Wall clock time and date at job start Wed Apr 1 2020 01:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 5 5 O 1.21283 * 119.99803 * 119.99700 * 4 2 1 6 6 N 1.34777 * 119.99675 * 300.27576 * 4 2 1 7 7 C 1.46496 * 120.00345 * 359.72090 * 6 4 2 8 8 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 9 9 C 1.53009 * 109.47238 * 90.00006 * 8 6 4 10 10 H 1.08997 * 109.46588 * 304.99304 * 9 8 6 11 11 O 1.42896 * 109.47169 * 64.99772 * 9 8 6 12 12 C 1.52998 * 109.47162 * 184.99790 * 9 8 6 13 13 N 1.46891 * 109.47107 * 179.97438 * 12 9 8 14 14 C 1.46907 * 111.00111 * 180.02562 * 13 12 9 15 15 C 1.50705 * 109.47171 * 180.02562 * 14 13 12 16 16 O 1.21294 * 119.99969 * 359.97438 * 15 14 13 17 17 N 1.34769 * 119.99687 * 180.02562 * 15 14 13 18 18 C 1.37100 * 119.99891 * 180.02562 * 17 15 14 19 19 H 1.08000 * 119.99842 * 359.97438 * 18 17 15 20 20 C 1.38954 * 120.00240 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99663 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99979 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47079 * 89.99741 * 22 20 18 24 24 H 1.48498 * 109.47214 * 209.99668 * 22 20 18 25 25 H 1.48504 * 109.47332 * 330.00061 * 22 20 18 26 26 C 1.53004 * 109.46876 * 240.00486 * 2 1 3 27 27 C 1.53775 * 113.61161 * 157.49868 * 26 2 1 28 28 C 1.53782 * 87.08088 * 220.01613 * 27 26 2 29 29 C 1.53773 * 113.61602 * 60.00146 * 26 2 1 30 30 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 31 31 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 32 32 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47115 * 90.00316 * 7 6 4 34 34 H 1.08995 * 109.47364 * 210.00706 * 7 6 4 35 35 H 1.09002 * 109.47090 * 330.00257 * 7 6 4 36 36 H 1.09000 * 109.46889 * 209.99487 * 8 6 4 37 37 H 1.09001 * 109.47460 * 330.00097 * 8 6 4 38 38 H 0.96704 * 114.00190 * 59.99884 * 11 9 8 39 39 H 1.08997 * 109.47290 * 299.99991 * 12 9 8 40 40 H 1.09003 * 109.47275 * 59.99501 * 12 9 8 41 41 H 1.00903 * 111.00465 * 303.95046 * 13 12 9 42 42 H 1.09004 * 109.46870 * 299.99983 * 14 13 12 43 43 H 1.09000 * 109.47047 * 60.00307 * 14 13 12 44 44 H 0.96999 * 120.00985 * 359.97438 * 17 15 14 45 45 H 0.96999 * 119.99623 * 180.02562 * 21 20 18 46 46 H 1.08996 * 112.84669 * 288.80242 * 26 2 1 47 47 H 1.08997 * 113.62179 * 334.56550 * 27 26 2 48 48 H 1.09005 * 113.61447 * 105.47028 * 27 26 2 49 49 H 1.09000 * 113.61482 * 270.88820 * 28 27 26 50 50 H 1.09003 * 113.69379 * 139.99453 * 28 27 26 51 51 H 1.09006 * 113.61685 * 254.52699 * 29 26 2 52 52 H 1.09001 * 113.61732 * 25.42593 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7021 -0.2534 2.4545 7 6 0.8599 0.9377 2.5891 8 6 2.1855 -0.9476 3.6505 9 6 3.5320 -0.3570 4.0740 10 1 4.2272 -0.4001 3.2357 11 8 3.3510 1.0030 4.4734 12 6 4.0961 -1.1621 5.2463 13 7 5.3890 -0.5955 5.6524 14 6 5.9622 -1.3453 6.7781 15 6 7.2848 -0.7358 7.1662 16 8 7.7084 0.2281 6.5640 17 7 7.9972 -1.2624 8.1818 18 6 9.2001 -0.7076 8.5352 19 1 9.5769 0.1511 7.9996 20 6 9.9350 -1.2509 9.5820 21 7 9.4767 -2.2961 10.2334 22 14 11.5742 -0.4954 10.0630 23 1 11.3533 0.5534 11.0909 24 1 12.4624 -1.5499 10.6148 25 1 12.2102 0.1111 8.8659 26 6 2.0399 -0.7212 -1.2494 27 6 3.4725 -0.3276 -1.6461 28 6 2.9921 -0.3571 -3.1066 29 6 1.5811 -0.0721 -2.5657 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.1883 0.6403 2.6175 34 1 1.1144 1.4604 3.5110 35 1 1.0271 1.5988 1.7387 36 1 1.4644 -0.8242 4.4586 37 1 2.3070 -2.0083 3.4308 38 1 2.7430 1.1171 5.2167 39 1 3.4008 -1.1191 6.0846 40 1 4.2340 -2.1996 4.9416 41 1 6.0309 -0.5650 4.8744 42 1 5.2801 -1.3036 7.6273 43 1 6.1129 -2.3839 6.4837 44 1 7.6587 -2.0335 8.6632 45 1 9.9895 -2.6750 10.9644 46 1 1.8758 -1.7981 -1.2130 47 1 3.7639 0.6649 -1.3023 48 1 4.2151 -1.0915 -1.4152 49 1 3.0895 -1.3347 -3.5787 50 1 3.3969 0.4500 -3.7173 51 1 0.7965 -0.6298 -3.0773 52 1 1.3551 0.9902 -2.4733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507487066.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:00 Heat of formation + Delta-G solvation = -129.609557 kcal Electronic energy + Delta-G solvation = -29874.195089 eV Core-core repulsion = 25680.186628 eV Total energy + Delta-G solvation = -4194.008462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.51146 -40.22314 -39.59587 -38.60623 -36.56348 -36.10696 -35.56934 -33.92308 -33.29231 -31.40825 -28.89703 -27.75309 -26.99988 -26.55032 -26.08976 -24.97946 -23.30379 -22.63271 -21.10974 -20.45854 -20.06483 -19.93434 -18.26488 -17.95901 -17.42579 -17.25889 -17.03528 -16.67451 -16.30687 -16.22738 -16.02141 -15.89555 -15.51546 -15.20754 -15.03583 -14.68070 -14.54930 -14.36308 -13.93167 -13.70261 -13.49454 -13.47456 -13.37852 -13.23239 -13.13377 -12.99955 -12.85846 -12.73473 -12.59748 -12.44031 -12.24424 -12.14992 -12.13455 -12.01080 -11.53062 -11.40990 -11.31082 -11.22007 -11.02222 -10.58459 -10.37486 -10.03924 -9.52545 -9.34453 -8.48640 -5.97651 1.36781 1.40403 1.53469 1.63634 2.01434 2.02584 2.28095 2.86641 3.18204 3.40813 3.43405 3.63633 3.69744 3.70402 3.80892 3.91906 3.99522 4.08101 4.12825 4.27270 4.28700 4.29917 4.40003 4.44167 4.47650 4.51414 4.53639 4.64726 4.70414 4.77040 4.83285 4.84698 4.87192 4.89860 5.01685 5.03056 5.07046 5.09139 5.13899 5.35231 5.38860 5.38955 5.52716 5.61637 5.84876 6.06980 6.26330 6.40009 6.58008 6.96023 7.10426 7.19601 7.53429 8.09327 8.68733 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019981 B = 0.001734 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.997491 B =16147.737996 C =16903.060121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 H 0.108 0.892 4 C 0.506 3.494 5 O -0.586 6.586 6 N -0.607 5.607 7 C 0.071 3.929 8 C 0.090 3.910 9 C 0.110 3.890 10 H 0.062 0.938 11 O -0.557 6.557 12 C 0.032 3.968 13 N -0.673 5.673 14 C 0.065 3.935 15 C 0.435 3.565 16 O -0.625 6.625 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.994 3.006 23 H -0.269 1.269 24 H -0.269 1.269 25 H -0.275 1.275 26 C -0.093 4.093 27 C -0.146 4.146 28 C -0.141 4.141 29 C -0.119 4.119 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.385 0.615 39 H 0.101 0.899 40 H 0.042 0.958 41 H 0.337 0.663 42 H 0.110 0.890 43 H 0.063 0.937 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.042 0.958 49 H 0.077 0.923 50 H 0.076 0.924 51 H 0.077 0.923 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.459 3.202 -19.821 33.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 H 0.126 0.874 4 C 0.296 3.704 5 O -0.466 6.466 6 N -0.338 5.338 7 C -0.071 4.071 8 C -0.034 4.034 9 C 0.049 3.951 10 H 0.080 0.920 11 O -0.364 6.364 12 C -0.098 4.098 13 N -0.305 5.305 14 C -0.067 4.067 15 C 0.223 3.777 16 O -0.511 6.511 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.560 5.560 22 Si 0.818 3.182 23 H -0.195 1.195 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.112 4.112 27 C -0.183 4.183 28 C -0.179 4.179 29 C -0.157 4.157 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.234 0.766 39 H 0.119 0.881 40 H 0.060 0.940 41 H 0.155 0.845 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.061 0.939 49 H 0.095 0.905 50 H 0.095 0.905 51 H 0.096 0.904 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -25.632 3.805 -20.183 32.845 hybrid contribution 1.191 -1.371 0.745 1.963 sum -24.441 2.433 -19.438 31.322 Atomic orbital electron populations 1.22014 0.90815 1.02817 1.04940 1.21357 0.99120 1.00261 0.90834 0.87431 1.21374 0.79173 0.84091 0.85766 1.90674 1.39923 1.28778 1.87191 1.47825 1.51138 1.29952 1.04929 1.22250 0.94296 0.85968 1.04565 1.22104 0.95593 0.97319 0.88386 1.22044 0.95824 0.82494 0.94763 0.91976 1.86633 1.70056 1.24696 1.54970 1.22709 0.91619 0.96458 0.98972 1.60028 1.05511 1.54631 1.10319 1.21567 0.93146 0.95420 0.96592 1.20910 0.88148 0.86074 0.82564 1.90500 1.73121 1.30910 1.56612 1.41920 1.18958 1.29769 1.30283 1.19671 0.97268 1.13730 1.15915 0.90479 1.26058 1.03046 0.96483 0.95670 1.69669 1.40709 1.22913 1.22698 0.84911 0.76948 0.77999 0.78361 1.19479 1.19380 1.19943 1.22331 0.96119 0.99372 0.93363 1.22975 0.96722 1.00961 0.97657 1.22810 0.97360 1.02228 0.95477 1.22910 0.96650 1.01721 0.94386 0.89524 0.89586 0.93245 0.90132 0.89748 0.89981 0.86541 0.90449 0.76612 0.88119 0.93977 0.84535 0.87199 0.91929 0.76902 0.91232 0.90760 0.90278 0.93940 0.90463 0.90534 0.90434 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.63 71.98 0.62 -0.60 16 2 C -0.09 -1.34 1.67 -11.54 -0.02 -1.36 16 3 H 0.11 1.28 7.21 -2.39 -0.02 1.26 16 4 C 0.51 10.72 7.07 87.66 0.62 11.34 16 5 O -0.59 -17.79 15.42 -3.04 -0.05 -17.84 16 6 N -0.61 -9.77 2.84 -846.76 -2.40 -12.17 16 7 C 0.07 0.58 8.62 127.77 1.10 1.68 16 8 C 0.09 1.48 5.07 86.38 0.44 1.92 16 9 C 0.11 2.43 3.42 30.60 0.10 2.54 16 10 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 11 O -0.56 -12.45 12.03 -148.98 -1.79 -14.24 16 12 C 0.03 0.74 5.35 86.30 0.46 1.20 16 13 N -0.67 -22.57 5.99 -517.93 -3.10 -25.68 16 14 C 0.07 2.31 6.17 85.56 0.53 2.84 16 15 C 0.44 21.62 7.82 87.66 0.69 22.31 16 16 O -0.62 -36.46 15.78 -3.07 -0.05 -36.51 16 17 N -0.57 -30.23 5.29 -306.98 -1.62 -31.86 16 18 C -0.34 -19.64 9.68 84.04 0.81 -18.82 16 19 H 0.08 4.82 7.16 -2.91 -0.02 4.79 16 20 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 21 N -0.92 -50.23 13.05 21.66 0.28 -49.95 16 22 Si 0.99 43.76 29.55 68.60 2.03 45.79 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 26 C -0.09 -1.53 2.54 -10.27 -0.03 -1.55 16 27 C -0.15 -2.72 7.60 31.12 0.24 -2.48 16 28 C -0.14 -1.93 8.08 31.12 0.25 -1.68 16 29 C -0.12 -1.28 6.68 31.12 0.21 -1.07 16 30 H 0.09 0.43 4.51 -2.38 -0.01 0.42 16 31 H 0.09 0.43 7.45 -2.38 -0.02 0.41 16 32 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.08 0.32 6.94 -2.39 -0.02 0.31 16 34 H 0.08 0.63 7.11 -2.39 -0.02 0.62 16 35 H 0.08 0.55 6.02 -2.39 -0.01 0.54 16 36 H 0.12 1.10 8.07 -2.39 -0.02 1.08 16 37 H 0.08 1.54 7.42 -2.39 -0.02 1.52 16 38 H 0.38 5.45 9.04 -74.05 -0.67 4.78 16 39 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.34 12.75 8.43 -89.69 -0.76 11.99 16 42 H 0.11 3.39 8.14 -2.38 -0.02 3.37 16 43 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.40 19.76 7.90 -92.71 -0.73 19.03 16 45 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 46 H 0.07 1.55 7.86 -2.39 -0.02 1.53 16 47 H 0.08 1.42 7.96 -2.39 -0.02 1.40 16 48 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 49 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 52 H 0.10 0.75 8.10 -2.39 -0.02 0.73 16 Total: -1.00 -79.91 416.05 -1.43 -81.34 By element: Atomic # 1 Polarization: 46.30 SS G_CDS: -1.21 Total: 45.09 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 6.49 Total: 16.04 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -6.85 Total: -119.66 kcal Atomic # 8 Polarization: -66.71 SS G_CDS: -1.89 Total: -68.59 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -79.91 -1.43 -81.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507487066.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.271 kcal (2) G-P(sol) polarization free energy of solvation -79.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds