Wall clock time and date at job start Wed Apr 1 2020 01:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42901 * 113.99717 * 2 1 4 4 H 1.09006 * 109.47223 * 329.99559 * 3 2 1 5 5 C 1.52994 * 109.47513 * 89.99660 * 3 2 1 6 6 C 1.50705 * 109.47106 * 210.00138 * 3 2 1 7 7 O 1.21278 * 119.99744 * 354.99681 * 6 3 2 8 8 N 1.34768 * 120.00177 * 174.99814 * 6 3 2 9 9 C 1.46500 * 120.00056 * 179.97438 * 8 6 3 10 10 H 1.08998 * 109.46845 * 35.00845 * 9 8 6 11 11 C 1.52997 * 109.47473 * 275.00296 * 9 8 6 12 12 C 1.53006 * 109.47249 * 154.99998 * 9 8 6 13 13 C 1.53120 * 109.52401 * 299.87558 * 12 9 8 14 14 C 1.53038 * 109.27453 * 182.49916 * 13 12 9 15 15 N 1.46840 * 109.57419 * 59.08924 * 14 13 12 16 16 C 1.46902 * 111.00039 * 174.19030 * 15 14 13 17 17 C 1.50696 * 109.47062 * 294.20473 * 16 15 14 18 18 O 1.21289 * 120.00163 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99772 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99808 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99973 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99959 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00190 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00016 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47196 * 89.99869 * 24 22 20 26 26 H 1.48499 * 109.47356 * 209.99552 * 24 22 20 27 27 H 1.48508 * 109.47283 * 329.99764 * 24 22 20 28 28 C 1.46850 * 111.19681 * 298.28746 * 15 14 13 29 29 C 1.53029 * 109.52255 * 61.74243 * 28 15 14 30 30 H 1.09000 * 109.46961 * 60.00250 * 1 2 3 31 31 H 1.08994 * 109.46982 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46897 * 299.99979 * 1 2 3 33 33 H 1.08996 * 109.47474 * 300.00251 * 5 3 2 34 34 H 1.09006 * 109.46958 * 59.99737 * 5 3 2 35 35 H 1.08997 * 109.47241 * 179.97438 * 5 3 2 36 36 H 0.97001 * 120.00396 * 359.97438 * 8 6 3 37 37 H 1.09002 * 109.47153 * 59.99757 * 11 9 8 38 38 H 1.09001 * 109.46832 * 299.99948 * 11 9 8 39 39 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 40 40 H 1.09004 * 109.51986 * 60.00128 * 12 9 8 41 41 H 1.09000 * 109.50719 * 302.38293 * 13 12 9 42 42 H 1.09003 * 109.50116 * 62.49845 * 13 12 9 43 43 H 1.08999 * 109.41190 * 299.06807 * 14 13 12 44 44 H 1.09001 * 109.45494 * 179.12724 * 14 13 12 45 45 H 1.08997 * 109.47322 * 54.21146 * 16 15 14 46 46 H 1.09008 * 109.46837 * 174.21004 * 16 15 14 47 47 H 0.97000 * 120.00217 * 0.02562 * 19 17 16 48 48 H 0.96992 * 120.00367 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.46089 * 301.72464 * 28 15 14 50 50 H 1.09006 * 109.45416 * 181.75362 * 28 15 14 51 51 H 1.09010 * 109.50481 * 180.88053 * 29 28 15 52 52 H 1.09006 * 109.53910 * 60.78590 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2176 1.7715 1.4424 6 6 3.3387 1.2640 -0.7105 7 8 3.7897 0.2046 -1.0914 8 7 4.0254 2.4040 -0.9225 9 6 5.3170 2.3636 -1.6126 10 1 5.2963 1.5869 -2.3771 11 6 6.4252 2.0565 -0.6034 12 6 5.5868 3.7188 -2.2697 13 6 4.4801 4.0259 -3.2824 14 6 4.7883 5.3522 -3.9808 15 7 6.0874 5.2607 -4.6594 16 6 6.3523 6.4674 -5.4541 17 6 5.3576 6.5539 -6.5829 18 8 4.5109 5.6952 -6.7122 19 7 5.4082 7.5862 -7.4480 20 6 4.5028 7.6651 -8.4746 21 1 3.7495 6.9000 -8.5902 22 6 4.5553 8.7290 -9.3668 23 7 5.4723 9.6598 -9.2264 24 14 3.3214 8.8371 -10.7651 25 1 2.1279 9.5971 -10.3144 26 1 3.9429 9.5316 -11.9212 27 1 2.9124 7.4684 -11.1712 28 6 7.1713 5.0140 -3.6999 29 6 6.9351 3.6768 -2.9942 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.2569 1.8016 1.9563 34 1 2.8829 1.0776 1.9563 35 1 2.6613 2.7671 1.4424 36 1 3.6645 3.2514 -0.6182 37 1 6.2330 1.0911 -0.1353 38 1 6.4459 2.8333 0.1610 39 1 7.3861 2.0260 -1.1170 40 1 5.6077 4.4962 -1.5060 41 1 4.4330 3.2278 -4.0233 42 1 3.5236 4.0997 -2.7649 43 1 4.8204 6.1522 -3.2412 44 1 4.0102 5.5661 -4.7136 45 1 6.2590 7.3484 -4.8192 46 1 7.3619 6.4191 -5.8625 47 1 6.0851 8.2732 -7.3443 48 1 5.5087 10.4026 -9.8490 49 1 7.1923 5.8156 -2.9616 50 1 8.1240 4.9822 -4.2287 51 1 7.7316 3.5013 -2.2709 52 1 6.9281 2.8725 -3.7299 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508057216.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:39 Heat of formation + Delta-G solvation = -122.436453 kcal Electronic energy + Delta-G solvation = -30453.832099 eV Core-core repulsion = 26260.134686 eV Total energy + Delta-G solvation = -4193.697413 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.46848 -39.32529 -38.18132 -37.55694 -35.81111 -33.93922 -33.25504 -31.84600 -31.24161 -30.87401 -29.75993 -27.23696 -27.17194 -25.16116 -24.49405 -23.33609 -22.80898 -21.19091 -20.64448 -19.64942 -19.17434 -17.85340 -17.71429 -17.31152 -16.13559 -15.93335 -15.78284 -15.59278 -15.07359 -14.90392 -14.67326 -14.59810 -14.11825 -13.97842 -13.77734 -13.65874 -13.60767 -13.36621 -13.15347 -13.02932 -12.87612 -12.61049 -12.33275 -12.19699 -12.00076 -11.78211 -11.67137 -11.54986 -11.46007 -11.28586 -11.04933 -11.01504 -10.63930 -10.42237 -10.39429 -10.31405 -10.23270 -10.20324 -9.69481 -9.46362 -9.25513 -8.40775 -7.96749 -7.80833 -6.41380 -3.82038 2.41670 2.59756 3.17543 3.26299 3.32387 3.62467 3.91222 4.01148 4.24865 4.31530 4.46494 4.51999 4.60199 4.73566 4.76646 4.90102 5.00663 5.06494 5.07994 5.17682 5.23041 5.23479 5.27434 5.27877 5.32686 5.38518 5.50702 5.53596 5.62682 5.64463 5.67817 5.77589 5.80173 5.87295 5.88597 5.95266 6.03772 6.13333 6.19338 6.29481 6.30029 6.48015 6.53476 6.65070 7.27666 7.34174 7.47550 7.55619 8.02935 8.07242 8.62625 9.18776 9.55366 10.07357 10.76418 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.002100 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.050631 B =13331.105134 C =14764.706507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.068 3.932 4 H 0.087 0.913 5 C -0.169 4.169 6 C 0.515 3.485 7 O -0.518 6.518 8 N -0.721 5.721 9 C 0.148 3.852 10 H 0.091 0.909 11 C -0.164 4.164 12 C -0.095 4.095 13 C -0.105 4.105 14 C 0.053 3.947 15 N -0.515 5.515 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.056 3.944 29 C -0.107 4.107 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.398 0.602 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.019 0.981 44 H 0.103 0.897 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.028 0.972 50 H 0.074 0.926 51 H 0.069 0.931 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.823 -9.992 22.615 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.278 6.278 3 C 0.006 3.994 4 H 0.105 0.895 5 C -0.227 4.227 6 C 0.300 3.700 7 O -0.393 6.393 8 N -0.375 5.375 9 C 0.044 3.956 10 H 0.109 0.891 11 C -0.222 4.222 12 C -0.114 4.114 13 C -0.143 4.143 14 C -0.074 4.074 15 N -0.240 5.240 16 C -0.085 4.085 17 C 0.229 3.771 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.072 4.072 29 C -0.145 4.145 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.233 0.767 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.037 0.963 44 H 0.121 0.879 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.046 0.954 50 H 0.093 0.907 51 H 0.087 0.913 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.942 -11.769 21.798 24.849 hybrid contribution -0.481 2.060 0.054 2.116 sum -2.423 -9.709 21.852 24.035 Atomic orbital electron populations 1.22898 0.80512 1.03331 1.00121 1.88053 1.19741 1.25074 1.94929 1.21955 0.93713 0.87027 0.96704 0.89504 1.22219 1.03436 1.01958 0.95092 1.20339 0.85985 0.84244 0.79467 1.90728 1.69251 1.29711 1.49579 1.46007 1.21970 1.09164 1.60312 1.21045 0.81740 0.98475 0.94315 0.89121 1.22221 0.98721 1.01866 0.99386 1.21525 0.96820 0.95545 0.97510 1.21577 0.96607 0.98735 0.97367 1.22237 0.92958 0.95224 0.96994 1.61493 1.01817 1.36865 1.23792 1.21832 1.00023 0.91234 0.95396 1.19765 0.87833 0.84196 0.85276 1.90483 1.39584 1.40757 1.75244 1.41881 1.30664 1.22050 1.25622 1.19689 1.10427 1.08492 1.04088 0.87947 1.25257 0.97967 0.95562 0.99233 1.69609 1.34029 1.12292 1.38466 0.85866 0.79851 0.78583 0.80042 1.20471 1.20942 1.19411 1.22088 0.95071 0.96213 0.93868 1.21616 0.95568 0.98320 0.98986 0.93634 0.89098 0.93854 0.91203 0.91091 0.90925 0.76738 0.92283 0.92600 0.91109 0.91150 0.90727 0.92145 0.96305 0.87882 0.93655 0.89406 0.77521 0.91912 0.95390 0.90743 0.91262 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.29 16 2 O -0.36 -3.92 9.89 -55.09 -0.54 -4.47 16 3 C 0.07 0.58 3.13 -27.88 -0.09 0.49 16 4 H 0.09 0.56 7.79 -51.93 -0.40 0.16 16 5 C -0.17 -1.02 9.48 37.15 0.35 -0.66 16 6 C 0.52 5.83 7.14 -10.99 -0.08 5.75 16 7 O -0.52 -8.31 16.17 -14.30 -0.23 -8.54 16 8 N -0.72 -6.34 4.39 -53.81 -0.24 -6.58 16 9 C 0.15 1.45 2.16 -67.93 -0.15 1.31 16 10 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 11 C -0.16 -1.41 9.14 37.16 0.34 -1.07 16 12 C -0.09 -0.93 1.89 -90.50 -0.17 -1.10 16 13 C -0.10 -1.32 5.19 -26.65 -0.14 -1.46 16 14 C 0.05 0.83 5.10 -3.84 -0.02 0.81 16 15 N -0.51 -8.35 4.40 -236.12 -1.04 -9.39 16 16 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 17 C 0.44 10.36 7.46 -10.99 -0.08 10.28 16 18 O -0.58 -15.33 13.90 5.55 0.08 -15.25 16 19 N -0.57 -14.23 5.29 -10.96 -0.06 -14.29 16 20 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 24 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 28 C 0.06 0.68 5.46 -3.84 -0.02 0.66 16 29 C -0.11 -1.10 4.95 -26.66 -0.13 -1.24 16 30 H 0.05 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.22 7.87 -51.93 -0.41 -0.19 16 33 H 0.07 0.33 7.87 -51.93 -0.41 -0.08 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.30 7.92 -51.93 -0.41 -0.11 16 36 H 0.40 2.46 8.19 -40.82 -0.33 2.12 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.56 6.50 -51.93 -0.34 0.22 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.06 0.66 7.54 -51.93 -0.39 0.27 16 43 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.10 2.01 5.78 -51.93 -0.30 1.71 16 45 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 46 H 0.09 1.41 7.99 -51.92 -0.41 1.00 16 47 H 0.39 9.44 7.90 -40.82 -0.32 9.11 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 0.86 8.02 -51.93 -0.42 0.44 16 51 H 0.07 0.57 6.58 -51.92 -0.34 0.23 16 52 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 412.97 15.07 6.22 6.22 Total: -1.00 -34.51 412.97 -8.51 -43.02 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -9.04 Total: 9.09 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 0.64 Total: 7.93 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.61 Total: -54.00 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.70 Total: -28.26 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.51 -8.51 -43.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508057216.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.414 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds