Wall clock time and date at job start Wed Apr 1 2020 01:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00243 * 2 1 4 4 C 1.50699 * 109.47272 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99988 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00040 * 179.97438 * 4 3 2 7 7 C 1.46498 * 119.99710 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47232 * 324.99598 * 7 6 4 9 9 C 1.50706 * 109.46547 * 205.00163 * 7 6 4 10 10 O 1.21279 * 120.00124 * 336.19374 * 9 7 6 11 11 N 1.34775 * 119.99737 * 156.20045 * 9 7 6 12 12 C 1.46501 * 120.00351 * 184.40155 * 11 9 7 13 13 H 1.09002 * 109.46736 * 34.99949 * 12 11 9 14 14 C 1.52997 * 109.47120 * 275.00136 * 12 11 9 15 15 C 1.53000 * 109.47402 * 154.99720 * 12 11 9 16 16 C 1.53499 * 114.20791 * 294.78134 * 15 12 11 17 17 N 1.47061 * 87.98273 * 220.34683 * 16 15 12 18 18 C 1.36940 * 136.05250 * 207.08419 * 17 16 15 19 19 H 1.07999 * 120.00139 * 4.34607 * 18 17 16 20 20 C 1.38812 * 120.00103 * 184.34709 * 18 17 16 21 21 N 1.31611 * 120.00305 * 172.89913 * 20 18 17 22 22 Si 1.86806 * 119.99785 * 352.90097 * 20 18 17 23 23 H 1.48494 * 109.47141 * 176.59509 * 22 20 18 24 24 H 1.48502 * 109.47145 * 296.59792 * 22 20 18 25 25 H 1.48506 * 109.47013 * 56.59768 * 22 20 18 26 26 C 1.47058 * 87.88890 * 27.34499 * 17 16 15 27 27 C 1.52998 * 109.47288 * 85.00432 * 7 6 4 28 28 C 1.52995 * 109.47038 * 176.61086 * 27 7 6 29 29 C 1.52999 * 109.47102 * 296.61016 * 27 7 6 30 30 H 1.09001 * 109.47023 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46910 * 300.00659 * 1 2 3 32 32 H 1.08995 * 109.46554 * 60.00446 * 1 2 3 33 33 H 1.08992 * 109.47110 * 59.99475 * 3 2 1 34 34 H 1.09005 * 109.46693 * 299.99516 * 3 2 1 35 35 H 0.96997 * 119.99672 * 0.02562 * 6 4 3 36 36 H 0.97005 * 120.00210 * 4.40025 * 11 9 7 37 37 H 1.09000 * 109.47422 * 304.33077 * 14 12 11 38 38 H 1.09006 * 109.47200 * 64.32848 * 14 12 11 39 39 H 1.09001 * 109.47356 * 184.33049 * 14 12 11 40 40 H 1.08996 * 113.41184 * 67.98618 * 15 12 11 41 41 H 1.08999 * 113.46073 * 105.56350 * 16 15 12 42 42 H 1.09000 * 113.51704 * 335.13914 * 16 15 12 43 43 H 0.97005 * 119.99941 * 356.08600 * 21 20 18 44 44 H 1.08999 * 113.47311 * 87.43376 * 26 17 16 45 45 H 1.09001 * 113.46757 * 217.87755 * 26 17 16 46 46 H 1.09004 * 109.47127 * 56.60906 * 27 7 6 47 47 H 1.09001 * 109.47261 * 53.60670 * 28 27 7 48 48 H 1.09002 * 109.47221 * 173.60408 * 28 27 7 49 49 H 1.08994 * 109.47439 * 293.60417 * 28 27 7 50 50 H 1.09005 * 109.47138 * 59.99754 * 29 27 7 51 51 H 1.08997 * 109.47364 * 179.97438 * 29 27 7 52 52 H 1.09001 * 109.46769 * 300.00404 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2766 2.2968 0.0002 7 6 5.7369 2.1810 0.0003 8 1 6.0326 1.3134 0.5901 9 6 6.3394 3.4253 0.6004 10 8 5.7157 4.4654 0.5927 11 7 7.5713 3.3821 1.1454 12 6 8.1183 4.5652 1.8142 13 1 7.3146 5.1010 2.3194 14 6 8.7692 5.4822 0.7768 15 6 9.1665 4.1318 2.8409 16 6 8.6024 3.3082 4.0070 17 7 9.4968 4.0584 4.9014 18 6 10.1124 3.8255 6.1022 19 1 10.0292 2.8571 6.5729 20 6 10.8435 4.8343 6.7146 21 7 11.3174 4.6587 7.9297 22 14 11.1545 6.4410 5.8138 23 1 11.8823 7.3768 6.7078 24 1 11.9709 6.1787 4.6014 25 1 9.8572 7.0445 5.4159 26 6 9.4336 5.1712 3.9420 27 6 6.2355 2.0149 -1.4366 28 6 7.7650 1.9788 -1.4448 29 6 5.6914 0.7082 -2.0174 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.8594 3.1725 -0.0001 36 1 8.0958 2.5677 1.0948 37 1 9.5206 4.9237 0.2186 38 1 8.0076 5.8526 0.0904 39 1 9.2431 6.3238 1.2821 40 1 10.0658 3.7115 2.3908 41 1 8.8418 2.2466 3.9442 42 1 7.5448 3.4911 4.1972 43 1 11.1084 3.8479 8.4195 44 1 8.5952 5.8460 4.1144 45 1 10.3812 5.6969 3.8240 46 1 5.8886 2.8533 -2.0408 47 1 8.1141 1.2131 -0.7521 48 1 8.1176 1.7474 -2.4499 49 1 8.1530 2.9501 -1.1384 50 1 4.6016 0.7339 -2.0115 51 1 6.0461 0.5901 -3.0413 52 1 6.0382 -0.1301 -1.4132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506658904.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:50 Heat of formation + Delta-G solvation = -86.122284 kcal Electronic energy + Delta-G solvation = -31066.977064 eV Core-core repulsion = 26874.854352 eV Total energy + Delta-G solvation = -4192.122712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.87260 -40.82319 -39.99347 -38.49612 -36.97741 -36.40320 -34.64890 -34.35958 -32.10556 -30.31430 -29.59100 -28.31060 -27.74994 -26.94389 -26.36016 -25.40397 -22.93607 -21.97293 -21.63717 -21.39367 -20.91695 -19.57716 -19.06325 -18.15431 -17.63499 -17.40480 -17.28067 -17.04920 -16.59086 -16.36948 -15.92944 -15.85753 -15.62197 -15.45502 -15.13608 -15.02166 -14.56047 -14.25639 -14.12510 -13.71146 -13.64857 -13.60148 -13.32616 -13.17912 -13.16316 -13.06307 -12.94755 -12.59967 -12.54224 -12.37308 -12.36384 -12.05491 -12.00671 -11.79964 -11.66983 -11.31846 -11.08172 -11.02269 -10.90804 -10.78842 -10.76235 -10.17491 -10.06344 -9.23930 -8.65295 -5.48847 1.34099 1.38470 1.49397 1.54024 1.65982 1.69141 2.21260 2.54749 2.95748 3.09710 3.18345 3.38426 3.62087 3.69574 3.79843 3.84678 3.90681 4.16883 4.20086 4.24771 4.25231 4.29206 4.34490 4.49358 4.50260 4.56097 4.56687 4.63891 4.64731 4.73711 4.78236 4.80467 4.86943 4.87851 4.95048 4.97797 5.05696 5.13995 5.17084 5.20976 5.32423 5.37618 5.43518 5.45374 5.50378 5.93180 6.00665 6.44134 6.46167 6.67967 7.10513 7.14096 7.31064 8.25251 8.87971 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015405 B = 0.002442 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.131612 B =11464.234150 C =12338.302231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.043 3.957 4 C 0.513 3.487 5 O -0.553 6.553 6 N -0.706 5.706 7 C 0.136 3.864 8 H 0.104 0.896 9 C 0.522 3.478 10 O -0.564 6.564 11 N -0.704 5.704 12 C 0.163 3.837 13 H 0.073 0.927 14 C -0.155 4.155 15 C -0.105 4.105 16 C 0.126 3.874 17 N -0.663 5.663 18 C -0.293 4.293 19 H 0.048 0.952 20 C -0.088 4.088 21 N -0.970 5.970 22 Si 1.109 2.891 23 H -0.306 1.306 24 H -0.264 1.264 25 H -0.261 1.261 26 C 0.101 3.899 27 C -0.091 4.091 28 C -0.157 4.157 29 C -0.131 4.131 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.417 0.583 36 H 0.413 0.587 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.119 0.881 41 H 0.050 0.950 42 H 0.039 0.961 43 H 0.245 0.755 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.064 0.936 50 H 0.042 0.958 51 H 0.064 0.936 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.092 -3.594 -26.968 32.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C -0.036 4.036 4 C 0.300 3.700 5 O -0.430 6.430 6 N -0.362 5.362 7 C 0.027 3.973 8 H 0.122 0.878 9 C 0.307 3.693 10 O -0.443 6.443 11 N -0.356 5.356 12 C 0.057 3.943 13 H 0.091 0.909 14 C -0.213 4.213 15 C -0.125 4.125 16 C 0.001 3.999 17 N -0.391 5.391 18 C -0.421 4.421 19 H 0.065 0.935 20 C -0.280 4.280 21 N -0.615 5.615 22 Si 0.935 3.065 23 H -0.235 1.235 24 H -0.190 1.190 25 H -0.186 1.186 26 C -0.024 4.024 27 C -0.111 4.111 28 C -0.215 4.215 29 C -0.188 4.188 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.255 0.745 36 H 0.251 0.749 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.137 0.863 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.086 0.914 48 H 0.094 0.906 49 H 0.083 0.917 50 H 0.061 0.939 51 H 0.083 0.917 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.203 -2.443 -26.599 31.771 hybrid contribution -0.936 -1.634 0.989 2.127 sum -18.138 -4.077 -25.610 31.647 Atomic orbital electron populations 1.23030 0.78340 1.04160 1.01585 1.87956 1.22053 1.26475 1.95785 1.22343 0.89166 0.86889 1.05189 1.20738 0.89972 0.83873 0.75435 1.90737 1.75241 1.27800 1.49194 1.45581 1.05238 1.09908 1.75463 1.20943 0.81375 0.96234 0.98727 0.87803 1.20579 0.81549 0.89756 0.77393 1.90682 1.62016 1.32832 1.58720 1.46021 1.16718 1.16514 1.56338 1.20800 0.94856 0.86286 0.92332 0.90916 1.22093 1.00995 0.99608 0.98635 1.23303 0.99292 0.97373 0.92502 1.22493 0.93314 0.96517 0.87617 1.46101 1.54499 1.16396 1.22138 1.20010 1.27998 0.98101 0.95955 0.93454 1.27152 0.98031 1.05824 0.96963 1.71027 1.50229 1.28846 1.11441 0.83287 0.77450 0.72060 0.73720 1.23458 1.19002 1.18641 1.22939 0.99515 0.92384 0.87598 1.21394 0.97401 0.99553 0.92719 1.22009 0.92849 1.02779 1.03839 1.21781 1.00355 0.96068 1.00595 0.88718 0.92572 0.92056 0.88021 0.87203 0.74476 0.74935 0.90575 0.92354 0.91112 0.86345 0.93161 0.94353 0.94609 0.93106 0.92870 0.90196 0.91426 0.90643 0.91703 0.93896 0.91702 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.49 16 2 O -0.40 -7.63 10.24 -129.94 -1.33 -8.96 16 3 C 0.04 0.59 6.42 71.24 0.46 1.04 16 4 C 0.51 10.13 6.40 87.66 0.56 10.69 16 5 O -0.55 -15.34 13.63 16.00 0.22 -15.12 16 6 N -0.71 -11.95 4.98 -446.09 -2.22 -14.17 16 7 C 0.14 2.41 2.25 44.25 0.10 2.51 16 8 H 0.10 2.04 7.58 -2.39 -0.02 2.02 16 9 C 0.52 10.62 6.26 87.66 0.55 11.17 16 10 O -0.56 -14.51 15.69 -3.03 -0.05 -14.55 16 11 N -0.70 -13.13 3.88 -442.53 -1.72 -14.85 16 12 C 0.16 3.68 2.31 44.99 0.10 3.78 16 13 H 0.07 1.96 7.49 -2.39 -0.02 1.95 16 14 C -0.16 -2.94 9.48 71.98 0.68 -2.26 16 15 C -0.11 -2.96 3.52 -10.37 -0.04 -2.99 16 16 C 0.13 4.55 8.14 83.18 0.68 5.22 16 17 N -0.66 -31.61 3.70 -738.01 -2.73 -34.33 16 18 C -0.29 -17.24 11.08 84.03 0.93 -16.31 16 19 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 20 C -0.09 -5.34 5.50 84.86 0.47 -4.87 16 21 N -0.97 -63.53 13.70 21.65 0.30 -63.23 16 22 Si 1.11 53.01 25.09 68.60 1.72 54.73 16 23 H -0.31 -15.11 7.11 99.48 0.71 -14.41 16 24 H -0.26 -11.27 6.61 99.48 0.66 -10.61 16 25 H -0.26 -11.22 6.26 99.48 0.62 -10.59 16 26 C 0.10 3.82 5.33 83.27 0.44 4.26 16 27 C -0.09 -1.34 2.70 -10.80 -0.03 -1.37 16 28 C -0.16 -1.86 7.95 71.98 0.57 -1.29 16 29 C -0.13 -2.22 7.76 71.98 0.56 -1.66 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.42 5.98 7.77 -92.71 -0.72 5.26 16 36 H 0.41 6.12 7.60 -92.70 -0.70 5.42 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 42 H 0.04 1.39 8.10 -2.39 -0.02 1.37 16 43 H 0.24 16.15 8.73 -92.70 -0.81 15.34 16 44 H 0.05 1.90 7.71 -2.39 -0.02 1.88 16 45 H 0.05 2.04 4.45 -2.39 -0.01 2.03 16 46 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.07 0.74 7.94 -2.39 -0.02 0.72 16 48 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.06 0.78 6.67 -2.39 -0.02 0.76 16 50 H 0.04 0.85 5.69 -2.38 -0.01 0.83 16 51 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.05 1.02 7.75 -2.39 -0.02 1.00 16 Total: -1.00 -81.46 408.36 0.80 -80.66 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -0.67 Total: 20.42 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 7.28 Total: 9.42 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -6.37 Total: -126.58 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -1.16 Total: -38.64 kcal Atomic # 14 Polarization: 53.01 SS G_CDS: 1.72 Total: 54.73 kcal Total: -81.46 0.80 -80.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506658904.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.464 kcal (2) G-P(sol) polarization free energy of solvation -81.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds