84494 -11.64555 -11.56597 -11.54883 -11.48310 -11.01345 -10.56992 -10.39692 -10.05450 -9.69110 -9.40788 -8.50047 -5.99137 1.34205 1.39290 1.54152 1.71315 1.98325 2.00044 2.26753 2.86133 3.16577 3.27236 3.43448 3.48306 3.65270 3.74535 3.83248 3.85323 4.04978 4.20304 4.21579 4.26114 4.34406 4.43667 4.44894 4.46027 4.50551 4.58231 4.60997 4.67312 4.71004 4.74865 4.80182 4.84760 4.88041 4.92324 4.94528 4.99920 5.13726 5.21403 5.23339 5.28255 5.37754 5.38566 5.41801 5.58213 5.84053 6.05532 6.27305 6.56037 6.62531 6.93206 7.08750 7.26609 7.51202 8.06725 8.67788 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.002359 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.941356 B =11868.735138 C =13548.785276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.092 0.908 4 C 0.102 3.898 5 N -0.630 5.630 6 C 0.521 3.479 7 O -0.570 6.570 8 C -0.119 4.119 9 C 0.135 3.865 10 C -0.184 4.184 11 C -0.169 4.169 12 O -0.572 6.572 13 C 0.104 3.896 14 C -0.089 4.089 15 H 0.097 0.903 16 C 0.072 3.928 17 N -0.680 5.680 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.623 6.623 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.995 3.005 27 H -0.274 1.274 28 H -0.267 1.267 29 H -0.270 1.270 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.383 0.617 44 H 0.075 0.925 45 H 0.045 0.955 46 H 0.021 0.979 47 H 0.090 0.910 48 H 0.337 0.663 49 H 0.056 0.944 50 H 0.110 0.890 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.859 4.645 29.729 31.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.110 0.890 4 C -0.020 4.020 5 N -0.364 5.364 6 C 0.311 3.689 7 O -0.449 6.449 8 C -0.158 4.158 9 C 0.095 3.905 10 C -0.241 4.241 11 C -0.226 4.226 12 O -0.380 6.380 13 C -0.019 4.019 14 C -0.108 4.108 15 H 0.115 0.885 16 C -0.056 4.056 17 N -0.313 5.313 18 C -0.067 4.067 19 C 0.224 3.776 20 O -0.510 6.510 21 N -0.209 5.209 22 C -0.464 4.464 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.818 3.182 27 H -0.199 1.199 28 H -0.193 1.193 29 H -0.195 1.195 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.150 0.850 36 H 0.133 0.867 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.231 0.769 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.040 0.960 47 H 0.108 0.892 48 H 0.156 0.844 49 H 0.074 0.926 50 H 0.128 0.872 51 H 0.230 0.770 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.594 3.799 28.734 30.859 hybrid contribution 2.200 -0.190 -0.595 2.287 sum -8.394 3.609 28.138 29.585 Atomic orbital electron populations 1.21793 0.92227 1.02575 1.02949 1.22112 0.97372 0.99582 0.92070 0.89018 1.22788 0.85828 0.96042 0.97299 1.49277 1.13797 1.56127 1.17237 1.20937 0.80011 0.79364 0.88581 1.90727 1.42662 1.42907 1.68601 1.21840 0.97545 1.04350 0.92087 1.21026 0.92962 0.81588 0.94965 1.22590 1.00210 1.00913 1.00404 1.22420 1.03191 1.02888 0.94102 1.86630 1.35305 1.24495 1.91540 1.22382 0.98203 0.97709 0.83654 1.22187 0.97757 0.94666 0.96220 0.88523 1.22095 0.97536 0.97167 0.88838 1.60227 1.44301 1.06990 1.19772 1.21533 0.96559 0.96513 0.92135 1.20870 0.82210 0.88034 0.86534 1.90487 1.59887 1.21038 1.79591 1.41931 1.43698 1.15878 1.19442 1.19705 1.28793 0.98913 0.99008 0.90446 1.26076 0.96261 0.97030 1.01950 1.69681 1.35168 1.13550 1.37709 0.84852 0.78173 0.77967 0.77216 1.19899 1.19252 1.19513 0.92268 0.90448 0.92302 0.87536 0.89422 0.85048 0.86681 0.90648 0.91762 0.93999 0.91248 0.91390 0.89798 0.76865 0.90676 0.93626 0.96035 0.89190 0.84434 0.92621 0.87186 0.76952 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.92 71.98 0.64 -0.53 16 2 C -0.09 -1.07 3.31 -9.89 -0.03 -1.10 16 3 H 0.09 0.96 7.71 -2.39 -0.02 0.94 16 4 C 0.10 1.10 6.46 86.54 0.56 1.66 16 5 N -0.63 -13.00 3.32 -807.25 -2.68 -15.68 16 6 C 0.52 13.00 7.40 87.66 0.65 13.65 16 7 O -0.57 -20.53 13.47 16.72 0.23 -20.31 16 8 C -0.12 -1.78 4.07 29.85 0.12 -1.66 16 9 C 0.14 2.24 0.98 -10.79 -0.01 2.23 16 10 C -0.18 -3.52 8.53 71.98 0.61 -2.91 16 11 C -0.17 -1.55 8.81 71.98 0.63 -0.91 16 12 O -0.57 -12.77 11.54 -129.22 -1.49 -14.26 16 13 C 0.10 2.52 6.47 86.48 0.56 3.08 16 14 C -0.09 -1.74 2.95 -9.89 -0.03 -1.77 16 15 H 0.10 1.97 7.71 -2.39 -0.02 1.95 16 16 C 0.07 1.76 4.90 86.30 0.42 2.19 16 17 N -0.68 -23.43 6.13 -517.91 -3.17 -26.61 16 18 C 0.07 2.43 6.17 85.56 0.53 2.96 16 19 C 0.44 22.19 7.82 87.66 0.69 22.87 16 20 O -0.62 -36.80 15.78 -3.07 -0.05 -36.84 16 21 N -0.57 -30.93 5.29 -306.99 -1.62 -32.55 16 22 C -0.33 -19.83 9.68 84.04 0.81 -19.02 16 23 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 24 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 25 N -0.92 -51.01 13.05 21.66 0.28 -50.73 16 26 Si 0.99 44.33 29.55 68.60 2.03 46.36 16 27 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 28 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 29 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 30 H 0.06 0.52 8.10 -2.38 -0.02 0.50 16 31 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.11 0.56 7.12 -2.39 -0.02 0.54 16 34 H 0.09 0.75 7.83 -2.39 -0.02 0.73 16 35 H 0.13 1.09 7.67 -2.39 -0.02 1.08 16 36 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.04 1.18 5.98 -2.39 -0.01 1.16 16 40 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 43 H 0.38 5.91 9.04 -74.06 -0.67 5.24 16 44 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.05 1.47 6.17 -2.39 -0.01 1.45 16 46 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.34 13.00 6.79 -89.69 -0.61 12.39 16 49 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 51 H 0.40 20.26 7.90 -92.70 -0.73 19.53 16 52 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -82.69 414.77 -0.93 -83.62 By element: Atomic # 1 Polarization: 47.60 SS G_CDS: -1.07 Total: 46.52 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 6.62 Total: 20.47 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -7.19 Total: -125.57 kcal Atomic # 8 Polarization: -70.09 SS G_CDS: -1.31 Total: -71.41 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -82.69 -0.93 -83.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501111893.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.610 kcal (2) G-P(sol) polarization free energy of solvation -82.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds