Wall clock time and date at job start Wed Apr 1 2020 01:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 114.00064 * 2 1 4 4 C 1.52999 * 109.47043 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46858 * 179.97438 * 4 3 2 6 6 O 1.21288 * 120.00476 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99885 * 179.97438 * 5 4 3 8 8 C 1.46925 * 120.62843 * 5.40815 * 7 5 4 9 9 C 1.53192 * 108.77642 * 126.41121 * 8 7 5 10 10 C 1.53037 * 109.31544 * 54.62782 * 9 8 7 11 11 H 1.09004 * 109.46025 * 58.65630 * 10 9 8 12 12 C 1.53000 * 109.46095 * 178.63004 * 10 9 8 13 13 C 1.53042 * 109.54272 * 298.63769 * 10 9 8 14 14 C 1.46928 * 120.62994 * 185.42041 * 7 5 4 15 15 H 1.09003 * 109.58490 * 113.65924 * 14 7 5 16 16 C 1.52999 * 109.58877 * 353.38013 * 14 7 5 17 17 N 1.46896 * 109.47302 * 179.97438 * 16 14 7 18 18 C 1.46900 * 111.00288 * 174.99224 * 17 16 14 19 19 C 1.50695 * 109.47176 * 180.02562 * 18 17 16 20 20 O 1.21291 * 120.00140 * 0.02562 * 19 18 17 21 21 N 1.34781 * 119.99798 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99808 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00377 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99893 * 180.02562 * 22 21 19 25 25 N 1.31409 * 119.99977 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99934 * 179.97438 * 24 22 21 27 27 H 1.48510 * 109.46963 * 90.00280 * 26 24 22 28 28 H 1.48501 * 109.47469 * 209.99862 * 26 24 22 29 29 H 1.48495 * 109.47466 * 330.00306 * 26 24 22 30 30 H 1.08998 * 109.46450 * 60.00663 * 1 2 3 31 31 H 1.08997 * 109.46846 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47121 * 300.00486 * 1 2 3 33 33 H 1.08997 * 109.47473 * 59.98971 * 3 2 1 34 34 H 1.09007 * 109.46895 * 299.99750 * 3 2 1 35 35 H 1.08993 * 109.47494 * 59.99525 * 4 3 2 36 36 H 1.09001 * 109.46765 * 299.99356 * 4 3 2 37 37 H 1.09003 * 109.58158 * 246.19574 * 8 7 5 38 38 H 1.08995 * 109.58764 * 6.62053 * 8 7 5 39 39 H 1.08997 * 109.49768 * 174.58732 * 9 8 7 40 40 H 1.09004 * 109.49359 * 294.65087 * 9 8 7 41 41 H 1.08994 * 109.47202 * 60.00083 * 12 10 9 42 42 H 1.09008 * 109.47159 * 180.02562 * 12 10 9 43 43 H 1.09002 * 109.47232 * 300.00086 * 12 10 9 44 44 H 1.08992 * 109.49567 * 301.41598 * 13 10 9 45 45 H 1.08996 * 109.49975 * 181.30873 * 13 10 9 46 46 H 1.09009 * 109.47208 * 60.00312 * 16 14 7 47 47 H 1.08996 * 109.47336 * 300.00651 * 16 14 7 48 48 H 1.00904 * 111.00054 * 298.94744 * 17 16 14 49 49 H 1.09003 * 109.46990 * 300.00429 * 18 17 16 50 50 H 1.09004 * 109.46936 * 60.00034 * 18 17 16 51 51 H 0.96994 * 120.00210 * 0.02562 * 21 19 18 52 52 H 0.97002 * 120.00566 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1484 2.5613 -0.0013 6 8 3.4356 3.5426 -0.0017 7 7 5.4889 2.7022 -0.0014 8 6 6.3649 1.5286 -0.1201 9 6 7.3384 1.7554 -1.2809 10 6 8.0820 3.0758 -1.0674 11 1 8.6168 3.0421 -0.1181 12 6 9.0799 3.2890 -2.2074 13 6 7.0783 4.2309 -1.0461 14 6 6.1018 4.0322 0.1174 15 1 6.6381 4.1042 1.0637 16 6 5.0129 5.1056 0.0622 17 7 5.6283 6.4341 0.1818 18 6 4.6267 7.4954 0.0139 19 6 5.2938 8.8406 0.1421 20 8 6.4864 8.9085 0.3522 21 7 4.5652 9.9682 0.0224 22 6 5.1722 11.1920 0.1385 23 1 6.2342 11.2525 0.3255 24 6 4.4211 12.3545 0.0156 25 7 3.1289 12.2809 -0.2115 26 14 5.2480 14.0219 0.1745 27 1 5.7098 14.4748 -1.1623 28 1 4.2791 15.0048 0.7226 29 1 6.4125 13.9118 1.0893 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8464 0.8898 34 1 1.6887 1.8463 -0.8901 35 1 3.8568 0.6438 -0.8907 36 1 3.8574 0.6436 0.8892 37 1 6.9247 1.3956 0.8057 38 1 5.7627 0.6415 -0.3161 39 1 8.0560 0.9358 -1.3193 40 1 6.7835 1.7974 -2.2182 41 1 8.5454 3.3224 -3.1567 42 1 9.6100 4.2293 -2.0552 43 1 9.7957 2.4671 -2.2222 44 1 6.5258 4.2500 -1.9854 45 1 7.6107 5.1733 -0.9173 46 1 4.3122 4.9550 0.8835 47 1 4.4811 5.0352 -0.8866 48 1 6.1130 6.5302 1.0615 49 1 4.1683 7.4099 -0.9714 50 1 3.8592 7.3954 0.7815 51 1 3.6116 9.9139 -0.1460 52 1 2.6045 13.0924 -0.2977 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565956932.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:15 Heat of formation + Delta-G solvation = -137.589082 kcal Electronic energy + Delta-G solvation = -30468.209750 eV Core-core repulsion = 26273.855270 eV Total energy + Delta-G solvation = -4194.354480 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.73544 -40.15350 -39.13163 -38.44993 -36.87926 -35.86696 -34.97255 -33.44438 -33.17716 -31.94350 -29.52411 -28.55336 -27.51042 -26.68167 -25.34309 -24.58852 -24.05436 -22.43254 -21.30818 -21.07815 -20.04850 -19.80975 -18.42593 -17.65365 -17.45644 -17.25395 -16.89640 -16.63341 -16.56660 -16.23515 -15.97185 -15.78692 -15.52180 -15.24669 -14.96726 -14.81900 -14.70541 -14.50696 -14.26533 -14.12870 -13.80065 -13.56739 -13.34469 -13.14795 -13.02197 -12.84815 -12.81259 -12.71369 -12.46665 -12.43464 -12.35125 -12.15719 -12.12777 -11.99685 -11.86002 -11.52442 -11.37550 -11.21884 -10.68741 -10.52549 -10.34921 -10.04119 -9.64029 -9.17308 -8.48049 -5.97553 1.37117 1.40297 1.53949 1.57406 1.78989 2.01595 2.28152 2.74673 3.00912 3.18474 3.52406 3.61375 3.72576 3.84264 3.92644 4.02569 4.07283 4.13330 4.23301 4.27359 4.30895 4.43174 4.47582 4.50774 4.51506 4.52760 4.55474 4.62996 4.68867 4.79040 4.81744 4.83888 4.84964 4.88971 4.95253 5.02219 5.03330 5.11489 5.22971 5.30400 5.38888 5.39292 5.56157 5.63227 5.84547 6.04675 6.12108 6.36813 6.43873 6.57296 7.09720 7.15101 7.52771 8.07434 8.69679 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010702 B = 0.002373 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.620087 B =11795.296262 C =14136.089290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.077 3.923 4 C -0.128 4.128 5 C 0.509 3.491 6 O -0.573 6.573 7 N -0.603 5.603 8 C 0.102 3.898 9 C -0.125 4.125 10 C -0.092 4.092 11 H 0.077 0.923 12 C -0.144 4.144 13 C -0.109 4.109 14 C 0.155 3.845 15 H 0.077 0.923 16 C 0.084 3.916 17 N -0.680 5.680 18 C 0.072 3.928 19 C 0.441 3.559 20 O -0.619 6.619 21 N -0.574 5.574 22 C -0.334 4.334 23 H 0.081 0.919 24 C -0.016 4.016 25 N -0.922 5.922 26 Si 0.997 3.003 27 H -0.270 1.270 28 H -0.270 1.270 29 H -0.271 1.271 30 H 0.045 0.955 31 H 0.105 0.895 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.040 0.960 47 H 0.065 0.935 48 H 0.341 0.659 49 H 0.093 0.907 50 H 0.056 0.944 51 H 0.395 0.605 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.484 -30.567 -0.770 30.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C 0.000 4.000 4 C -0.167 4.167 5 C 0.299 3.701 6 O -0.453 6.453 7 N -0.337 5.337 8 C -0.020 4.020 9 C -0.163 4.163 10 C -0.111 4.111 11 H 0.096 0.904 12 C -0.202 4.202 13 C -0.147 4.147 14 C 0.051 3.949 15 H 0.095 0.905 16 C -0.044 4.044 17 N -0.313 5.313 18 C -0.061 4.061 19 C 0.228 3.772 20 O -0.505 6.505 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.099 0.901 24 C -0.215 4.215 25 N -0.563 5.563 26 Si 0.820 3.180 27 H -0.196 1.196 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.064 0.936 31 H 0.123 0.877 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.058 0.942 47 H 0.083 0.917 48 H 0.160 0.840 49 H 0.111 0.889 50 H 0.074 0.926 51 H 0.229 0.771 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.060 -30.041 -1.312 30.140 hybrid contribution -1.072 1.534 0.677 1.990 sum 0.988 -28.508 -0.635 28.532 Atomic orbital electron populations 1.22928 0.79396 1.04061 1.00623 1.87752 1.21448 1.27825 1.95617 1.22106 0.92973 0.84140 1.00812 1.21485 0.94171 0.93783 1.07305 1.20957 0.82129 0.91718 0.75303 1.90782 1.62103 1.41032 1.51397 1.48257 1.05353 1.08051 1.71989 1.22119 0.92917 0.86986 0.99937 1.21980 0.98479 0.97649 0.98180 1.21160 0.95605 0.94422 0.99868 0.90438 1.21787 0.98779 1.01785 0.97819 1.21832 0.96648 0.99309 0.96956 1.21118 0.93337 0.81152 0.99250 0.90464 1.22377 0.93872 0.86242 1.01882 1.60077 1.28200 1.01702 1.41370 1.21382 0.93485 0.88610 1.02575 1.20728 0.87522 0.86446 0.82463 1.90470 1.16776 1.87839 1.55411 1.41948 1.10849 1.04919 1.63366 1.19703 0.94912 0.83459 1.48261 0.90097 1.26121 0.96050 1.03143 0.96212 1.69688 1.06468 1.31180 1.49003 0.84875 0.77854 0.76500 0.78771 1.19555 1.19464 1.19578 0.93643 0.87686 0.93646 0.93515 0.93550 0.86019 0.85969 0.89442 0.86883 0.88009 0.92107 0.93295 0.93686 0.90973 0.93385 0.91578 0.94168 0.91669 0.84037 0.88880 0.92594 0.77129 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.57 16 2 O -0.41 -7.01 10.70 -148.98 -1.59 -8.61 16 3 C 0.08 1.37 5.23 71.98 0.38 1.74 16 4 C -0.13 -1.74 4.48 29.85 0.13 -1.60 16 5 C 0.51 10.53 7.61 87.66 0.67 11.19 16 6 O -0.57 -16.78 11.39 -3.05 -0.03 -16.82 16 7 N -0.60 -10.73 2.97 -795.01 -2.36 -13.09 16 8 C 0.10 0.95 6.33 86.36 0.55 1.49 16 9 C -0.12 -1.26 5.36 30.67 0.16 -1.10 16 10 C -0.09 -1.42 2.68 -10.77 -0.03 -1.45 16 11 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 12 C -0.14 -2.22 9.19 71.98 0.66 -1.56 16 13 C -0.11 -2.50 4.42 30.67 0.14 -2.36 16 14 C 0.15 3.60 3.18 44.97 0.14 3.74 16 15 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 16 C 0.08 2.57 3.52 86.30 0.30 2.87 16 17 N -0.68 -24.34 5.48 -517.94 -2.84 -27.18 16 18 C 0.07 2.88 6.16 85.56 0.53 3.40 16 19 C 0.44 22.49 7.82 87.65 0.69 23.18 16 20 O -0.62 -35.68 15.78 -3.06 -0.05 -35.73 16 21 N -0.57 -31.24 5.29 -306.98 -1.62 -32.87 16 22 C -0.33 -19.68 9.68 84.04 0.81 -18.87 16 23 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 24 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 25 N -0.92 -51.66 13.05 21.66 0.28 -51.37 16 26 Si 1.00 44.09 29.55 68.60 2.03 46.12 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 29 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 30 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.05 0.93 8.10 -2.38 -0.02 0.91 16 35 H 0.12 1.16 7.47 -2.39 -0.02 1.14 16 36 H 0.12 1.16 8.12 -2.39 -0.02 1.14 16 37 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.11 0.50 5.96 -2.39 -0.01 0.48 16 39 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.07 1.87 7.81 -2.39 -0.02 1.85 16 46 H 0.04 1.33 6.45 -2.38 -0.02 1.32 16 47 H 0.06 2.23 7.03 -2.39 -0.02 2.21 16 48 H 0.34 12.40 8.49 -89.69 -0.76 11.64 16 49 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 50 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 51 H 0.40 20.68 7.90 -92.71 -0.73 19.95 16 52 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -74.39 412.56 0.07 -74.32 By element: Atomic # 1 Polarization: 43.96 SS G_CDS: -0.58 Total: 43.38 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 6.84 Total: 21.85 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -6.54 Total: -124.51 kcal Atomic # 8 Polarization: -59.48 SS G_CDS: -1.68 Total: -61.15 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -74.39 0.07 -74.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565956932.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.270 kcal (2) G-P(sol) polarization free energy of solvation -74.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds