Wall clock time and date at job start Wed Apr 1 2020 00:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47043 * 2 1 4 4 O 1.42902 * 109.47078 * 179.97438 * 3 2 1 5 5 C 1.42901 * 113.99723 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47078 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00086 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00132 * 180.02562 * 6 5 4 9 9 C 1.46931 * 120.63007 * 180.02562 * 8 6 5 10 10 C 1.53190 * 108.77468 * 233.62912 * 9 8 6 11 11 C 1.53042 * 109.31284 * 305.36751 * 10 9 8 12 12 C 1.52996 * 109.45958 * 301.35558 * 11 10 9 13 13 N 1.46904 * 109.45951 * 181.38715 * 11 10 9 14 14 C 1.46899 * 111.00029 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 11 16 16 O 1.21286 * 120.00016 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00108 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00333 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99712 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00268 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99720 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47371 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47443 * 120.00271 * 22 20 18 25 25 H 1.48504 * 109.46979 * 239.99980 * 22 20 18 26 26 C 1.53036 * 109.52913 * 61.37242 * 11 10 9 27 27 C 1.46922 * 120.63187 * 0.02562 * 8 6 5 28 28 H 1.09003 * 109.46968 * 299.99653 * 1 2 3 29 29 H 1.08997 * 109.47583 * 60.00046 * 1 2 3 30 30 H 1.09004 * 109.46687 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46968 * 240.00347 * 2 1 3 32 32 H 1.08997 * 109.47583 * 119.99954 * 2 1 3 33 33 H 1.09003 * 109.46955 * 60.00339 * 3 2 1 34 34 H 1.08997 * 109.46893 * 300.00377 * 3 2 1 35 35 H 1.09007 * 109.47035 * 60.00262 * 5 4 3 36 36 H 1.08994 * 109.47435 * 300.00288 * 5 4 3 37 37 H 1.09004 * 109.58740 * 113.84680 * 9 8 6 38 38 H 1.08992 * 109.70422 * 353.48901 * 9 8 6 39 39 H 1.09004 * 109.49944 * 185.41455 * 10 9 8 40 40 H 1.09005 * 109.52663 * 65.33023 * 10 9 8 41 41 H 1.09001 * 109.47165 * 300.02841 * 12 11 10 42 42 H 1.08995 * 109.47323 * 60.02794 * 12 11 10 43 43 H 1.09004 * 109.47010 * 180.02562 * 12 11 10 44 44 H 1.00902 * 111.00190 * 56.00997 * 13 11 10 45 45 H 1.09002 * 109.47043 * 299.99792 * 14 13 11 46 46 H 1.09001 * 109.47354 * 59.99854 * 14 13 11 47 47 H 0.97005 * 119.99463 * 359.97438 * 17 15 14 48 48 H 0.96996 * 119.99832 * 179.97438 * 21 20 18 49 49 H 1.09000 * 109.49835 * 58.58078 * 26 11 10 50 50 H 1.09002 * 109.49904 * 178.67607 * 26 11 10 51 51 H 1.08998 * 109.58884 * 246.15661 * 27 8 6 52 52 H 1.09003 * 109.58454 * 6.44451 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7481 0.0001 6 6 5.5524 2.6291 0.0001 7 8 6.0741 1.5342 0.0001 8 7 6.3163 3.7395 0.0002 9 6 7.7822 3.6396 -0.0003 10 6 8.3329 4.4639 1.1676 11 6 7.8004 5.8955 1.0723 12 6 8.2202 6.5074 -0.2656 13 7 8.3530 6.6975 2.1721 14 6 7.8631 8.0811 2.1125 15 6 8.4494 8.8712 3.2540 16 8 9.2011 8.3344 4.0401 17 7 8.1378 10.1741 3.4019 18 6 8.6716 10.8929 4.4400 19 1 9.3416 10.4152 5.1395 20 6 8.3507 12.2363 4.5922 21 7 7.5352 12.8175 3.7414 22 14 9.0787 13.2161 6.0063 23 1 9.9594 12.3366 6.8162 24 1 9.8716 14.3497 5.4667 25 1 7.9831 13.7407 6.8606 26 6 6.2732 5.8807 1.1694 27 6 5.6991 5.0728 0.0008 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.7281 3.2895 0.8897 36 1 3.7289 3.2885 -0.8903 37 1 8.1747 4.0293 -0.9396 38 1 8.0796 2.5975 0.1157 39 1 9.4220 4.4770 1.1221 40 1 8.0136 4.0190 2.1101 41 1 9.3080 6.5185 -0.3348 42 1 7.8104 5.9125 -1.0818 43 1 7.8414 7.5272 -0.3335 44 1 9.3616 6.6704 2.1680 45 1 8.1624 8.5321 1.1664 46 1 6.7758 8.0852 2.1890 47 1 7.5364 10.6032 2.7734 48 1 7.3109 13.7552 3.8478 49 1 5.9730 5.4221 2.1115 50 1 5.8959 6.9024 1.1251 51 1 5.9220 5.5790 -0.9384 52 1 4.6196 4.9756 0.1164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502770438.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:58 Heat of formation + Delta-G solvation = -117.813155 kcal Electronic energy + Delta-G solvation = -30075.814758 eV Core-core repulsion = 25882.317827 eV Total energy + Delta-G solvation = -4193.496931 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.76371 -39.14083 -38.17713 -37.66131 -35.36581 -34.08409 -33.92142 -32.08737 -31.27647 -31.04780 -28.92083 -27.65643 -26.78351 -25.94948 -24.48763 -23.95149 -22.87080 -21.96745 -20.29317 -19.23799 -18.35084 -17.90870 -17.72331 -16.91128 -16.76415 -16.41585 -15.85616 -15.60505 -15.33040 -14.87589 -14.86425 -14.67761 -14.52634 -14.22713 -13.98544 -13.94713 -13.55677 -13.46947 -13.14081 -12.60288 -12.56390 -12.44655 -12.38156 -12.33290 -12.12252 -12.02428 -11.83634 -11.57665 -11.39459 -11.32683 -11.28832 -11.25444 -11.07048 -10.80266 -10.42492 -10.35939 -10.23996 -10.08177 -9.90508 -9.53981 -8.90869 -8.47861 -8.06013 -7.97565 -6.44116 -3.84724 2.34263 2.41221 3.14652 3.25469 3.32785 3.42280 3.88584 4.02126 4.18912 4.25378 4.41608 4.52820 4.58361 4.66868 4.72880 4.79415 4.81315 4.89375 4.91062 5.02613 5.04090 5.06704 5.09413 5.14465 5.21324 5.24536 5.30214 5.37022 5.46140 5.52814 5.58159 5.62803 5.70506 5.71183 5.77663 5.79466 5.82055 5.97053 5.98789 6.08376 6.23808 6.24934 6.30487 6.68762 7.10236 7.22513 7.53435 7.63989 7.92747 8.04675 8.59207 9.16158 9.52273 10.03861 10.73697 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016799 B = 0.001854 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.411796 B =15096.024595 C =16129.380255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.365 6.365 5 C 0.045 3.955 6 C 0.517 3.483 7 O -0.522 6.522 8 N -0.609 5.609 9 C 0.115 3.885 10 C -0.120 4.120 11 C 0.115 3.885 12 C -0.190 4.190 13 N -0.657 5.657 14 C 0.046 3.954 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.126 4.126 27 C 0.105 3.895 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.351 0.649 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.079 0.921 50 H 0.081 0.919 51 H 0.076 0.924 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.709 -17.494 -13.708 25.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.284 6.284 5 C -0.034 4.034 6 C 0.304 3.696 7 O -0.397 6.397 8 N -0.345 5.345 9 C -0.007 4.007 10 C -0.159 4.159 11 C 0.023 3.977 12 C -0.249 4.249 13 N -0.289 5.289 14 C -0.086 4.086 15 C 0.226 3.774 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.164 4.164 27 C -0.018 4.018 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.171 0.829 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.097 0.903 50 H 0.100 0.900 51 H 0.094 0.906 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.347 -18.630 -12.704 25.243 hybrid contribution 0.231 1.790 -0.460 1.863 sum -11.116 -16.840 -13.164 24.092 Atomic orbital electron populations 1.21700 0.94612 1.02352 1.02047 1.21450 0.95641 0.95362 1.03671 1.22651 0.80385 0.98366 1.00339 1.88001 1.19648 1.25270 1.95436 1.22237 0.91769 0.86907 1.02529 1.20195 0.88632 0.84163 0.76574 1.90720 1.74439 1.26158 1.48391 1.48052 1.06954 1.05712 1.73744 1.21656 0.78423 1.02134 0.98528 1.21917 1.00815 0.94026 0.99131 1.20852 0.94386 0.93278 0.89177 1.22720 1.01889 1.01764 0.98525 1.60239 1.14668 1.10148 1.43831 1.21754 1.00748 0.88920 0.97173 1.19850 0.86303 0.82993 0.88278 1.90527 1.39864 1.69904 1.46392 1.41865 1.42908 1.08023 1.27325 1.19758 1.25596 0.91867 1.05618 0.87880 1.25254 0.96967 0.97025 0.98693 1.69615 1.35143 1.12897 1.36713 0.85806 0.78720 0.79307 0.80556 1.19217 1.20777 1.20752 1.22030 0.94876 1.00810 0.98680 1.21905 0.97669 0.82584 0.99660 0.92445 0.92518 0.91933 0.91010 0.90922 0.93028 0.93146 0.90079 0.90332 0.91158 0.88787 0.90460 0.90354 0.92344 0.91933 0.91850 0.82922 0.93554 0.89540 0.77530 0.91948 0.90275 0.90034 0.90623 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.36 16 2 C -0.12 -0.85 6.30 -26.73 -0.17 -1.01 16 3 C 0.06 0.44 5.94 37.16 0.22 0.66 16 4 O -0.37 -4.01 9.88 -55.14 -0.54 -4.55 16 5 C 0.05 0.40 4.76 36.00 0.17 0.57 16 6 C 0.52 6.06 7.77 -10.99 -0.09 5.97 16 7 O -0.52 -8.35 15.92 -14.36 -0.23 -8.58 16 8 N -0.61 -5.90 2.97 -172.75 -0.51 -6.42 16 9 C 0.11 1.13 5.96 -3.71 -0.02 1.10 16 10 C -0.12 -1.27 5.16 -26.61 -0.14 -1.40 16 11 C 0.11 1.26 0.71 -131.56 -0.09 1.17 16 12 C -0.19 -1.82 7.47 37.16 0.28 -1.54 16 13 N -0.66 -9.88 5.71 -101.17 -0.58 -10.46 16 14 C 0.05 0.77 5.38 -4.98 -0.03 0.74 16 15 C 0.44 10.12 7.82 -10.98 -0.09 10.04 16 16 O -0.58 -15.63 15.78 5.55 0.09 -15.55 16 17 N -0.56 -14.00 5.29 -10.97 -0.06 -14.06 16 18 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 22 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 C -0.13 -1.22 4.71 -26.59 -0.13 -1.35 16 27 C 0.11 0.78 5.88 -3.69 -0.02 0.76 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.56 7.69 -51.93 -0.40 0.16 16 36 H 0.08 0.48 7.94 -51.93 -0.41 0.07 16 37 H 0.07 0.60 6.69 -51.93 -0.35 0.25 16 38 H 0.09 1.05 7.01 -51.93 -0.36 0.68 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.51 4.98 -51.93 -0.26 0.25 16 43 H 0.06 0.63 6.40 -51.93 -0.33 0.30 16 44 H 0.35 5.58 8.42 -39.29 -0.33 5.25 16 45 H 0.05 0.69 6.30 -51.93 -0.33 0.36 16 46 H 0.09 1.30 6.27 -51.93 -0.33 0.98 16 47 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 48 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.08 0.77 6.33 -51.93 -0.33 0.45 16 51 H 0.08 0.48 6.69 -51.93 -0.35 0.14 16 52 H 0.08 0.45 5.93 -51.93 -0.31 0.14 16 LS Contribution 406.03 15.07 6.12 6.12 Total: -1.00 -34.33 406.03 -8.55 -42.88 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -8.57 Total: 10.80 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 0.03 Total: 7.42 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.42 Total: -54.38 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.69 Total: -28.67 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.33 -8.55 -42.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502770438.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.934 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds