Wall clock time and date at job start Wed Apr 1 2020 01:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46769 * 2 1 4 4 C 1.53000 * 109.46846 * 119.99438 * 2 1 3 5 5 C 1.53001 * 109.46886 * 184.99838 * 4 2 1 6 6 C 1.53000 * 109.46886 * 180.02562 * 5 4 2 7 7 N 1.46901 * 109.46769 * 180.02562 * 6 5 4 8 8 C 1.46906 * 110.99793 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47183 * 180.02562 * 8 7 6 10 10 O 1.21298 * 119.99556 * 359.97438 * 9 8 7 11 11 N 1.34769 * 120.00297 * 180.02562 * 9 8 7 12 12 C 1.37095 * 120.00513 * 179.97438 * 11 9 8 13 13 H 1.08009 * 119.99415 * 0.02562 * 12 11 9 14 14 C 1.38946 * 120.00435 * 179.97438 * 12 11 9 15 15 N 1.31411 * 119.99912 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00181 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47140 * 90.00396 * 16 14 12 18 18 H 1.48500 * 109.47281 * 210.00370 * 16 14 12 19 19 H 1.48500 * 109.47204 * 330.00265 * 16 14 12 20 20 N 1.46498 * 109.47107 * 239.99680 * 2 1 3 21 21 C 1.34775 * 119.99962 * 85.00055 * 20 2 1 22 22 O 1.21284 * 120.00239 * 359.97438 * 21 20 2 23 23 C 1.50697 * 119.99756 * 179.97438 * 21 20 2 24 24 H 1.08996 * 109.48348 * 55.02768 * 23 21 20 25 25 C 1.53092 * 109.48104 * 294.99786 * 23 21 20 26 26 C 1.53181 * 109.16260 * 182.41125 * 25 23 21 27 27 C 1.53175 * 109.03675 * 56.97983 * 26 25 23 28 28 C 1.53087 * 109.16539 * 303.02107 * 27 26 25 29 29 O 1.42900 * 109.41726 * 57.60598 * 28 27 26 30 30 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47210 * 300.00061 * 1 2 3 32 32 H 1.09000 * 109.47381 * 60.00782 * 1 2 3 33 33 H 1.09001 * 109.46741 * 65.00233 * 4 2 1 34 34 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 35 35 H 1.09001 * 109.46652 * 60.00345 * 5 4 2 36 36 H 1.08992 * 109.47514 * 300.00434 * 5 4 2 37 37 H 1.09002 * 109.47398 * 300.00496 * 6 5 4 38 38 H 1.09001 * 109.47194 * 60.00677 * 6 5 4 39 39 H 1.00899 * 111.00283 * 303.95539 * 7 6 5 40 40 H 1.08995 * 109.47087 * 299.99901 * 8 7 6 41 41 H 1.09002 * 109.46903 * 59.99922 * 8 7 6 42 42 H 0.97000 * 119.99683 * 0.02562 * 11 9 8 43 43 H 0.97003 * 120.00238 * 179.97438 * 15 14 12 44 44 H 0.97003 * 120.00177 * 264.99939 * 20 2 1 45 45 H 1.08998 * 109.52591 * 302.31773 * 25 23 21 46 46 H 1.08996 * 109.52312 * 62.44641 * 25 23 21 47 47 H 1.09001 * 109.54595 * 176.85015 * 26 25 23 48 48 H 1.09001 * 109.54513 * 297.02336 * 26 25 23 49 49 H 1.09000 * 109.51825 * 62.92961 * 27 26 25 50 50 H 1.09006 * 109.52450 * 183.11046 * 27 26 25 51 51 H 1.09002 * 109.48134 * 177.59481 * 28 27 26 52 52 H 1.08999 * 109.47902 * 297.61533 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3349 2.5628 7 7 5.5388 -1.2307 2.6249 8 6 6.0652 -1.9144 3.8138 9 6 7.5664 -1.7860 3.8438 10 8 8.1413 -1.1844 2.9612 11 7 8.2703 -2.3403 4.8505 12 6 9.6360 -2.2239 4.8775 13 1 10.1478 -1.6875 4.0921 14 6 10.3616 -2.7949 5.9158 15 7 9.7388 -3.4471 6.8717 16 14 12.2224 -2.6357 5.9529 17 1 12.5994 -1.4069 6.6967 18 1 12.8074 -3.8220 6.6280 19 1 12.7399 -2.5517 4.5635 20 7 2.0184 -0.6907 -1.1961 21 6 2.1471 -0.0184 -2.3571 22 8 1.8582 1.1583 -2.4118 23 6 2.6500 -0.7287 -3.5873 24 1 2.0291 -1.6033 -3.7814 25 6 4.0990 -1.1703 -3.3655 26 6 4.6222 -1.8376 -4.6412 27 6 4.4857 -0.8571 -5.8100 28 6 3.0218 -0.4276 -5.9374 29 8 2.5894 0.1569 -4.7072 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 1.7516 -1.7714 1.2057 34 1 1.6053 -0.2616 2.1370 35 1 3.8531 0.4371 1.3574 36 1 3.9995 -1.0727 0.4261 37 1 3.6402 -0.8758 3.4507 38 1 3.7865 -2.3852 2.5187 39 1 5.9631 -1.5912 1.7834 40 1 5.6441 -1.4599 4.7106 41 1 5.7910 -2.9688 3.7778 42 1 7.8106 -2.8223 5.5557 43 1 10.2454 -3.8460 7.5964 44 1 2.2491 -1.6318 -1.1525 45 1 4.7130 -0.3007 -3.1312 46 1 4.1412 -1.8794 -2.5388 47 1 5.6708 -2.1043 -4.5094 48 1 4.0406 -2.7362 -4.8475 49 1 5.1076 0.0188 -5.6251 50 1 4.8044 -1.3430 -6.7323 51 1 2.9259 0.3030 -6.7406 52 1 2.4059 -1.2983 -6.1626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506920214.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:30 Heat of formation + Delta-G solvation = -169.090289 kcal Electronic energy + Delta-G solvation = -29466.516249 eV Core-core repulsion = 25270.795774 eV Total energy + Delta-G solvation = -4195.720475 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.39278 -40.16385 -39.68575 -37.94469 -36.64208 -35.85257 -34.71579 -33.70589 -33.26350 -32.43674 -31.03072 -28.64299 -26.86654 -26.54275 -24.96401 -24.77708 -22.60619 -22.13561 -21.57362 -21.21542 -21.02846 -19.90371 -18.54286 -17.90670 -17.69458 -17.14471 -16.76936 -16.71013 -16.50248 -16.06253 -15.89634 -15.55164 -15.51444 -15.39127 -15.17851 -15.07009 -14.79999 -14.29394 -14.09360 -13.99739 -13.69625 -13.65135 -13.50115 -13.25811 -13.07448 -12.97380 -12.76216 -12.54729 -12.42855 -12.38130 -12.20901 -12.14083 -12.08354 -11.96716 -11.69070 -11.56566 -11.50985 -11.41313 -10.73401 -10.49663 -10.35625 -10.10631 -10.02172 -9.28372 -8.47228 -5.96000 1.37751 1.41657 1.54263 1.54286 1.85933 2.04723 2.28980 2.93442 3.03607 3.20021 3.50566 3.59849 3.75631 3.81110 3.86937 3.99542 4.02105 4.07732 4.11458 4.18307 4.32199 4.37146 4.44626 4.46408 4.51486 4.58488 4.61812 4.66645 4.72096 4.75974 4.82423 4.84168 4.87929 4.93525 4.99952 5.07254 5.10019 5.15246 5.26250 5.30854 5.33646 5.40224 5.42876 5.56151 5.91136 6.10073 6.14208 6.44694 6.55378 6.59843 7.12143 7.22942 7.55774 8.11341 8.70068 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012411 B = 0.001846 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.564669 B =15163.528671 C =17038.571360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.060 0.940 4 C -0.111 4.111 5 C -0.111 4.111 6 C 0.062 3.938 7 N -0.691 5.691 8 C 0.066 3.934 9 C 0.435 3.565 10 O -0.625 6.625 11 N -0.573 5.573 12 C -0.334 4.334 13 H 0.078 0.922 14 C -0.013 4.013 15 N -0.919 5.919 16 Si 0.993 3.007 17 H -0.272 1.272 18 H -0.269 1.269 19 H -0.273 1.273 20 N -0.705 5.705 21 C 0.515 3.485 22 O -0.575 6.575 23 C 0.077 3.923 24 H 0.112 0.888 25 C -0.144 4.144 26 C -0.120 4.120 27 C -0.159 4.159 28 C 0.054 3.946 29 O -0.393 6.393 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.343 0.657 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.415 0.585 45 H 0.052 0.948 46 H 0.099 0.901 47 H 0.076 0.924 48 H 0.087 0.913 49 H 0.055 0.945 50 H 0.096 0.904 51 H 0.102 0.898 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.894 -3.519 -18.975 28.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.078 0.922 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.067 4.067 7 N -0.323 5.323 8 C -0.066 4.066 9 C 0.223 3.777 10 O -0.512 6.512 11 N -0.210 5.210 12 C -0.464 4.464 13 H 0.096 0.904 14 C -0.213 4.213 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.198 1.198 18 H -0.194 1.194 19 H -0.198 1.198 20 N -0.359 5.359 21 C 0.301 3.699 22 O -0.453 6.453 23 C 0.016 3.984 24 H 0.130 0.870 25 C -0.182 4.182 26 C -0.157 4.157 27 C -0.197 4.197 28 C -0.022 4.022 29 O -0.312 6.312 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.161 0.839 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.253 0.747 45 H 0.071 0.929 46 H 0.118 0.882 47 H 0.095 0.905 48 H 0.106 0.894 49 H 0.074 0.926 50 H 0.114 0.886 51 H 0.120 0.880 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.726 -1.576 -19.092 28.223 hybrid contribution 1.042 -1.268 0.251 1.661 sum -19.684 -2.844 -18.840 27.396 Atomic orbital electron populations 1.22116 0.94216 1.03104 1.02079 1.20997 0.94553 0.96624 0.84057 0.92218 1.21784 0.94095 1.02382 0.96661 1.21491 0.95816 1.00516 0.97117 1.22069 0.85807 0.99391 0.99409 1.60070 1.06389 1.61322 1.04552 1.21525 0.90239 0.98637 0.96234 1.20969 0.90702 0.82780 0.83263 1.90492 1.72876 1.47338 1.40502 1.41935 1.06871 1.48945 1.23260 1.19656 0.83092 1.34254 1.09404 0.90448 1.26042 1.04939 0.95708 0.94624 1.69667 1.38287 1.35687 1.12364 0.84929 0.76809 0.78206 0.78401 1.19757 1.19391 1.19785 1.45894 1.66755 1.14644 1.08611 1.20695 0.76981 0.86875 0.85341 1.90701 1.51005 1.18096 1.85501 1.22008 0.98069 0.92872 0.85482 0.87046 1.22149 0.93846 1.01501 1.00702 1.21612 1.02623 0.98470 0.93011 1.22226 0.97127 0.99947 1.00361 1.22868 0.94546 0.99610 0.85138 1.88020 1.86728 1.39412 1.17023 0.90535 0.90358 0.94485 0.88775 0.88945 0.93293 0.91873 0.90591 0.93435 0.83890 0.87980 0.91297 0.76905 0.91266 0.74738 0.92937 0.88211 0.90544 0.89403 0.92621 0.88593 0.87994 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.48 71.98 0.68 -1.43 16 2 C 0.14 2.19 2.57 44.99 0.12 2.31 16 3 H 0.06 1.33 7.58 -2.39 -0.02 1.31 16 4 C -0.11 -1.27 4.75 30.59 0.15 -1.13 16 5 C -0.11 -1.96 5.36 30.59 0.16 -1.80 16 6 C 0.06 1.25 5.69 86.30 0.49 1.74 16 7 N -0.69 -21.20 6.13 -517.91 -3.17 -24.38 16 8 C 0.07 2.21 6.17 85.56 0.53 2.74 16 9 C 0.44 20.76 7.82 87.66 0.69 21.45 16 10 O -0.63 -35.07 15.78 -3.08 -0.05 -35.12 16 11 N -0.57 -29.40 5.29 -306.99 -1.62 -31.02 16 12 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 13 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 14 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 15 N -0.92 -49.34 13.05 21.66 0.28 -49.06 16 16 Si 0.99 42.91 29.55 68.60 2.03 44.93 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 20 N -0.71 -10.19 4.49 -442.54 -1.99 -12.17 16 21 C 0.51 11.22 7.14 87.66 0.63 11.84 16 22 O -0.57 -18.76 16.17 15.95 0.26 -18.50 16 23 C 0.08 1.26 3.05 29.88 0.09 1.35 16 24 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 25 C -0.14 -2.01 5.37 30.69 0.16 -1.84 16 26 C -0.12 -1.26 6.03 30.71 0.19 -1.07 16 27 C -0.16 -1.85 6.14 30.68 0.19 -1.66 16 28 C 0.05 0.72 6.84 72.01 0.49 1.21 16 29 O -0.39 -8.62 9.94 -129.99 -1.29 -9.91 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.08 7.75 -2.39 -0.02 1.06 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.34 10.99 8.43 -89.69 -0.76 10.24 16 40 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 43 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 44 H 0.42 3.24 8.45 -92.71 -0.78 2.46 16 45 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.10 0.96 7.99 -2.39 -0.02 0.94 16 47 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.09 0.57 8.14 -2.39 -0.02 0.56 16 49 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 51 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 52 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -79.80 423.44 -1.06 -80.86 By element: Atomic # 1 Polarization: 40.50 SS G_CDS: -1.35 Total: 39.16 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 5.84 Total: 15.22 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -6.50 Total: -116.63 kcal Atomic # 8 Polarization: -62.45 SS G_CDS: -1.08 Total: -63.54 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -79.80 -1.06 -80.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506920214.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.228 kcal (2) G-P(sol) polarization free energy of solvation -79.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds