Wall clock time and date at job start Wed Apr 1 2020 01:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42901 * 113.99717 * 2 1 4 4 H 1.09006 * 109.47223 * 329.99559 * 3 2 1 5 5 C 1.52994 * 109.47513 * 89.99660 * 3 2 1 6 6 C 1.50705 * 109.47106 * 210.00138 * 3 2 1 7 7 O 1.21278 * 119.99744 * 354.99681 * 6 3 2 8 8 N 1.34768 * 120.00177 * 174.99814 * 6 3 2 9 9 C 1.46500 * 120.00056 * 179.97438 * 8 6 3 10 10 H 1.08998 * 109.46845 * 35.00845 * 9 8 6 11 11 C 1.52997 * 109.47473 * 275.00296 * 9 8 6 12 12 C 1.53006 * 109.47249 * 154.99998 * 9 8 6 13 13 C 1.53120 * 109.52401 * 299.87558 * 12 9 8 14 14 C 1.53038 * 109.27453 * 182.49916 * 13 12 9 15 15 N 1.46840 * 109.57419 * 59.08924 * 14 13 12 16 16 C 1.46902 * 111.00039 * 174.19030 * 15 14 13 17 17 C 1.50696 * 109.47062 * 294.20473 * 16 15 14 18 18 O 1.21289 * 120.00163 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99772 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99808 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99973 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99959 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00190 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00016 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47196 * 89.99869 * 24 22 20 26 26 H 1.48499 * 109.47356 * 209.99552 * 24 22 20 27 27 H 1.48508 * 109.47283 * 329.99764 * 24 22 20 28 28 C 1.46850 * 111.19681 * 298.28746 * 15 14 13 29 29 C 1.53029 * 109.52255 * 61.74243 * 28 15 14 30 30 H 1.09000 * 109.46961 * 60.00250 * 1 2 3 31 31 H 1.08994 * 109.46982 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46897 * 299.99979 * 1 2 3 33 33 H 1.08996 * 109.47474 * 300.00251 * 5 3 2 34 34 H 1.09006 * 109.46958 * 59.99737 * 5 3 2 35 35 H 1.08997 * 109.47241 * 179.97438 * 5 3 2 36 36 H 0.97001 * 120.00396 * 359.97438 * 8 6 3 37 37 H 1.09002 * 109.47153 * 59.99757 * 11 9 8 38 38 H 1.09001 * 109.46832 * 299.99948 * 11 9 8 39 39 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 40 40 H 1.09004 * 109.51986 * 60.00128 * 12 9 8 41 41 H 1.09000 * 109.50719 * 302.38293 * 13 12 9 42 42 H 1.09003 * 109.50116 * 62.49845 * 13 12 9 43 43 H 1.08999 * 109.41190 * 299.06807 * 14 13 12 44 44 H 1.09001 * 109.45494 * 179.12724 * 14 13 12 45 45 H 1.08997 * 109.47322 * 54.21146 * 16 15 14 46 46 H 1.09008 * 109.46837 * 174.21004 * 16 15 14 47 47 H 0.97000 * 120.00217 * 0.02562 * 19 17 16 48 48 H 0.96992 * 120.00367 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.46089 * 301.72464 * 28 15 14 50 50 H 1.09006 * 109.45416 * 181.75362 * 28 15 14 51 51 H 1.09010 * 109.50481 * 180.88053 * 29 28 15 52 52 H 1.09006 * 109.53910 * 60.78590 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2176 1.7715 1.4424 6 6 3.3387 1.2640 -0.7105 7 8 3.7897 0.2046 -1.0914 8 7 4.0254 2.4040 -0.9225 9 6 5.3170 2.3636 -1.6126 10 1 5.2963 1.5869 -2.3771 11 6 6.4252 2.0565 -0.6034 12 6 5.5868 3.7188 -2.2697 13 6 4.4801 4.0259 -3.2824 14 6 4.7883 5.3522 -3.9808 15 7 6.0874 5.2607 -4.6594 16 6 6.3523 6.4674 -5.4541 17 6 5.3576 6.5539 -6.5829 18 8 4.5109 5.6952 -6.7122 19 7 5.4082 7.5862 -7.4480 20 6 4.5028 7.6651 -8.4746 21 1 3.7495 6.9000 -8.5902 22 6 4.5553 8.7290 -9.3668 23 7 5.4723 9.6598 -9.2264 24 14 3.3214 8.8371 -10.7651 25 1 2.1279 9.5971 -10.3144 26 1 3.9429 9.5316 -11.9212 27 1 2.9124 7.4684 -11.1712 28 6 7.1713 5.0140 -3.6999 29 6 6.9351 3.6768 -2.9942 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.2569 1.8016 1.9563 34 1 2.8829 1.0776 1.9563 35 1 2.6613 2.7671 1.4424 36 1 3.6645 3.2514 -0.6182 37 1 6.2330 1.0911 -0.1353 38 1 6.4459 2.8333 0.1610 39 1 7.3861 2.0260 -1.1170 40 1 5.6077 4.4962 -1.5060 41 1 4.4330 3.2278 -4.0233 42 1 3.5236 4.0997 -2.7649 43 1 4.8204 6.1522 -3.2412 44 1 4.0102 5.5661 -4.7136 45 1 6.2590 7.3484 -4.8192 46 1 7.3619 6.4191 -5.8625 47 1 6.0851 8.2732 -7.3443 48 1 5.5087 10.4026 -9.8490 49 1 7.1923 5.8156 -2.9616 50 1 8.1240 4.9822 -4.2287 51 1 7.7316 3.5013 -2.2709 52 1 6.9281 2.8725 -3.7299 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508057216.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:38 Heat of formation + Delta-G solvation = -148.384231 kcal Electronic energy + Delta-G solvation = -30454.957279 eV Core-core repulsion = 26260.134686 eV Total energy + Delta-G solvation = -4194.822593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.34211 -40.59217 -39.49634 -38.54818 -36.91225 -35.87769 -34.25047 -33.27702 -32.56867 -31.90685 -30.62072 -28.63075 -27.70913 -26.57443 -25.57134 -24.40587 -23.83759 -22.12450 -21.48583 -21.00458 -20.58631 -19.85840 -18.48910 -18.02890 -17.71669 -16.84258 -16.79952 -16.50336 -16.49894 -16.24025 -15.86897 -15.63660 -15.45147 -15.30911 -15.13659 -14.77173 -14.39987 -14.30507 -14.21952 -13.86609 -13.70556 -13.50570 -13.41116 -13.33437 -13.17715 -12.97412 -12.79083 -12.71625 -12.56875 -12.41218 -12.31164 -12.13969 -12.12117 -12.06195 -11.53673 -11.53073 -11.36104 -11.23032 -11.03179 -10.48945 -10.25134 -10.06813 -9.97631 -9.10015 -8.45788 -5.94057 1.37411 1.41104 1.53748 1.57088 1.88509 2.07492 2.28838 2.83003 3.01195 3.21135 3.41686 3.58173 3.69257 3.82517 3.91118 3.94501 4.05195 4.24815 4.30709 4.35403 4.37589 4.43747 4.46773 4.51992 4.52662 4.56491 4.59381 4.65980 4.67989 4.79710 4.81725 4.82721 4.84289 4.91439 4.99282 5.07087 5.09334 5.18601 5.19479 5.27153 5.39942 5.41615 5.45424 5.56619 5.93954 6.05654 6.15926 6.35899 6.56324 6.62578 7.14569 7.24120 7.58585 8.15010 8.71618 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.002100 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.050631 B =13331.105134 C =14764.706507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.398 6.398 3 C 0.066 3.934 4 H 0.110 0.890 5 C -0.162 4.162 6 C 0.509 3.491 7 O -0.576 6.576 8 N -0.707 5.707 9 C 0.152 3.848 10 H 0.056 0.944 11 C -0.156 4.156 12 C -0.081 4.081 13 C -0.098 4.098 14 C 0.057 3.943 15 N -0.540 5.540 16 C 0.059 3.941 17 C 0.440 3.560 18 O -0.615 6.615 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.991 3.009 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.275 1.275 28 C 0.055 3.945 29 C -0.105 4.105 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.415 0.585 37 H 0.038 0.962 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.039 0.961 44 H 0.055 0.945 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.049 0.951 50 H 0.082 0.918 51 H 0.101 0.899 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.378 -8.418 24.770 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.005 3.995 4 H 0.128 0.872 5 C -0.220 4.220 6 C 0.295 3.705 7 O -0.455 6.455 8 N -0.360 5.360 9 C 0.047 3.953 10 H 0.074 0.926 11 C -0.214 4.214 12 C -0.099 4.099 13 C -0.136 4.136 14 C -0.071 4.071 15 N -0.266 5.266 16 C -0.072 4.072 17 C 0.228 3.772 18 O -0.501 6.501 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.095 0.905 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.200 1.200 28 C -0.072 4.072 29 C -0.143 4.143 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.252 0.748 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.126 0.874 47 H 0.230 0.770 48 H 0.086 0.914 49 H 0.067 0.933 50 H 0.101 0.899 51 H 0.119 0.881 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.485 -10.144 23.985 26.085 hybrid contribution -0.631 1.536 -0.612 1.770 sum -2.116 -8.609 23.374 24.998 Atomic orbital electron populations 1.23073 0.78777 1.04104 1.01377 1.88005 1.21802 1.26696 1.95211 1.22133 0.92285 0.86841 0.98246 0.87217 1.22207 1.04243 1.02558 0.92974 1.20993 0.86895 0.83820 0.78769 1.90699 1.70803 1.31830 1.52126 1.45896 1.21467 1.09424 1.59229 1.20913 0.82773 0.97448 0.94118 0.92562 1.22155 0.98390 1.01525 0.99361 1.21421 0.95370 0.96070 0.97085 1.21496 0.98778 0.96056 0.97255 1.22095 0.91573 0.97241 0.96171 1.61452 1.03280 1.36217 1.25604 1.21699 0.98674 0.93019 0.93822 1.20862 0.87941 0.82681 0.85726 1.90467 1.41367 1.41911 1.76311 1.41950 1.30656 1.22920 1.25831 1.19618 1.11365 1.08880 1.06100 0.90526 1.26012 0.99554 0.94801 1.00994 1.69666 1.34789 1.12496 1.39216 0.84953 0.77903 0.78274 0.77361 1.19555 1.19553 1.20001 1.22211 0.93778 0.97568 0.93604 1.21639 0.96787 0.96727 0.99121 0.93231 0.88760 0.91624 0.89519 0.92658 0.88607 0.74755 0.94258 0.90328 0.90097 0.88267 0.94171 0.90507 0.94298 0.92675 0.91489 0.87423 0.77044 0.91351 0.93257 0.89913 0.88085 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.82 113.37 1.23 1.52 16 2 O -0.40 -8.63 9.89 -129.99 -1.29 -9.91 16 3 C 0.07 1.06 3.13 29.85 0.09 1.15 16 4 H 0.11 1.20 7.79 -2.38 -0.02 1.18 16 5 C -0.16 -1.58 9.48 71.98 0.68 -0.90 16 6 C 0.51 11.45 7.14 87.66 0.63 12.08 16 7 O -0.58 -19.36 16.17 15.97 0.26 -19.10 16 8 N -0.71 -11.42 4.39 -442.54 -1.94 -13.37 16 9 C 0.15 2.81 2.16 44.99 0.10 2.90 16 10 H 0.06 1.46 7.58 -2.39 -0.02 1.44 16 11 C -0.16 -2.36 9.14 71.98 0.66 -1.70 16 12 C -0.08 -1.39 1.89 -10.71 -0.02 -1.41 16 13 C -0.10 -2.41 5.19 30.65 0.16 -2.25 16 14 C 0.06 1.74 5.10 86.33 0.44 2.18 16 15 N -0.54 -16.95 4.40 -900.94 -3.96 -20.91 16 16 C 0.06 2.02 5.45 85.56 0.47 2.48 16 17 C 0.44 21.01 7.46 87.66 0.65 21.66 16 18 O -0.61 -34.12 13.90 -3.06 -0.04 -34.17 16 19 N -0.58 -29.62 5.29 -306.98 -1.62 -31.25 16 20 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 23 N -0.92 -49.69 13.05 21.66 0.28 -49.40 16 24 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 27 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 28 C 0.06 1.19 5.46 86.32 0.47 1.66 16 29 C -0.10 -1.91 4.95 30.64 0.15 -1.75 16 30 H 0.05 0.57 8.08 -2.39 -0.02 0.56 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 0.53 7.87 -2.39 -0.02 0.51 16 33 H 0.09 0.57 7.87 -2.39 -0.02 0.55 16 34 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.10 0.46 7.92 -2.39 -0.02 0.44 16 36 H 0.42 3.88 8.19 -92.71 -0.76 3.12 16 37 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 1.05 6.50 -2.38 -0.02 1.04 16 40 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.59 7.54 -2.39 -0.02 1.57 16 43 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.05 2.23 5.78 -2.39 -0.01 2.22 16 45 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 46 H 0.11 3.25 7.99 -2.38 -0.02 3.24 16 47 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 48 H 0.28 14.00 8.31 -92.71 -0.77 13.22 16 49 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.08 1.65 8.02 -2.38 -0.02 1.63 16 51 H 0.10 1.25 6.58 -2.38 -0.02 1.24 16 52 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -80.14 412.97 0.13 -80.01 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: -0.57 Total: 33.56 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 6.99 Total: 19.33 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -7.25 Total: -114.93 kcal Atomic # 8 Polarization: -62.11 SS G_CDS: -1.07 Total: -63.18 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -80.14 0.13 -80.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508057216.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.372 kcal (2) G-P(sol) polarization free energy of solvation -80.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds