Wall clock time and date at job start Wed Apr 1 2020 01:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 114.00064 * 2 1 4 4 C 1.52999 * 109.47043 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46858 * 179.97438 * 4 3 2 6 6 O 1.21288 * 120.00476 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99885 * 179.97438 * 5 4 3 8 8 C 1.46925 * 120.62843 * 5.40815 * 7 5 4 9 9 C 1.53192 * 108.77642 * 126.41121 * 8 7 5 10 10 C 1.53037 * 109.31544 * 54.62782 * 9 8 7 11 11 H 1.09004 * 109.46025 * 58.65630 * 10 9 8 12 12 C 1.53000 * 109.46095 * 178.63004 * 10 9 8 13 13 C 1.53042 * 109.54272 * 298.63769 * 10 9 8 14 14 C 1.46928 * 120.62994 * 185.42041 * 7 5 4 15 15 H 1.09003 * 109.58490 * 113.65924 * 14 7 5 16 16 C 1.52999 * 109.58877 * 353.38013 * 14 7 5 17 17 N 1.46896 * 109.47302 * 179.97438 * 16 14 7 18 18 C 1.46900 * 111.00288 * 174.99224 * 17 16 14 19 19 C 1.50695 * 109.47176 * 180.02562 * 18 17 16 20 20 O 1.21291 * 120.00140 * 0.02562 * 19 18 17 21 21 N 1.34781 * 119.99798 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99808 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00377 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99893 * 180.02562 * 22 21 19 25 25 N 1.31409 * 119.99977 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99934 * 179.97438 * 24 22 21 27 27 H 1.48510 * 109.46963 * 90.00280 * 26 24 22 28 28 H 1.48501 * 109.47469 * 209.99862 * 26 24 22 29 29 H 1.48495 * 109.47466 * 330.00306 * 26 24 22 30 30 H 1.08998 * 109.46450 * 60.00663 * 1 2 3 31 31 H 1.08997 * 109.46846 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47121 * 300.00486 * 1 2 3 33 33 H 1.08997 * 109.47473 * 59.98971 * 3 2 1 34 34 H 1.09007 * 109.46895 * 299.99750 * 3 2 1 35 35 H 1.08993 * 109.47494 * 59.99525 * 4 3 2 36 36 H 1.09001 * 109.46765 * 299.99356 * 4 3 2 37 37 H 1.09003 * 109.58158 * 246.19574 * 8 7 5 38 38 H 1.08995 * 109.58764 * 6.62053 * 8 7 5 39 39 H 1.08997 * 109.49768 * 174.58732 * 9 8 7 40 40 H 1.09004 * 109.49359 * 294.65087 * 9 8 7 41 41 H 1.08994 * 109.47202 * 60.00083 * 12 10 9 42 42 H 1.09008 * 109.47159 * 180.02562 * 12 10 9 43 43 H 1.09002 * 109.47232 * 300.00086 * 12 10 9 44 44 H 1.08992 * 109.49567 * 301.41598 * 13 10 9 45 45 H 1.08996 * 109.49975 * 181.30873 * 13 10 9 46 46 H 1.09009 * 109.47208 * 60.00312 * 16 14 7 47 47 H 1.08996 * 109.47336 * 300.00651 * 16 14 7 48 48 H 1.00904 * 111.00054 * 298.94744 * 17 16 14 49 49 H 1.09003 * 109.46990 * 300.00429 * 18 17 16 50 50 H 1.09004 * 109.46936 * 60.00034 * 18 17 16 51 51 H 0.96994 * 120.00210 * 0.02562 * 21 19 18 52 52 H 0.97002 * 120.00566 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1484 2.5613 -0.0013 6 8 3.4356 3.5426 -0.0017 7 7 5.4889 2.7022 -0.0014 8 6 6.3649 1.5286 -0.1201 9 6 7.3384 1.7554 -1.2809 10 6 8.0820 3.0758 -1.0674 11 1 8.6168 3.0421 -0.1181 12 6 9.0799 3.2890 -2.2074 13 6 7.0783 4.2309 -1.0461 14 6 6.1018 4.0322 0.1174 15 1 6.6381 4.1042 1.0637 16 6 5.0129 5.1056 0.0622 17 7 5.6283 6.4341 0.1818 18 6 4.6267 7.4954 0.0139 19 6 5.2938 8.8406 0.1421 20 8 6.4864 8.9085 0.3522 21 7 4.5652 9.9682 0.0224 22 6 5.1722 11.1920 0.1385 23 1 6.2342 11.2525 0.3255 24 6 4.4211 12.3545 0.0156 25 7 3.1289 12.2809 -0.2115 26 14 5.2480 14.0219 0.1745 27 1 5.7098 14.4748 -1.1623 28 1 4.2791 15.0048 0.7226 29 1 6.4125 13.9118 1.0893 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8464 0.8898 34 1 1.6887 1.8463 -0.8901 35 1 3.8568 0.6438 -0.8907 36 1 3.8574 0.6436 0.8892 37 1 6.9247 1.3956 0.8057 38 1 5.7627 0.6415 -0.3161 39 1 8.0560 0.9358 -1.3193 40 1 6.7835 1.7974 -2.2182 41 1 8.5454 3.3224 -3.1567 42 1 9.6100 4.2293 -2.0552 43 1 9.7957 2.4671 -2.2222 44 1 6.5258 4.2500 -1.9854 45 1 7.6107 5.1733 -0.9173 46 1 4.3122 4.9550 0.8835 47 1 4.4811 5.0352 -0.8866 48 1 6.1130 6.5302 1.0615 49 1 4.1683 7.4099 -0.9714 50 1 3.8592 7.3954 0.7815 51 1 3.6116 9.9139 -0.1460 52 1 2.6045 13.0924 -0.2977 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565956932.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:18 Heat of formation + Delta-G solvation = -113.104283 kcal Electronic energy + Delta-G solvation = -30467.148009 eV Core-core repulsion = 26273.855270 eV Total energy + Delta-G solvation = -4193.292739 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.88433 -38.44571 -38.12259 -37.68956 -35.48608 -34.19552 -33.80958 -32.41719 -31.24837 -31.00432 -28.70959 -27.10482 -26.91020 -25.08394 -24.23493 -23.72377 -23.04236 -21.43716 -20.49904 -19.38023 -18.96375 -17.82026 -17.48917 -16.70141 -16.40656 -16.14319 -15.72158 -15.65837 -15.23451 -15.20104 -14.62600 -14.51366 -14.31293 -14.11207 -14.00612 -13.75850 -13.63703 -13.35552 -13.17494 -13.00684 -12.67453 -12.23624 -12.14691 -12.04534 -12.00294 -11.79671 -11.63703 -11.51952 -11.46313 -11.40499 -11.11999 -11.07571 -10.95181 -10.64226 -10.46383 -10.35462 -10.16134 -10.01465 -9.52006 -9.44641 -8.79701 -8.33220 -7.90688 -7.76836 -6.35603 -3.76230 2.38667 2.56998 3.21777 3.29668 3.35730 3.44682 3.99858 4.18482 4.29788 4.38137 4.52566 4.55929 4.64956 4.67834 4.72825 4.87621 5.00904 5.02634 5.02955 5.05906 5.20596 5.22374 5.27299 5.32007 5.32897 5.37226 5.42733 5.44727 5.47838 5.51119 5.62731 5.66478 5.73996 5.91144 5.95979 5.98441 6.03706 6.12905 6.16965 6.24038 6.35262 6.40830 6.56104 6.76592 7.13548 7.38992 7.60664 7.80382 7.99158 8.13224 8.68591 9.24162 9.62010 10.13823 10.82356 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010702 B = 0.002373 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.620087 B =11795.296262 C =14136.089290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.397 6.397 3 C 0.075 3.925 4 C -0.140 4.140 5 C 0.516 3.484 6 O -0.529 6.529 7 N -0.607 5.607 8 C 0.107 3.893 9 C -0.130 4.130 10 C -0.095 4.095 11 H 0.070 0.930 12 C -0.146 4.146 13 C -0.116 4.116 14 C 0.151 3.849 15 H 0.071 0.929 16 C 0.070 3.930 17 N -0.675 5.675 18 C 0.058 3.942 19 C 0.443 3.557 20 O -0.584 6.584 21 N -0.566 5.566 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.020 3.980 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.051 0.949 47 H 0.082 0.918 48 H 0.343 0.657 49 H 0.084 0.916 50 H 0.042 0.958 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 -28.406 -0.905 28.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.317 6.317 3 C -0.002 4.002 4 C -0.180 4.180 5 C 0.304 3.696 6 O -0.406 6.406 7 N -0.341 5.341 8 C -0.016 4.016 9 C -0.168 4.168 10 C -0.114 4.114 11 H 0.089 0.911 12 C -0.203 4.203 13 C -0.154 4.154 14 C 0.048 3.952 15 H 0.089 0.911 16 C -0.058 4.058 17 N -0.309 5.309 18 C -0.075 4.075 19 C 0.229 3.771 20 O -0.469 6.469 21 N -0.203 5.203 22 C -0.427 4.427 23 H 0.120 0.880 24 C -0.181 4.181 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.195 1.195 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.112 0.888 46 H 0.069 0.931 47 H 0.101 0.899 48 H 0.161 0.839 49 H 0.102 0.898 50 H 0.060 0.940 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.604 -27.828 -1.438 27.911 hybrid contribution -0.897 0.905 0.737 1.472 sum 0.707 -26.923 -0.701 26.942 Atomic orbital electron populations 1.22736 0.80490 1.02703 1.00370 1.87780 1.20163 1.28102 1.95610 1.22181 0.91838 0.84175 1.01971 1.21538 0.95509 0.95628 1.05281 1.20392 0.82059 0.90961 0.76218 1.90802 1.61111 1.39376 1.49298 1.48179 1.05177 1.08009 1.72750 1.21790 0.92931 0.87705 0.99184 1.22000 0.98181 0.98219 0.98450 1.21176 0.96224 0.94580 0.99414 0.91148 1.21800 0.98592 1.01722 0.98186 1.21951 0.96390 0.98996 0.98046 1.21304 0.94360 0.80707 0.98830 0.91093 1.22508 0.93239 0.86740 1.03350 1.60060 1.28466 1.00977 1.41414 1.21555 0.93343 0.90972 1.01622 1.19881 0.87870 0.85146 0.84243 1.90503 1.15112 1.87039 1.54205 1.41874 1.10685 1.04807 1.62897 1.19699 0.95395 0.81837 1.45791 0.87967 1.25262 0.95445 0.99929 0.97445 1.69618 1.05540 1.29790 1.49486 0.85860 0.78724 0.81124 0.78574 1.20433 1.20986 1.19464 0.93855 0.89566 0.93875 0.92291 0.92262 0.88195 0.88194 0.91121 0.89597 0.90759 0.91406 0.92757 0.92199 0.92979 0.91722 0.88838 0.93135 0.89945 0.83863 0.89793 0.93995 0.77453 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.40 -3.73 10.70 -35.23 -0.38 -4.11 16 3 C 0.08 0.70 5.23 37.16 0.19 0.89 16 4 C -0.14 -1.11 4.48 -27.88 -0.12 -1.23 16 5 C 0.52 5.60 7.61 -10.98 -0.08 5.51 16 6 O -0.53 -7.62 11.39 5.55 0.06 -7.56 16 7 N -0.61 -5.88 2.97 -165.22 -0.49 -6.37 16 8 C 0.11 0.68 6.33 -3.71 -0.02 0.66 16 9 C -0.13 -0.86 5.36 -26.61 -0.14 -1.01 16 10 C -0.10 -0.81 2.68 -90.58 -0.24 -1.05 16 11 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 12 C -0.15 -1.20 9.19 37.16 0.34 -0.86 16 13 C -0.12 -1.31 4.42 -26.61 -0.12 -1.43 16 14 C 0.15 1.77 3.18 -67.60 -0.21 1.55 16 15 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 16 C 0.07 1.04 3.52 -3.83 -0.01 1.03 16 17 N -0.68 -11.73 5.48 -115.06 -0.63 -12.36 16 18 C 0.06 1.12 6.16 -4.98 -0.03 1.09 16 19 C 0.44 10.95 7.82 -10.99 -0.09 10.87 16 20 O -0.58 -16.28 15.78 5.55 0.09 -16.20 16 21 N -0.57 -14.96 5.29 -10.96 -0.06 -15.02 16 22 C -0.30 -8.55 9.68 -14.93 -0.14 -8.69 16 23 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 24 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -25.30 13.05 55.50 0.72 -24.58 16 26 Si 0.93 21.56 29.55 -169.99 -5.02 16.53 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 29 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.06 0.59 8.10 -51.92 -0.42 0.17 16 35 H 0.10 0.65 7.47 -51.93 -0.39 0.26 16 36 H 0.10 0.65 8.12 -51.93 -0.42 0.23 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.39 5.96 -51.93 -0.31 0.08 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.09 1.26 7.81 -51.93 -0.41 0.86 16 46 H 0.05 0.82 6.45 -51.92 -0.33 0.48 16 47 H 0.08 1.35 7.03 -51.93 -0.36 0.99 16 48 H 0.34 6.04 8.49 -39.29 -0.33 5.71 16 49 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 50 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.39 10.00 7.90 -40.82 -0.32 9.68 16 52 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 412.56 15.07 6.22 6.22 Total: -1.00 -33.43 412.56 -8.31 -41.74 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -9.15 Total: 12.55 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 0.33 Total: 9.15 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.46 Total: -58.33 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.23 Total: -27.86 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.43 -8.31 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565956932.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.364 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds