Wall clock time and date at job start Wed Apr 1 2020 01:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00052 * 2 1 4 4 C 1.50701 * 109.47048 * 180.02562 * 3 2 1 5 5 O 1.21287 * 119.99871 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00144 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99932 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.46751 * 324.99400 * 7 6 4 9 9 C 1.50707 * 109.46759 * 204.99938 * 7 6 4 10 10 O 1.21279 * 120.00018 * 0.27385 * 9 7 6 11 11 N 1.34774 * 119.99565 * 179.97438 * 9 7 6 12 12 C 1.46509 * 119.99787 * 179.97438 * 11 9 7 13 13 H 1.08996 * 109.46818 * 325.00462 * 12 11 9 14 14 C 1.53002 * 109.46563 * 85.00592 * 12 11 9 15 15 C 1.52997 * 109.47051 * 205.00420 * 12 11 9 16 16 C 1.53948 * 113.73896 * 162.23524 * 15 12 11 17 17 N 1.47816 * 86.03289 * 222.08279 * 16 15 12 18 18 C 1.36939 * 134.45419 * 204.63986 * 17 16 15 19 19 H 1.07997 * 119.99861 * 182.60514 * 18 17 16 20 20 C 1.38808 * 120.00138 * 2.61062 * 18 17 16 21 21 N 1.31630 * 120.00022 * 353.35548 * 20 18 17 22 22 Si 1.86799 * 120.00415 * 173.35525 * 20 18 17 23 23 H 1.48498 * 109.47439 * 94.96754 * 22 20 18 24 24 H 1.48500 * 109.47390 * 214.97564 * 22 20 18 25 25 H 1.48506 * 109.46899 * 334.97359 * 22 20 18 26 26 C 1.47584 * 91.05303 * 24.54924 * 17 16 15 27 27 C 1.52992 * 109.47527 * 84.99781 * 7 6 4 28 28 C 1.52996 * 109.46991 * 300.00214 * 27 7 6 29 29 C 1.53004 * 109.46876 * 59.99902 * 27 7 6 30 30 H 1.09004 * 109.46876 * 299.99592 * 1 2 3 31 31 H 1.09004 * 109.47215 * 59.99555 * 1 2 3 32 32 H 1.09002 * 109.47238 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47069 * 60.00272 * 3 2 1 34 34 H 1.08996 * 109.47555 * 299.99920 * 3 2 1 35 35 H 0.97001 * 120.00041 * 0.02562 * 6 4 3 36 36 H 0.96997 * 120.00391 * 0.02562 * 11 9 7 37 37 H 1.09002 * 109.47238 * 304.48351 * 14 12 11 38 38 H 1.09004 * 109.47351 * 64.48983 * 14 12 11 39 39 H 1.09003 * 109.46916 * 184.49320 * 14 12 11 40 40 H 1.09003 * 112.94613 * 293.82341 * 15 12 11 41 41 H 1.08996 * 113.76848 * 336.34276 * 16 15 12 42 42 H 1.08992 * 113.77119 * 107.74574 * 16 15 12 43 43 H 0.96998 * 119.99805 * 180.02562 * 21 20 18 44 44 H 1.08994 * 113.76287 * 221.15157 * 26 17 16 45 45 H 1.08997 * 113.86833 * 89.76646 * 26 17 16 46 46 H 1.09000 * 109.47657 * 179.97438 * 27 7 6 47 47 H 1.09010 * 109.47000 * 179.97438 * 28 27 7 48 48 H 1.09001 * 109.47068 * 299.99193 * 28 27 7 49 49 H 1.08998 * 109.47794 * 59.99909 * 28 27 7 50 50 H 1.09001 * 109.47115 * 60.00021 * 29 27 7 51 51 H 1.09004 * 109.47259 * 179.97438 * 29 27 7 52 52 H 1.09000 * 109.47291 * 300.00097 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0341 0.0914 -0.0015 6 7 4.2765 2.2967 -0.0002 7 6 5.7370 2.1809 -0.0014 8 1 6.0331 1.3125 0.5872 9 6 6.3399 3.4244 0.5997 10 8 5.6203 4.3171 0.9951 11 7 7.6785 3.5419 0.7034 12 6 8.2647 4.7510 1.2873 13 1 7.6586 5.6156 1.0169 14 6 8.3060 4.6133 2.8105 15 6 9.6862 4.9376 0.7533 16 6 10.2372 6.3627 0.9424 17 7 10.7743 6.2264 -0.4280 18 6 11.8098 6.8029 -1.1139 19 1 11.9745 6.5545 -2.1520 20 6 12.6478 7.7064 -0.4751 21 7 12.3720 8.1090 0.7474 22 14 14.1671 8.3511 -1.3501 23 1 13.8504 9.6473 -2.0018 24 1 15.2605 8.5466 -0.3645 25 1 14.5982 7.3717 -2.3799 26 6 9.7484 5.2184 -0.7591 27 6 6.2345 2.0165 -1.4388 28 6 5.6223 0.7541 -2.0491 29 6 5.8188 3.2355 -2.2649 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8594 3.1724 0.0009 36 1 8.2539 2.8263 0.3908 37 1 7.3040 4.4009 3.1834 38 1 8.9757 3.7978 3.0836 39 1 8.6675 5.5431 3.2497 40 1 10.3701 4.1554 1.0829 41 1 9.4630 7.1240 1.0371 42 1 11.0060 6.4380 1.7113 43 1 12.9574 8.7406 1.1937 44 1 10.1278 4.3820 -1.3460 45 1 8.8297 5.6412 -1.1655 46 1 7.3211 1.9308 -1.4398 47 1 5.9764 0.6372 -3.0734 48 1 5.9185 -0.1143 -1.4606 49 1 4.5357 0.8401 -2.0483 50 1 6.2549 4.1348 -1.8301 51 1 6.1736 3.1186 -3.2889 52 1 4.7322 3.3216 -2.2640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506658900.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:46 Heat of formation + Delta-G solvation = -91.681799 kcal Electronic energy + Delta-G solvation = -31021.456522 eV Core-core repulsion = 26829.092732 eV Total energy + Delta-G solvation = -4192.363791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.83863 -40.62024 -39.64871 -38.47015 -36.99791 -36.23217 -34.30419 -34.01659 -31.96945 -30.23381 -29.33296 -28.20856 -27.97739 -26.64163 -26.30248 -25.62798 -23.10320 -22.29753 -21.59432 -20.94233 -20.47949 -18.98340 -18.74017 -18.06392 -17.54934 -17.32059 -17.11145 -16.82304 -16.74073 -16.17401 -15.85778 -15.72223 -15.61226 -15.18888 -14.89991 -14.78844 -14.66108 -14.21530 -14.02609 -13.97865 -13.40525 -13.27831 -13.22846 -13.21080 -13.05931 -12.98259 -12.82717 -12.67288 -12.36998 -12.35599 -12.34271 -12.07508 -11.99224 -11.78544 -11.78071 -11.56070 -11.22510 -10.88322 -10.83776 -10.80478 -10.74368 -10.14638 -10.02071 -8.91094 -7.90645 -5.22263 1.46126 1.47192 1.50307 1.54842 1.56683 1.66383 2.26779 2.48116 3.12910 3.31154 3.40037 3.48973 3.70592 3.77229 3.83975 3.94264 3.98562 4.17045 4.22766 4.27628 4.29455 4.46774 4.48159 4.52900 4.58827 4.60142 4.64261 4.79972 4.80338 4.84501 4.88742 4.89012 4.94954 4.97847 5.01037 5.09617 5.11808 5.26718 5.29264 5.32275 5.38795 5.44619 5.51131 5.56699 5.67924 5.95228 6.03561 6.47983 6.53107 6.93166 7.16704 7.19693 7.62230 8.57988 9.26885 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025733 B = 0.002125 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.821385 B =13171.607889 C =13756.344714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.043 3.957 4 C 0.515 3.485 5 O -0.553 6.553 6 N -0.701 5.701 7 C 0.140 3.860 8 H 0.114 0.886 9 C 0.519 3.481 10 O -0.569 6.569 11 N -0.702 5.702 12 C 0.165 3.835 13 H 0.066 0.934 14 C -0.153 4.153 15 C -0.109 4.109 16 C 0.170 3.830 17 N -0.644 5.644 18 C -0.234 4.234 19 H 0.083 0.917 20 C -0.068 4.068 21 N -0.953 5.953 22 Si 0.976 3.024 23 H -0.290 1.290 24 H -0.293 1.293 25 H -0.266 1.266 26 C 0.130 3.870 27 C -0.097 4.097 28 C -0.129 4.129 29 C -0.146 4.146 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.415 0.585 36 H 0.414 0.586 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.012 0.988 42 H 0.043 0.957 43 H 0.248 0.752 44 H 0.062 0.938 45 H 0.035 0.965 46 H 0.099 0.901 47 H 0.061 0.939 48 H 0.053 0.947 49 H 0.044 0.956 50 H 0.042 0.958 51 H 0.067 0.933 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.800 -15.830 -1.694 26.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C -0.036 4.036 4 C 0.302 3.698 5 O -0.431 6.431 6 N -0.357 5.357 7 C 0.031 3.969 8 H 0.132 0.868 9 C 0.305 3.695 10 O -0.448 6.448 11 N -0.353 5.353 12 C 0.060 3.940 13 H 0.084 0.916 14 C -0.211 4.211 15 C -0.129 4.129 16 C 0.044 3.956 17 N -0.370 5.370 18 C -0.363 4.363 19 H 0.101 0.899 20 C -0.260 4.260 21 N -0.602 5.602 22 Si 0.805 3.195 23 H -0.217 1.217 24 H -0.220 1.220 25 H -0.191 1.191 26 C 0.005 3.995 27 C -0.117 4.117 28 C -0.186 4.186 29 C -0.203 4.203 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.253 0.747 36 H 0.251 0.749 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.030 0.970 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.053 0.947 46 H 0.117 0.883 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.062 0.938 51 H 0.086 0.914 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.561 -15.964 -1.470 26.868 hybrid contribution 0.784 1.332 -0.344 1.583 sum -20.777 -14.633 -1.813 25.477 Atomic orbital electron populations 1.23031 0.78396 1.04158 1.01546 1.87953 1.21994 1.26423 1.95776 1.22331 0.89317 0.86866 1.05084 1.20664 0.89857 0.83841 0.75449 1.90728 1.75201 1.27709 1.49426 1.45517 1.05183 1.09820 1.75148 1.20846 0.81602 0.96192 0.98279 0.86809 1.20656 0.82780 0.88192 0.77886 1.90685 1.61035 1.42534 1.50557 1.45866 1.06186 1.21034 1.62206 1.20753 0.92498 0.87286 0.93465 0.91558 1.22053 1.01863 1.02873 0.94303 1.23443 0.94820 0.98538 0.96111 1.22136 0.93639 0.91775 0.88022 1.46471 1.30877 1.47475 1.12206 1.19425 1.02711 1.19371 0.94745 0.89936 1.25610 1.02387 1.00379 0.97669 1.70010 1.39414 1.36508 1.14303 0.85097 0.79052 0.78048 0.77342 1.21741 1.21985 1.19099 1.22666 0.90638 0.91210 0.94968 1.21519 1.01680 0.96606 0.91866 1.21762 1.00262 0.96178 1.00444 1.21815 1.01734 0.96374 1.00374 0.92460 0.92285 0.88658 0.87939 0.87562 0.74686 0.74903 0.92760 0.90990 0.91971 0.87781 0.97014 0.93850 0.94282 0.92008 0.94737 0.88259 0.92008 0.92784 0.93730 0.93841 0.91405 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.48 16 2 O -0.40 -7.40 10.24 -129.94 -1.33 -8.73 16 3 C 0.04 0.58 6.42 71.24 0.46 1.04 16 4 C 0.51 10.03 6.26 87.66 0.55 10.57 16 5 O -0.55 -14.94 13.62 15.99 0.22 -14.72 16 6 N -0.70 -12.16 4.07 -446.09 -1.82 -13.98 16 7 C 0.14 2.57 2.42 44.24 0.11 2.68 16 8 H 0.11 2.17 7.58 -2.39 -0.02 2.15 16 9 C 0.52 11.63 5.92 87.66 0.52 12.15 16 10 O -0.57 -16.32 15.50 -3.03 -0.05 -16.37 16 11 N -0.70 -14.84 4.85 -442.52 -2.14 -16.99 16 12 C 0.17 4.51 2.28 44.99 0.10 4.61 16 13 H 0.07 2.16 7.50 -2.39 -0.02 2.15 16 14 C -0.15 -3.86 9.43 71.98 0.68 -3.18 16 15 C -0.11 -3.57 3.35 -10.13 -0.03 -3.61 16 16 C 0.17 7.80 7.02 86.44 0.61 8.40 16 17 N -0.64 -32.21 3.70 -716.16 -2.65 -34.87 16 18 C -0.23 -13.01 10.69 84.03 0.90 -12.11 16 19 H 0.08 4.38 7.84 -2.91 -0.02 4.36 16 20 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 21 N -0.95 -57.35 11.43 21.65 0.25 -57.10 16 22 Si 0.98 45.49 29.56 68.60 2.03 47.52 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 C 0.13 4.80 8.38 86.49 0.73 5.53 16 27 C -0.10 -1.60 2.70 -10.80 -0.03 -1.62 16 28 C -0.13 -2.33 7.72 71.98 0.56 -1.77 16 29 C -0.15 -2.52 8.79 71.98 0.63 -1.89 16 30 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.42 6.45 7.79 -92.71 -0.72 5.73 16 36 H 0.41 6.70 8.02 -92.71 -0.74 5.96 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 41 H 0.01 0.58 8.04 -2.39 -0.02 0.56 16 42 H 0.04 2.23 7.20 -2.39 -0.02 2.22 16 43 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 44 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.03 1.28 8.10 -2.39 -0.02 1.26 16 46 H 0.10 1.39 7.56 -2.39 -0.02 1.38 16 47 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 48 H 0.05 1.11 7.53 -2.39 -0.02 1.09 16 49 H 0.04 0.89 5.78 -2.39 -0.01 0.88 16 50 H 0.04 0.90 7.22 -2.39 -0.02 0.89 16 51 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 52 H 0.06 0.97 7.60 -2.39 -0.02 0.95 16 Total: -1.00 -76.09 415.96 1.44 -74.65 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -0.55 Total: 21.66 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 7.48 Total: 18.91 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -6.37 Total: -122.93 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -1.16 Total: -39.82 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -76.09 1.44 -74.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506658900.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.028 kcal (2) G-P(sol) polarization free energy of solvation -76.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds