Wall clock time and date at job start Wed Apr 1 2020 01:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 5 5 O 1.21283 * 119.99803 * 119.99700 * 4 2 1 6 6 N 1.34777 * 119.99675 * 300.27576 * 4 2 1 7 7 C 1.46496 * 120.00345 * 359.72090 * 6 4 2 8 8 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 9 9 C 1.53009 * 109.47238 * 90.00006 * 8 6 4 10 10 H 1.08997 * 109.46588 * 304.99304 * 9 8 6 11 11 O 1.42896 * 109.47169 * 64.99772 * 9 8 6 12 12 C 1.52998 * 109.47162 * 184.99790 * 9 8 6 13 13 N 1.46891 * 109.47107 * 179.97438 * 12 9 8 14 14 C 1.46907 * 111.00111 * 180.02562 * 13 12 9 15 15 C 1.50705 * 109.47171 * 180.02562 * 14 13 12 16 16 O 1.21294 * 119.99969 * 359.97438 * 15 14 13 17 17 N 1.34769 * 119.99687 * 180.02562 * 15 14 13 18 18 C 1.37100 * 119.99891 * 180.02562 * 17 15 14 19 19 H 1.08000 * 119.99842 * 359.97438 * 18 17 15 20 20 C 1.38954 * 120.00240 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99663 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99979 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47079 * 89.99741 * 22 20 18 24 24 H 1.48498 * 109.47214 * 209.99668 * 22 20 18 25 25 H 1.48504 * 109.47332 * 330.00061 * 22 20 18 26 26 C 1.53004 * 109.46876 * 240.00486 * 2 1 3 27 27 C 1.53775 * 113.61161 * 157.49868 * 26 2 1 28 28 C 1.53782 * 87.08088 * 220.01613 * 27 26 2 29 29 C 1.53773 * 113.61602 * 60.00146 * 26 2 1 30 30 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 31 31 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 32 32 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47115 * 90.00316 * 7 6 4 34 34 H 1.08995 * 109.47364 * 210.00706 * 7 6 4 35 35 H 1.09002 * 109.47090 * 330.00257 * 7 6 4 36 36 H 1.09000 * 109.46889 * 209.99487 * 8 6 4 37 37 H 1.09001 * 109.47460 * 330.00097 * 8 6 4 38 38 H 0.96704 * 114.00190 * 59.99884 * 11 9 8 39 39 H 1.08997 * 109.47290 * 299.99991 * 12 9 8 40 40 H 1.09003 * 109.47275 * 59.99501 * 12 9 8 41 41 H 1.00903 * 111.00465 * 303.95046 * 13 12 9 42 42 H 1.09004 * 109.46870 * 299.99983 * 14 13 12 43 43 H 1.09000 * 109.47047 * 60.00307 * 14 13 12 44 44 H 0.96999 * 120.00985 * 359.97438 * 17 15 14 45 45 H 0.96999 * 119.99623 * 180.02562 * 21 20 18 46 46 H 1.08996 * 112.84669 * 288.80242 * 26 2 1 47 47 H 1.08997 * 113.62179 * 334.56550 * 27 26 2 48 48 H 1.09005 * 113.61447 * 105.47028 * 27 26 2 49 49 H 1.09000 * 113.61482 * 270.88820 * 28 27 26 50 50 H 1.09003 * 113.69379 * 139.99453 * 28 27 26 51 51 H 1.09006 * 113.61685 * 254.52699 * 29 26 2 52 52 H 1.09001 * 113.61732 * 25.42593 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7021 -0.2534 2.4545 7 6 0.8599 0.9377 2.5891 8 6 2.1855 -0.9476 3.6505 9 6 3.5320 -0.3570 4.0740 10 1 4.2272 -0.4001 3.2357 11 8 3.3510 1.0030 4.4734 12 6 4.0961 -1.1621 5.2463 13 7 5.3890 -0.5955 5.6524 14 6 5.9622 -1.3453 6.7781 15 6 7.2848 -0.7358 7.1662 16 8 7.7084 0.2281 6.5640 17 7 7.9972 -1.2624 8.1818 18 6 9.2001 -0.7076 8.5352 19 1 9.5769 0.1511 7.9996 20 6 9.9350 -1.2509 9.5820 21 7 9.4767 -2.2961 10.2334 22 14 11.5742 -0.4954 10.0630 23 1 11.3533 0.5534 11.0909 24 1 12.4624 -1.5499 10.6148 25 1 12.2102 0.1111 8.8659 26 6 2.0399 -0.7212 -1.2494 27 6 3.4725 -0.3276 -1.6461 28 6 2.9921 -0.3571 -3.1066 29 6 1.5811 -0.0721 -2.5657 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.1883 0.6403 2.6175 34 1 1.1144 1.4604 3.5110 35 1 1.0271 1.5988 1.7387 36 1 1.4644 -0.8242 4.4586 37 1 2.3070 -2.0083 3.4308 38 1 2.7430 1.1171 5.2167 39 1 3.4008 -1.1191 6.0846 40 1 4.2340 -2.1996 4.9416 41 1 6.0309 -0.5650 4.8744 42 1 5.2801 -1.3036 7.6273 43 1 6.1129 -2.3839 6.4837 44 1 7.6587 -2.0335 8.6632 45 1 9.9895 -2.6750 10.9644 46 1 1.8758 -1.7981 -1.2130 47 1 3.7639 0.6649 -1.3023 48 1 4.2151 -1.0915 -1.4152 49 1 3.0895 -1.3347 -3.5787 50 1 3.3969 0.4500 -3.7173 51 1 0.7965 -0.6298 -3.0773 52 1 1.3551 0.9902 -2.4733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507487066.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:00 Heat of formation + Delta-G solvation = -101.548516 kcal Electronic energy + Delta-G solvation = -29872.978271 eV Core-core repulsion = 25680.186628 eV Total energy + Delta-G solvation = -4192.791644 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.79602 -38.97140 -38.30586 -37.58893 -35.62625 -34.70871 -33.74583 -33.32032 -31.21158 -30.43564 -27.75097 -27.00727 -26.25250 -25.54062 -25.08678 -23.62880 -22.48495 -21.73558 -19.83285 -19.38355 -19.21253 -17.86753 -17.38667 -16.97834 -16.41724 -16.13157 -15.93876 -15.53349 -15.37360 -14.99154 -14.81419 -14.47944 -14.39385 -14.12445 -13.98923 -13.68088 -13.31582 -13.21209 -13.03589 -12.87498 -12.78115 -12.58347 -12.44679 -12.24075 -11.98623 -11.83320 -11.72763 -11.57608 -11.51130 -11.46215 -11.11032 -11.01334 -10.82688 -10.61495 -10.43155 -10.37908 -10.36792 -10.19000 -9.80691 -9.48087 -8.81284 -8.40519 -8.01041 -7.92540 -6.39074 -3.79669 2.40894 2.67458 3.20121 3.28352 3.34702 3.94080 4.01149 4.06413 4.24783 4.27766 4.30338 4.43729 4.53594 4.56769 4.69009 4.79398 4.81293 4.89704 4.97388 4.98764 5.04990 5.12876 5.15496 5.26731 5.28460 5.32023 5.38471 5.40034 5.42940 5.44491 5.47325 5.59383 5.60537 5.62132 5.73656 5.81950 5.85173 5.93496 5.98528 5.99344 6.19433 6.23244 6.29333 7.07803 7.21954 7.57968 7.60288 7.74136 7.94588 8.09452 8.64566 9.20918 9.57404 10.09326 10.78789 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019981 B = 0.001734 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.997491 B =16147.737996 C =16903.060121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.100 4.100 3 H 0.097 0.903 4 C 0.518 3.482 5 O -0.536 6.536 6 N -0.609 5.609 7 C 0.078 3.922 8 C 0.084 3.916 9 C 0.098 3.902 10 H 0.099 0.901 11 O -0.541 6.541 12 C 0.029 3.971 13 N -0.658 5.658 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.581 6.581 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.931 3.069 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.089 4.089 27 C -0.134 4.134 28 C -0.144 4.144 29 C -0.135 4.135 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.368 0.632 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.350 0.650 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.096 0.904 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.066 0.934 51 H 0.066 0.934 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.160 2.440 -20.157 31.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.121 4.121 3 H 0.115 0.885 4 C 0.306 3.694 5 O -0.412 6.412 6 N -0.342 5.342 7 C -0.064 4.064 8 C -0.039 4.039 9 C 0.037 3.963 10 H 0.117 0.883 11 O -0.345 6.345 12 C -0.102 4.102 13 N -0.290 5.290 14 C -0.083 4.083 15 C 0.227 3.773 16 O -0.465 6.465 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.108 4.108 27 C -0.172 4.172 28 C -0.181 4.181 29 C -0.173 4.173 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.214 0.786 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.170 0.830 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.115 0.885 47 H 0.096 0.904 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.085 0.915 51 H 0.085 0.915 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.268 3.043 -20.552 31.194 hybrid contribution 0.487 -1.145 0.837 1.499 sum -22.781 1.898 -19.715 30.187 Atomic orbital electron populations 1.22019 0.92991 1.02940 1.03268 1.21332 0.97461 1.00508 0.92784 0.88539 1.20730 0.79821 0.84480 0.84379 1.90700 1.37631 1.26455 1.86404 1.47688 1.51528 1.29359 1.05578 1.21987 0.93625 0.87040 1.03796 1.22178 0.96151 0.98354 0.87249 1.22285 0.95222 0.82465 0.96314 0.88331 1.86668 1.69232 1.24628 1.53961 1.22597 0.93557 0.96305 0.97715 1.59988 1.04256 1.53795 1.11007 1.21694 0.96336 0.95037 0.95187 1.19805 0.86616 0.86923 0.83989 1.90535 1.71567 1.28883 1.55474 1.41859 1.19208 1.29516 1.29593 1.19714 0.95380 1.13177 1.14540 0.87928 1.25262 1.00023 0.96298 0.96433 1.69614 1.39559 1.22584 1.22666 0.85848 0.81117 0.78369 0.78894 1.20405 1.20960 1.19432 1.22371 0.96478 1.00284 0.91641 1.22920 0.96719 1.01864 0.95687 1.22804 0.96675 1.01888 0.96729 1.22957 0.97113 1.00850 0.96331 0.91086 0.91369 0.92254 0.92536 0.90352 0.90861 0.90061 0.88986 0.78559 0.90780 0.94583 0.83013 0.89704 0.93984 0.77489 0.91920 0.88531 0.90365 0.91098 0.90268 0.91508 0.91537 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 8.63 37.16 0.32 -0.50 16 2 C -0.10 -0.75 1.67 -91.77 -0.15 -0.90 16 3 H 0.10 0.65 7.21 -51.93 -0.37 0.28 16 4 C 0.52 5.44 7.07 -10.98 -0.08 5.36 16 5 O -0.54 -7.64 15.42 5.55 0.09 -7.56 16 6 N -0.61 -5.27 2.84 -181.57 -0.52 -5.78 16 7 C 0.08 0.43 8.62 59.84 0.52 0.95 16 8 C 0.08 0.75 5.07 -4.04 -0.02 0.73 16 9 C 0.10 1.11 3.42 -26.73 -0.09 1.02 16 10 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 11 O -0.54 -6.39 12.03 -35.23 -0.42 -6.81 16 12 C 0.03 0.36 5.35 -3.83 -0.02 0.34 16 13 N -0.66 -11.16 5.99 -115.06 -0.69 -11.85 16 14 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 15 C 0.44 10.79 7.82 -10.99 -0.09 10.71 16 16 O -0.58 -16.41 15.78 5.55 0.09 -16.33 16 17 N -0.56 -14.69 5.29 -10.96 -0.06 -14.75 16 18 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 19 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 22 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C -0.09 -0.72 2.54 -89.81 -0.23 -0.95 16 27 C -0.13 -1.18 7.60 -25.92 -0.20 -1.38 16 28 C -0.14 -1.00 8.08 -25.92 -0.21 -1.21 16 29 C -0.14 -0.83 6.68 -25.93 -0.17 -1.01 16 30 H 0.07 0.29 4.51 -51.93 -0.23 0.06 16 31 H 0.07 0.28 7.45 -51.93 -0.39 -0.10 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.22 6.94 -51.93 -0.36 -0.14 16 34 H 0.08 0.42 7.11 -51.93 -0.37 0.05 16 35 H 0.07 0.35 6.02 -51.93 -0.31 0.04 16 36 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 37 H 0.09 0.93 7.42 -51.93 -0.39 0.55 16 38 H 0.37 3.06 9.04 45.56 0.41 3.47 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.35 6.43 8.43 -39.29 -0.33 6.10 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.10 0.93 7.86 -51.93 -0.41 0.52 16 47 H 0.08 0.67 7.96 -51.93 -0.41 0.26 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 52 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 LS Contribution 416.05 15.07 6.27 6.27 Total: -1.00 -35.25 416.05 -8.30 -43.54 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -8.06 Total: 15.19 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -0.69 Total: 5.85 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.54 Total: -56.58 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.25 Total: -30.69 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.25 -8.30 -43.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507487066.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.004 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds