Wall clock time and date at job start Wed Apr 1 2020 01:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46988 * 2 1 4 4 C 1.50697 * 109.47718 * 239.99779 * 2 1 3 5 5 O 1.21280 * 119.99965 * 240.00614 * 4 2 1 6 6 N 1.34778 * 120.00107 * 59.99421 * 4 2 1 7 7 C 1.46501 * 119.99709 * 0.02562 * 6 4 2 8 8 C 1.46500 * 120.00112 * 180.02562 * 6 4 2 9 9 C 1.53002 * 109.47270 * 89.99858 * 8 6 4 10 10 H 1.09008 * 109.46695 * 60.00052 * 9 8 6 11 11 O 1.42901 * 109.47077 * 300.00602 * 9 8 6 12 12 C 1.52993 * 109.47169 * 179.97438 * 9 8 6 13 13 N 1.46905 * 109.47039 * 185.00340 * 12 9 8 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 9 15 15 C 1.50697 * 109.46943 * 180.02562 * 14 13 12 16 16 O 1.21292 * 120.00024 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99767 * 180.02562 * 15 14 13 18 18 C 1.37102 * 120.00095 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99386 * 359.97438 * 18 17 15 20 20 C 1.38941 * 120.00393 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99786 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47100 * 90.00207 * 22 20 18 24 24 H 1.48501 * 109.47251 * 210.00227 * 22 20 18 25 25 H 1.48503 * 109.46881 * 330.00341 * 22 20 18 26 26 C 1.53001 * 109.47132 * 119.99253 * 2 1 3 27 27 C 1.53783 * 113.61536 * 279.14298 * 26 2 1 28 28 C 1.53958 * 87.01991 * 220.04676 * 27 26 2 29 29 C 1.53777 * 113.61595 * 181.53233 * 26 2 1 30 30 H 1.09002 * 109.46988 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47621 * 300.00386 * 1 2 3 32 32 H 1.09005 * 109.46840 * 60.00815 * 1 2 3 33 33 H 1.09002 * 109.47298 * 269.99766 * 7 6 4 34 34 H 1.08999 * 109.47121 * 30.00348 * 7 6 4 35 35 H 1.09007 * 109.46558 * 149.99831 * 7 6 4 36 36 H 1.08998 * 109.46665 * 330.00207 * 8 6 4 37 37 H 1.08994 * 109.47087 * 210.00643 * 8 6 4 38 38 H 0.96697 * 113.99359 * 299.99075 * 11 9 8 39 39 H 1.09001 * 109.47393 * 65.00621 * 12 9 8 40 40 H 1.08998 * 109.47408 * 305.00267 * 12 9 8 41 41 H 1.00901 * 110.99869 * 56.04956 * 13 12 9 42 42 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 43 43 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 44 44 H 0.96997 * 120.00713 * 359.97438 * 17 15 14 45 45 H 0.97001 * 119.99428 * 179.97438 * 21 20 18 46 46 H 1.09000 * 112.84534 * 50.33517 * 26 2 1 47 47 H 1.09000 * 113.61133 * 334.56382 * 27 26 2 48 48 H 1.08996 * 113.61388 * 105.46651 * 27 26 2 49 49 H 1.09000 * 113.53469 * 270.81235 * 28 27 26 50 50 H 1.08993 * 113.74393 * 139.93921 * 28 27 26 51 51 H 1.09000 * 113.61919 * 254.53239 * 29 26 2 52 52 H 1.09009 * 113.61238 * 25.43336 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 0.8649 0.9412 -2.5890 8 6 2.1948 -0.9411 -3.6506 9 6 1.1867 -2.0141 -4.0668 10 1 0.2266 -1.5459 -4.2839 11 8 1.0278 -2.9561 -3.0039 12 6 1.6961 -2.7353 -5.3162 13 7 0.6755 -3.6820 -5.7855 14 6 1.1312 -4.3949 -6.9864 15 6 0.0602 -5.3543 -7.4376 16 8 -0.9800 -5.4365 -6.8194 17 7 0.2588 -6.1217 -8.5276 18 6 -0.7152 -6.9950 -8.9379 19 1 -1.6415 -7.0681 -8.3873 20 6 -0.5107 -7.7858 -10.0619 21 7 0.6166 -7.6970 -10.7314 22 14 -1.8376 -8.9761 -10.6204 23 1 -2.7474 -8.2914 -11.5737 24 1 -1.2068 -10.1424 -11.2891 25 1 -2.6135 -9.4407 -9.4425 26 6 2.0400 -0.7211 1.2493 27 6 2.0342 0.1561 2.5124 28 6 3.3855 -0.4896 2.8696 29 6 3.5732 -0.7441 1.3646 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.1832 0.6436 -2.6222 34 1 1.0287 1.6001 -1.7363 35 1 1.1228 1.4664 -3.5088 36 1 3.1549 -1.4092 -3.4334 37 1 2.3162 -0.2225 -4.4612 38 1 1.8440 -3.4119 -2.7571 39 1 2.6109 -3.2770 -5.0756 40 1 1.9015 -2.0050 -6.0989 41 1 -0.2021 -3.2135 -5.9539 42 1 1.3329 -3.6763 -7.7808 43 1 2.0419 -4.9480 -6.7569 44 1 1.0909 -6.0563 -9.0219 45 1 0.7594 -8.2494 -11.5159 46 1 1.5765 -1.6971 1.3935 47 1 2.1023 1.2236 2.3029 48 1 1.2340 -0.0891 3.2106 49 1 3.2898 -1.4021 3.4581 50 1 4.1092 0.2099 3.2877 51 1 4.0137 -1.7149 1.1375 52 1 4.0629 0.0769 0.8406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507487065.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:56 Heat of formation + Delta-G solvation = -127.164746 kcal Electronic energy + Delta-G solvation = -30021.224387 eV Core-core repulsion = 25827.321940 eV Total energy + Delta-G solvation = -4193.902447 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.45420 -40.21018 -39.51072 -38.40008 -36.48209 -36.15042 -35.58060 -33.90615 -33.28670 -31.33263 -28.87845 -27.75855 -26.89002 -26.48124 -26.17550 -24.94502 -23.27408 -22.52391 -21.10232 -20.47448 -19.96707 -19.91533 -18.23280 -17.99231 -17.48593 -17.16747 -16.86643 -16.60266 -16.27035 -16.13429 -16.00437 -15.88752 -15.55836 -15.23582 -15.00791 -14.66016 -14.41175 -14.31927 -13.94374 -13.66136 -13.48257 -13.38623 -13.24660 -13.21679 -13.12503 -12.98759 -12.83498 -12.69054 -12.57088 -12.43766 -12.32984 -12.14781 -12.13453 -12.00770 -11.52639 -11.40781 -11.25809 -11.17201 -10.92963 -10.44725 -10.34205 -10.03423 -9.48949 -9.28470 -8.48334 -5.97384 1.36878 1.40623 1.53748 1.75056 2.03038 2.09703 2.28430 2.89154 3.18624 3.41269 3.49912 3.66373 3.73749 3.76711 3.84587 3.96691 4.06980 4.14890 4.17970 4.23905 4.30913 4.33928 4.41805 4.45377 4.47655 4.51266 4.54049 4.65899 4.68959 4.73742 4.83523 4.86340 4.87700 4.91680 5.01118 5.07814 5.11108 5.11789 5.22690 5.33628 5.39130 5.43686 5.56307 5.64410 5.86763 6.08720 6.36425 6.47628 6.58465 6.86206 7.10820 7.32621 7.53958 8.09830 8.69024 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026331 B = 0.001662 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.113972 B =16844.344971 C =17000.115359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 H 0.117 0.883 4 C 0.515 3.485 5 O -0.569 6.569 6 N -0.612 5.612 7 C 0.067 3.933 8 C 0.089 3.911 9 C 0.101 3.899 10 H 0.092 0.908 11 O -0.563 6.563 12 C 0.034 3.966 13 N -0.680 5.680 14 C 0.067 3.933 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.572 5.572 18 C -0.337 4.337 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.994 3.006 23 H -0.269 1.269 24 H -0.269 1.269 25 H -0.275 1.275 26 C -0.094 4.094 27 C -0.123 4.123 28 C -0.144 4.144 29 C -0.128 4.128 30 H 0.035 0.965 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.375 0.625 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.343 0.657 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.069 0.931 47 H 0.097 0.903 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.044 0.956 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.250 25.358 20.349 33.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 H 0.135 0.865 4 C 0.304 3.696 5 O -0.448 6.448 6 N -0.345 5.345 7 C -0.075 4.075 8 C -0.035 4.035 9 C 0.040 3.960 10 H 0.109 0.891 11 O -0.368 6.368 12 C -0.096 4.096 13 N -0.312 5.312 14 C -0.066 4.066 15 C 0.223 3.777 16 O -0.511 6.511 17 N -0.210 5.210 18 C -0.466 4.466 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.560 5.560 22 Si 0.818 3.182 23 H -0.194 1.194 24 H -0.194 1.194 25 H -0.200 1.200 26 C -0.113 4.113 27 C -0.160 4.160 28 C -0.181 4.181 29 C -0.165 4.165 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.132 0.868 38 H 0.223 0.777 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.161 0.839 42 H 0.088 0.912 43 H 0.119 0.881 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.116 0.884 48 H 0.091 0.909 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.063 0.937 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.581 24.405 21.032 32.883 hybrid contribution 0.319 -0.651 -1.539 1.701 sum 6.901 23.754 19.494 31.494 Atomic orbital electron populations 1.21986 0.92155 1.02101 1.04512 1.21339 0.98055 1.00692 0.91255 0.86492 1.21134 0.79112 0.84091 0.85256 1.90631 1.39645 1.27635 1.86874 1.47789 1.51866 1.29593 1.05203 1.22247 0.94386 0.86089 1.04778 1.22131 0.97163 0.95920 0.88273 1.22299 0.99463 0.88597 0.85622 0.89060 1.86557 1.38389 1.57756 1.54130 1.22687 0.95152 0.94466 0.97298 1.59922 1.06095 1.32312 1.32907 1.21532 0.96319 0.96128 0.92596 1.20926 0.89713 0.84988 0.82060 1.90498 1.31004 1.71949 1.57680 1.41924 1.18161 1.35611 1.25264 1.19674 0.98608 1.17567 1.10772 0.90475 1.26048 0.99778 0.99609 0.95770 1.69674 1.25339 1.41525 1.19469 0.84915 0.77592 0.77525 0.78205 1.19406 1.19412 1.20010 1.22317 0.96312 0.98778 0.93848 1.22972 0.97428 0.99661 0.95925 1.22879 0.98277 1.01109 0.95871 1.22779 0.96051 1.00991 0.96710 0.94532 0.89781 0.89934 0.92106 0.88888 0.89173 0.90594 0.86768 0.77743 0.90371 0.92007 0.83884 0.91174 0.88145 0.76919 0.91243 0.91291 0.88410 0.90872 0.90712 0.90492 0.93660 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.81 71.98 0.63 -1.18 16 2 C -0.09 -1.27 1.65 -11.54 -0.02 -1.29 16 3 H 0.12 1.01 7.24 -2.39 -0.02 0.99 16 4 C 0.51 10.29 6.40 87.66 0.56 10.85 16 5 O -0.57 -15.74 13.32 5.31 0.07 -15.67 16 6 N -0.61 -9.45 2.83 -846.75 -2.39 -11.84 16 7 C 0.07 0.52 8.85 127.77 1.13 1.65 16 8 C 0.09 1.41 5.19 86.38 0.45 1.86 16 9 C 0.10 2.18 3.41 30.59 0.10 2.28 16 10 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 11 O -0.56 -16.64 12.10 -140.64 -1.70 -18.34 16 12 C 0.03 0.76 5.32 86.30 0.46 1.22 16 13 N -0.68 -22.45 6.07 -517.93 -3.15 -25.60 16 14 C 0.07 2.35 6.17 85.56 0.53 2.87 16 15 C 0.44 21.52 7.82 87.66 0.69 22.20 16 16 O -0.62 -36.26 15.78 -3.07 -0.05 -36.31 16 17 N -0.57 -30.16 5.29 -306.99 -1.62 -31.78 16 18 C -0.34 -19.62 9.68 84.04 0.81 -18.80 16 19 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 20 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 21 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 22 Si 0.99 43.67 29.55 68.60 2.03 45.70 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 C -0.09 -1.51 2.68 -10.27 -0.03 -1.54 16 27 C -0.12 -1.32 7.63 31.18 0.24 -1.08 16 28 C -0.14 -1.86 8.09 31.18 0.25 -1.61 16 29 C -0.13 -2.22 6.29 31.12 0.20 -2.02 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.76 4.53 -2.38 -0.01 0.75 16 33 H 0.06 0.51 6.95 -2.39 -0.02 0.50 16 34 H 0.09 0.37 6.01 -2.39 -0.01 0.35 16 35 H 0.09 0.37 7.89 -2.38 -0.02 0.35 16 36 H 0.08 1.42 7.42 -2.39 -0.02 1.40 16 37 H 0.11 1.10 7.89 -2.39 -0.02 1.08 16 38 H 0.37 10.73 8.45 -74.06 -0.63 10.11 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.34 11.90 8.43 -89.69 -0.76 11.14 16 42 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 44 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 45 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 46 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.10 0.71 7.99 -2.39 -0.02 0.69 16 48 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.04 1.02 8.00 -2.39 -0.02 1.00 16 52 H 0.08 1.24 8.10 -2.38 -0.02 1.22 16 Total: -1.00 -77.88 414.62 -1.23 -79.11 By element: Atomic # 1 Polarization: 50.56 SS G_CDS: -1.17 Total: 49.39 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 6.47 Total: 15.22 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -6.88 Total: -119.09 kcal Atomic # 8 Polarization: -68.64 SS G_CDS: -1.68 Total: -70.32 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -77.88 -1.23 -79.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507487065.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.052 kcal (2) G-P(sol) polarization free energy of solvation -77.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds