Wall clock time and date at job start Wed Apr 1 2020 01:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47189 * 2 1 4 4 C 1.52999 * 109.47197 * 120.00368 * 2 1 3 5 5 C 1.53005 * 109.47150 * 185.00058 * 4 2 1 6 6 C 1.52999 * 109.47150 * 180.02562 * 5 4 2 7 7 N 1.46899 * 109.47140 * 179.97438 * 6 5 4 8 8 C 1.46896 * 111.00031 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47304 * 180.02562 * 8 7 6 10 10 O 1.21297 * 119.99858 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99840 * 179.97438 * 9 8 7 12 12 C 1.37096 * 119.99789 * 179.97438 * 11 9 8 13 13 H 1.08008 * 119.99861 * 0.02562 * 12 11 9 14 14 C 1.38952 * 120.00428 * 180.02562 * 12 11 9 15 15 N 1.31416 * 119.99566 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00211 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47151 * 60.00082 * 16 14 12 18 18 H 1.48506 * 109.46966 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46853 * 299.99607 * 16 14 12 20 20 N 1.46506 * 109.47182 * 240.00413 * 2 1 3 21 21 C 1.34773 * 119.99969 * 84.72073 * 20 2 1 22 22 O 1.21281 * 120.00220 * 0.02562 * 21 20 2 23 23 C 1.50706 * 120.00080 * 180.02562 * 21 20 2 24 24 H 1.09000 * 109.48020 * 304.98277 * 23 21 20 25 25 C 1.53085 * 109.47672 * 65.00004 * 23 21 20 26 26 C 1.53178 * 109.16477 * 177.59379 * 25 23 21 27 27 C 1.53183 * 109.03498 * 303.02623 * 26 25 23 28 28 C 1.53085 * 109.16533 * 56.97421 * 27 26 25 29 29 O 1.42894 * 109.48237 * 184.94760 * 23 21 20 30 30 H 1.09002 * 109.47097 * 300.00189 * 1 2 3 31 31 H 1.09007 * 109.47360 * 59.99353 * 1 2 3 32 32 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47238 * 304.99606 * 4 2 1 34 34 H 1.09004 * 109.47119 * 65.00146 * 4 2 1 35 35 H 1.09006 * 109.46641 * 299.99859 * 5 4 2 36 36 H 1.09000 * 109.47259 * 59.99588 * 5 4 2 37 37 H 1.08997 * 109.47007 * 300.00047 * 6 5 4 38 38 H 1.09000 * 109.47376 * 59.99659 * 6 5 4 39 39 H 1.00899 * 111.00165 * 303.95318 * 7 6 5 40 40 H 1.09003 * 109.46927 * 300.00456 * 8 7 6 41 41 H 1.09001 * 109.47024 * 60.00157 * 8 7 6 42 42 H 0.97002 * 120.00332 * 0.02562 * 11 9 8 43 43 H 0.96996 * 120.00120 * 180.02562 * 15 14 12 44 44 H 0.97005 * 119.99811 * 265.00126 * 20 2 1 45 45 H 1.09001 * 109.52778 * 297.49498 * 25 23 21 46 46 H 1.09002 * 109.52867 * 57.62931 * 25 23 21 47 47 H 1.09003 * 109.54186 * 62.88560 * 26 25 23 48 48 H 1.08995 * 109.54965 * 183.15554 * 26 25 23 49 49 H 1.09002 * 109.52416 * 176.88289 * 27 26 25 50 50 H 1.09006 * 109.51627 * 297.06717 * 27 26 25 51 51 H 1.09002 * 109.48308 * 62.37530 * 28 27 26 52 52 H 1.09006 * 109.48532 * 182.40176 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0749 -1.3352 2.5625 7 7 5.5390 -1.2321 2.6240 8 6 6.0653 -1.9149 3.8134 9 6 7.5666 -1.7875 3.8426 10 8 8.1416 -1.1865 2.9598 11 7 8.2703 -2.3405 4.8504 12 6 9.6361 -2.2250 4.8767 13 1 10.1482 -1.6906 4.0901 14 6 10.3618 -2.7956 5.9153 15 7 9.7388 -3.4463 6.8721 16 14 12.2227 -2.6376 5.9515 17 1 12.5967 -1.2013 5.9993 18 1 12.7548 -3.3285 7.1536 19 1 12.7959 -3.2581 4.7303 20 7 2.0183 -0.6905 -1.1963 21 6 2.1417 -0.0195 -2.3585 22 8 1.8489 1.1561 -2.4141 23 6 2.6435 -0.7300 -3.5892 24 1 3.6061 -1.1939 -3.3740 25 6 1.6381 -1.8081 -4.0019 26 6 2.1253 -2.4847 -5.2868 27 6 2.3139 -1.4197 -6.3716 28 6 3.2932 -0.3566 -5.8674 29 8 2.7951 0.2108 -4.6541 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6054 -0.2619 2.1369 34 1 1.7516 -1.7716 1.2054 35 1 3.9994 -1.0729 0.4258 36 1 3.8532 0.4369 1.3573 37 1 3.6403 -0.8762 3.4504 38 1 3.7866 -2.3854 2.5184 39 1 5.9626 -1.5929 1.7824 40 1 5.6447 -1.4592 4.7098 41 1 5.7904 -2.9691 3.7785 42 1 7.8105 -2.8208 5.5566 43 1 10.2452 -3.8442 7.5973 44 1 2.2490 -1.6318 -1.1527 45 1 1.5542 -2.5508 -3.2085 46 1 0.6644 -1.3505 -4.1768 47 1 3.0752 -2.9849 -5.0979 48 1 1.3866 -3.2149 -5.6172 49 1 2.7133 -1.8846 -7.2730 50 1 1.3541 -0.9540 -6.5955 51 1 4.2644 -0.8156 -5.6822 52 1 3.3985 0.4263 -6.6186 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506920213.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:26 Heat of formation + Delta-G solvation = -169.028938 kcal Electronic energy + Delta-G solvation = -29250.093637 eV Core-core repulsion = 25054.375823 eV Total energy + Delta-G solvation = -4195.717814 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.39483 -40.16352 -39.68905 -37.94492 -36.64380 -35.85240 -34.71345 -33.70841 -33.26226 -32.41757 -31.05346 -28.64358 -26.85903 -26.54578 -24.94204 -24.79487 -22.60502 -22.13117 -21.59355 -21.19744 -21.03210 -19.90231 -18.53889 -17.93698 -17.71320 -17.13620 -16.78547 -16.59519 -16.43724 -16.16391 -16.00492 -15.57324 -15.45292 -15.41530 -15.17829 -15.11894 -14.58602 -14.36891 -14.09721 -14.06755 -13.69410 -13.63899 -13.48353 -13.25307 -13.07541 -12.96767 -12.75841 -12.52178 -12.44085 -12.39134 -12.20392 -12.14664 -12.08581 -11.96814 -11.68951 -11.56169 -11.50325 -11.41662 -10.75053 -10.48209 -10.35669 -10.11239 -10.02175 -9.28475 -8.46904 -5.95826 1.39756 1.41769 1.52687 1.54260 1.85617 2.04846 2.29228 2.93436 3.03046 3.20223 3.50542 3.59092 3.75108 3.81113 3.88076 3.99982 4.03554 4.07404 4.11036 4.18675 4.32123 4.37204 4.44528 4.46456 4.51466 4.58615 4.62053 4.66672 4.72022 4.77826 4.83511 4.84081 4.87968 4.93453 4.99959 5.06651 5.09733 5.13700 5.26055 5.30669 5.34170 5.40137 5.42727 5.55909 5.91143 6.09440 6.14209 6.44329 6.55066 6.60005 7.12142 7.22634 7.55789 8.11414 8.70132 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.001683 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.005445 B =16636.566475 C =17993.075991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.142 3.858 3 H 0.060 0.940 4 C -0.111 4.111 5 C -0.112 4.112 6 C 0.062 3.938 7 N -0.692 5.692 8 C 0.066 3.934 9 C 0.435 3.565 10 O -0.626 6.626 11 N -0.572 5.572 12 C -0.336 4.336 13 H 0.078 0.922 14 C -0.012 4.012 15 N -0.919 5.919 16 Si 0.993 3.007 17 H -0.273 1.273 18 H -0.269 1.269 19 H -0.271 1.271 20 N -0.705 5.705 21 C 0.515 3.485 22 O -0.574 6.574 23 C 0.071 3.929 24 H 0.101 0.899 25 C -0.138 4.138 26 C -0.120 4.120 27 C -0.156 4.156 28 C 0.051 3.949 29 O -0.393 6.393 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.343 0.657 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.415 0.585 45 H 0.103 0.897 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.094 0.906 50 H 0.062 0.938 51 H 0.063 0.937 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.567 -3.963 -19.314 29.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.078 0.922 4 C -0.149 4.149 5 C -0.150 4.150 6 C -0.067 4.067 7 N -0.324 5.324 8 C -0.066 4.066 9 C 0.223 3.777 10 O -0.513 6.513 11 N -0.210 5.210 12 C -0.466 4.466 13 H 0.096 0.904 14 C -0.212 4.212 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.199 1.199 18 H -0.194 1.194 19 H -0.196 1.196 20 N -0.359 5.359 21 C 0.302 3.698 22 O -0.453 6.453 23 C 0.010 3.990 24 H 0.118 0.882 25 C -0.176 4.176 26 C -0.158 4.158 27 C -0.194 4.194 28 C -0.025 4.025 29 O -0.312 6.312 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.161 0.839 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.253 0.747 45 H 0.122 0.878 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.105 0.895 49 H 0.113 0.887 50 H 0.081 0.919 51 H 0.081 0.919 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.380 -2.017 -19.420 29.700 hybrid contribution 0.949 -1.286 0.179 1.608 sum -21.431 -3.303 -19.241 28.990 Atomic orbital electron populations 1.22111 0.94186 1.03111 1.02054 1.21001 0.94573 0.96618 0.84036 0.92220 1.21782 0.94043 1.02392 0.96672 1.21497 0.95865 1.00536 0.97094 1.22067 0.85788 0.99392 0.99414 1.60051 1.06431 1.61374 1.04552 1.21523 0.90237 0.98645 0.96208 1.20970 0.90706 0.82802 0.83267 1.90491 1.72876 1.47363 1.40527 1.41929 1.06856 1.49043 1.23136 1.19632 0.83104 1.34450 1.09405 0.90433 1.26042 1.04938 0.95664 0.94591 1.69662 1.38360 1.35666 1.12276 0.84988 0.76766 0.78548 0.78032 1.19882 1.19374 1.19626 1.45896 1.66849 1.14675 1.08475 1.20675 0.77185 0.86769 0.85205 1.90699 1.50871 1.18162 1.85568 1.22047 1.00676 0.90041 0.86223 0.88181 1.22127 0.97993 0.97097 1.00406 1.21629 1.02951 0.97655 0.93535 1.22210 1.00298 0.97027 0.99870 1.22885 0.96574 0.97756 0.85326 1.88018 1.86717 1.34982 1.21493 0.90369 0.94525 0.90497 0.88910 0.88757 0.91978 0.93250 0.90535 0.93444 0.83895 0.87951 0.91299 0.76897 0.91254 0.74747 0.87839 0.91912 0.90235 0.89514 0.88739 0.91888 0.91855 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.48 71.98 0.68 -1.40 16 2 C 0.14 2.19 2.57 44.99 0.12 2.31 16 3 H 0.06 1.33 7.59 -2.38 -0.02 1.31 16 4 C -0.11 -1.27 4.75 30.60 0.15 -1.13 16 5 C -0.11 -2.00 5.36 30.60 0.16 -1.83 16 6 C 0.06 1.26 5.69 86.30 0.49 1.75 16 7 N -0.69 -21.40 6.12 -517.94 -3.17 -24.58 16 8 C 0.07 2.23 6.17 85.56 0.53 2.76 16 9 C 0.43 20.82 7.82 87.66 0.69 21.51 16 10 O -0.63 -35.23 15.78 -3.08 -0.05 -35.28 16 11 N -0.57 -29.45 5.29 -306.97 -1.62 -31.07 16 12 C -0.34 -19.21 9.68 84.04 0.81 -18.40 16 13 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 14 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 15 N -0.92 -49.36 13.05 21.66 0.28 -49.07 16 16 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 18 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 N -0.70 -10.23 4.49 -442.52 -1.99 -12.22 16 21 C 0.52 11.29 7.14 87.66 0.63 11.92 16 22 O -0.57 -18.81 16.17 15.95 0.26 -18.55 16 23 C 0.07 1.19 3.05 29.88 0.09 1.28 16 24 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 25 C -0.14 -1.44 5.37 30.68 0.16 -1.27 16 26 C -0.12 -0.92 6.03 30.72 0.19 -0.73 16 27 C -0.16 -1.51 6.14 30.68 0.19 -1.33 16 28 C 0.05 0.71 6.84 72.01 0.49 1.20 16 29 O -0.39 -8.86 9.94 -129.99 -1.29 -10.15 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 1.09 7.75 -2.38 -0.02 1.07 16 36 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 38 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.34 11.11 8.43 -89.69 -0.76 10.35 16 40 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 43 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 44 H 0.42 3.27 8.44 -92.70 -0.78 2.49 16 45 H 0.10 0.54 7.98 -2.39 -0.02 0.52 16 46 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 51 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 52 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -79.93 423.43 -1.06 -80.99 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -1.35 Total: 38.54 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 5.84 Total: 16.44 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -6.50 Total: -116.94 kcal Atomic # 8 Polarization: -62.90 SS G_CDS: -1.08 Total: -63.98 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -79.93 -1.06 -80.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506920213.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.040 kcal (2) G-P(sol) polarization free energy of solvation -79.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds