Wall clock time and date at job start Wed Apr 1 2020 01:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00243 * 2 1 4 4 C 1.50699 * 109.47272 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99988 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00040 * 179.97438 * 4 3 2 7 7 C 1.46498 * 119.99710 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47232 * 324.99598 * 7 6 4 9 9 C 1.50706 * 109.46547 * 205.00163 * 7 6 4 10 10 O 1.21279 * 120.00124 * 336.19374 * 9 7 6 11 11 N 1.34775 * 119.99737 * 156.20045 * 9 7 6 12 12 C 1.46501 * 120.00351 * 184.40155 * 11 9 7 13 13 H 1.09002 * 109.46736 * 34.99949 * 12 11 9 14 14 C 1.52997 * 109.47120 * 275.00136 * 12 11 9 15 15 C 1.53000 * 109.47402 * 154.99720 * 12 11 9 16 16 C 1.53499 * 114.20791 * 294.78134 * 15 12 11 17 17 N 1.47061 * 87.98273 * 220.34683 * 16 15 12 18 18 C 1.36940 * 136.05250 * 207.08419 * 17 16 15 19 19 H 1.07999 * 120.00139 * 4.34607 * 18 17 16 20 20 C 1.38812 * 120.00103 * 184.34709 * 18 17 16 21 21 N 1.31611 * 120.00305 * 172.89913 * 20 18 17 22 22 Si 1.86806 * 119.99785 * 352.90097 * 20 18 17 23 23 H 1.48494 * 109.47141 * 176.59509 * 22 20 18 24 24 H 1.48502 * 109.47145 * 296.59792 * 22 20 18 25 25 H 1.48506 * 109.47013 * 56.59768 * 22 20 18 26 26 C 1.47058 * 87.88890 * 27.34499 * 17 16 15 27 27 C 1.52998 * 109.47288 * 85.00432 * 7 6 4 28 28 C 1.52995 * 109.47038 * 176.61086 * 27 7 6 29 29 C 1.52999 * 109.47102 * 296.61016 * 27 7 6 30 30 H 1.09001 * 109.47023 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46910 * 300.00659 * 1 2 3 32 32 H 1.08995 * 109.46554 * 60.00446 * 1 2 3 33 33 H 1.08992 * 109.47110 * 59.99475 * 3 2 1 34 34 H 1.09005 * 109.46693 * 299.99516 * 3 2 1 35 35 H 0.96997 * 119.99672 * 0.02562 * 6 4 3 36 36 H 0.97005 * 120.00210 * 4.40025 * 11 9 7 37 37 H 1.09000 * 109.47422 * 304.33077 * 14 12 11 38 38 H 1.09006 * 109.47200 * 64.32848 * 14 12 11 39 39 H 1.09001 * 109.47356 * 184.33049 * 14 12 11 40 40 H 1.08996 * 113.41184 * 67.98618 * 15 12 11 41 41 H 1.08999 * 113.46073 * 105.56350 * 16 15 12 42 42 H 1.09000 * 113.51704 * 335.13914 * 16 15 12 43 43 H 0.97005 * 119.99941 * 356.08600 * 21 20 18 44 44 H 1.08999 * 113.47311 * 87.43376 * 26 17 16 45 45 H 1.09001 * 113.46757 * 217.87755 * 26 17 16 46 46 H 1.09004 * 109.47127 * 56.60906 * 27 7 6 47 47 H 1.09001 * 109.47261 * 53.60670 * 28 27 7 48 48 H 1.09002 * 109.47221 * 173.60408 * 28 27 7 49 49 H 1.08994 * 109.47439 * 293.60417 * 28 27 7 50 50 H 1.09005 * 109.47138 * 59.99754 * 29 27 7 51 51 H 1.08997 * 109.47364 * 179.97438 * 29 27 7 52 52 H 1.09001 * 109.46769 * 300.00404 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2766 2.2968 0.0002 7 6 5.7369 2.1810 0.0003 8 1 6.0326 1.3134 0.5901 9 6 6.3394 3.4253 0.6004 10 8 5.7157 4.4654 0.5927 11 7 7.5713 3.3821 1.1454 12 6 8.1183 4.5652 1.8142 13 1 7.3146 5.1010 2.3194 14 6 8.7692 5.4822 0.7768 15 6 9.1665 4.1318 2.8409 16 6 8.6024 3.3082 4.0070 17 7 9.4968 4.0584 4.9014 18 6 10.1124 3.8255 6.1022 19 1 10.0292 2.8571 6.5729 20 6 10.8435 4.8343 6.7146 21 7 11.3174 4.6587 7.9297 22 14 11.1545 6.4410 5.8138 23 1 11.8823 7.3768 6.7078 24 1 11.9709 6.1787 4.6014 25 1 9.8572 7.0445 5.4159 26 6 9.4336 5.1712 3.9420 27 6 6.2355 2.0149 -1.4366 28 6 7.7650 1.9788 -1.4448 29 6 5.6914 0.7082 -2.0174 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.8594 3.1725 -0.0001 36 1 8.0958 2.5677 1.0948 37 1 9.5206 4.9237 0.2186 38 1 8.0076 5.8526 0.0904 39 1 9.2431 6.3238 1.2821 40 1 10.0658 3.7115 2.3908 41 1 8.8418 2.2466 3.9442 42 1 7.5448 3.4911 4.1972 43 1 11.1084 3.8479 8.4195 44 1 8.5952 5.8460 4.1144 45 1 10.3812 5.6969 3.8240 46 1 5.8886 2.8533 -2.0408 47 1 8.1141 1.2131 -0.7521 48 1 8.1176 1.7474 -2.4499 49 1 8.1530 2.9501 -1.1384 50 1 4.6016 0.7339 -2.0115 51 1 6.0461 0.5901 -3.0413 52 1 6.0382 -0.1301 -1.4132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506658904.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:51 Heat of formation + Delta-G solvation = -58.409412 kcal Electronic energy + Delta-G solvation = -31065.775344 eV Core-core repulsion = 26874.854352 eV Total energy + Delta-G solvation = -4190.920992 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.00017 -39.77483 -38.72130 -37.82346 -36.17350 -35.25867 -33.71342 -32.42992 -30.97204 -29.66348 -27.86757 -27.57736 -27.15939 -25.83610 -25.29316 -23.92856 -21.66174 -21.15431 -20.65185 -20.39426 -19.55633 -18.21890 -17.56932 -17.35376 -16.79093 -16.70058 -16.28994 -15.90999 -15.68401 -15.29981 -15.01842 -14.85584 -14.52375 -14.05779 -13.83348 -13.64727 -13.46837 -13.31158 -13.08123 -12.99438 -12.85980 -12.60028 -12.41240 -12.29944 -12.01554 -11.89741 -11.83736 -11.83252 -11.35913 -11.29875 -11.10575 -11.09181 -10.77044 -10.45257 -10.24258 -10.21204 -10.09445 -10.04990 -9.39798 -9.23341 -9.12678 -9.05964 -8.92833 -7.19166 -6.32705 -3.24790 2.16168 2.29497 2.48613 3.06798 3.38440 3.42216 3.63623 3.66867 4.27014 4.38494 4.48239 4.57939 4.60512 4.64744 4.66749 4.72418 4.87494 4.88958 4.93887 4.94610 5.01984 5.06991 5.24702 5.29341 5.34243 5.43677 5.44298 5.48688 5.58797 5.64648 5.70177 5.78308 5.81743 5.89696 5.97739 6.01133 6.10631 6.17379 6.18058 6.20415 6.27963 6.32066 6.45549 6.52028 6.86224 7.07382 7.14187 7.34527 7.87815 8.00173 8.21684 8.95447 9.47966 10.33519 11.18464 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015405 B = 0.002442 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.131612 B =11464.234150 C =12338.302231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.044 3.956 4 C 0.516 3.484 5 O -0.511 6.511 6 N -0.713 5.713 7 C 0.133 3.867 8 H 0.111 0.889 9 C 0.516 3.484 10 O -0.540 6.540 11 N -0.712 5.712 12 C 0.152 3.848 13 H 0.090 0.910 14 C -0.160 4.160 15 C -0.143 4.143 16 C 0.130 3.870 17 N -0.628 5.628 18 C -0.305 4.305 19 H 0.083 0.917 20 C -0.026 4.026 21 N -0.933 5.933 22 Si 1.071 2.929 23 H -0.295 1.295 24 H -0.292 1.292 25 H -0.287 1.287 26 C 0.112 3.888 27 C -0.098 4.098 28 C -0.158 4.158 29 C -0.138 4.138 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.410 0.590 36 H 0.403 0.597 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.044 0.956 42 H 0.036 0.964 43 H 0.261 0.739 44 H 0.046 0.954 45 H 0.053 0.947 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.055 0.945 51 H 0.051 0.949 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.295 -4.724 -23.745 29.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.037 4.037 4 C 0.301 3.699 5 O -0.385 6.385 6 N -0.368 5.368 7 C 0.025 3.975 8 H 0.129 0.871 9 C 0.301 3.699 10 O -0.417 6.417 11 N -0.362 5.362 12 C 0.048 3.952 13 H 0.108 0.892 14 C -0.218 4.218 15 C -0.163 4.163 16 C 0.003 3.997 17 N -0.356 5.356 18 C -0.431 4.431 19 H 0.100 0.900 20 C -0.225 4.225 21 N -0.575 5.575 22 Si 0.903 3.097 23 H -0.222 1.222 24 H -0.221 1.221 25 H -0.214 1.214 26 C -0.014 4.014 27 C -0.118 4.118 28 C -0.216 4.216 29 C -0.195 4.195 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.247 0.753 36 H 0.238 0.762 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.096 0.904 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.074 0.926 51 H 0.070 0.930 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.364 -3.553 -23.317 28.707 hybrid contribution -1.067 -1.166 -0.012 1.580 sum -17.431 -4.719 -23.329 29.502 Atomic orbital electron populations 1.22853 0.80204 1.03417 1.00213 1.88013 1.19901 1.25010 1.95451 1.22206 0.91351 0.87169 1.02929 1.20175 0.88691 0.84443 0.76548 1.90758 1.74309 1.26317 1.47098 1.45593 1.05412 1.09730 1.76111 1.20957 0.81001 0.97527 0.98033 0.87103 1.20414 0.81838 0.89755 0.77903 1.90686 1.61425 1.31833 1.57714 1.46161 1.16656 1.16595 1.56835 1.21056 0.96157 0.85588 0.92421 0.89244 1.22136 1.00690 0.99834 0.99184 1.23619 0.98275 1.00820 0.93563 1.22290 0.93955 0.95939 0.87482 1.45960 1.53465 1.13396 1.22792 1.20150 1.28746 0.99695 0.94536 0.89959 1.25726 0.97629 1.02243 0.96854 1.70917 1.47780 1.29048 1.09778 0.83710 0.76056 0.75955 0.73929 1.22219 1.22062 1.21439 1.22708 0.99319 0.92184 0.87227 1.21442 0.96494 0.99998 0.93860 1.22009 0.94014 1.02604 1.02991 1.21872 1.01263 0.96271 1.00096 0.88996 0.93678 0.93772 0.89958 0.90095 0.75275 0.76221 0.92441 0.92314 0.91236 0.88181 0.93797 0.94618 0.92933 0.93667 0.92943 0.90435 0.91928 0.91622 0.91736 0.92552 0.93002 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.62 10.24 -55.14 -0.56 -4.19 16 3 C 0.04 0.33 6.42 36.01 0.23 0.56 16 4 C 0.52 5.31 6.40 -10.99 -0.07 5.24 16 5 O -0.51 -7.08 13.63 -14.35 -0.20 -7.27 16 6 N -0.71 -6.52 4.98 -54.93 -0.27 -6.79 16 7 C 0.13 1.29 2.25 -69.08 -0.16 1.13 16 8 H 0.11 1.15 7.58 -51.93 -0.39 0.75 16 9 C 0.52 5.83 6.26 -10.98 -0.07 5.76 16 10 O -0.54 -7.53 15.69 5.56 0.09 -7.44 16 11 N -0.71 -7.65 3.88 -53.80 -0.21 -7.86 16 12 C 0.15 1.97 2.31 -67.93 -0.16 1.81 16 13 H 0.09 1.33 7.49 -51.93 -0.39 0.94 16 14 C -0.16 -1.83 9.48 37.16 0.35 -1.48 16 15 C -0.14 -2.24 3.52 -89.97 -0.32 -2.56 16 16 C 0.13 2.46 8.14 -8.51 -0.07 2.39 16 17 N -0.63 -15.29 3.70 -184.62 -0.68 -15.98 16 18 C -0.31 -8.82 11.08 -15.06 -0.17 -8.99 16 19 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 20 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 21 N -0.93 -29.58 13.70 55.49 0.76 -28.82 16 22 Si 1.07 26.67 25.09 -169.99 -4.27 22.40 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.29 -6.81 6.61 56.52 0.37 -6.44 16 25 H -0.29 -6.66 6.26 56.52 0.35 -6.30 16 26 C 0.11 2.27 5.33 -8.38 -0.04 2.23 16 27 C -0.10 -0.82 2.70 -90.62 -0.24 -1.07 16 28 C -0.16 -1.15 7.95 37.16 0.30 -0.86 16 29 C -0.14 -1.25 7.76 37.16 0.29 -0.96 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.41 3.30 7.77 -40.82 -0.32 2.98 16 36 H 0.40 3.62 7.60 -40.82 -0.31 3.31 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 44 H 0.05 0.91 7.71 -51.93 -0.40 0.51 16 45 H 0.05 1.10 4.45 -51.93 -0.23 0.87 16 46 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.42 7.94 -51.93 -0.41 0.01 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.50 6.67 -51.93 -0.35 0.15 16 50 H 0.06 0.58 5.69 -51.93 -0.30 0.28 16 51 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 LS Contribution 408.36 15.07 6.15 6.15 Total: -1.00 -36.29 408.36 -7.36 -43.65 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -9.06 Total: 2.51 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 0.89 Total: 3.63 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.40 Total: -59.45 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.67 Total: -18.90 kcal Atomic # 14 Polarization: 26.67 SS G_CDS: -4.27 Total: 22.40 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.29 -7.36 -43.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506658904.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.756 kcal (2) G-P(sol) polarization free energy of solvation -36.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds