Wall clock time and date at job start Wed Apr 1 2020 00:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47331 * 2 1 4 4 O 1.42904 * 109.46771 * 119.99660 * 2 1 3 5 5 C 1.42898 * 113.99522 * 90.00183 * 4 2 1 6 6 C 1.50706 * 109.47060 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99699 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00080 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99969 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.47194 * 34.71875 * 9 8 6 11 11 C 1.52997 * 109.46691 * 274.72265 * 9 8 6 12 12 C 1.53004 * 109.47406 * 299.99403 * 11 9 8 13 13 C 1.52993 * 109.47226 * 300.00825 * 12 11 9 14 14 C 1.52997 * 109.47602 * 59.99295 * 13 12 11 15 15 H 1.09002 * 109.46832 * 60.00019 * 14 13 12 16 16 N 1.46898 * 109.47607 * 179.97438 * 14 13 12 17 17 C 1.46899 * 111.00205 * 275.00301 * 16 14 13 18 18 C 1.50699 * 109.47074 * 179.97438 * 17 16 14 19 19 O 1.21291 * 119.99929 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99744 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99728 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00037 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00132 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99726 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00404 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47209 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47315 * 119.99724 * 25 23 21 28 28 H 1.48504 * 109.47366 * 240.00206 * 25 23 21 29 29 C 1.52993 * 109.47100 * 154.71955 * 9 8 6 30 30 H 1.09001 * 109.47270 * 300.00181 * 1 2 3 31 31 H 1.08999 * 109.46809 * 60.00105 * 1 2 3 32 32 H 1.08997 * 109.47384 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47270 * 239.99819 * 2 1 3 34 34 H 1.08997 * 109.47214 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46823 * 300.00205 * 3 2 1 36 36 H 1.09001 * 109.47091 * 59.99709 * 3 2 1 37 37 H 1.09004 * 109.47454 * 60.00148 * 5 4 2 38 38 H 1.08998 * 109.47671 * 299.99929 * 5 4 2 39 39 H 0.97005 * 120.00161 * 359.72088 * 8 6 5 40 40 H 1.08995 * 109.47574 * 60.00208 * 11 9 8 41 41 H 1.09002 * 109.46832 * 179.97438 * 11 9 8 42 42 H 1.08996 * 109.47149 * 180.02562 * 12 11 9 43 43 H 1.09002 * 109.46655 * 60.00467 * 12 11 9 44 44 H 1.09002 * 109.47012 * 299.99424 * 13 12 11 45 45 H 1.08999 * 109.47163 * 179.97438 * 13 12 11 46 46 H 1.00901 * 110.99389 * 38.95534 * 16 14 13 47 47 H 1.08997 * 109.46974 * 299.99950 * 17 16 14 48 48 H 1.09005 * 109.46992 * 59.99639 * 17 16 14 49 49 H 0.96994 * 120.00723 * 359.97438 * 20 18 17 50 50 H 0.97010 * 120.00010 * 180.02562 * 24 23 21 51 51 H 1.09002 * 109.47012 * 179.97438 * 29 9 8 52 52 H 1.08996 * 109.47599 * 300.00068 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2000 -2.0781 0.9887 6 6 2.7013 -2.6832 2.2747 7 8 2.8759 -1.9807 3.2478 8 7 2.9565 -4.0048 2.3431 9 6 3.4433 -4.5931 3.5934 10 1 2.9895 -4.0762 4.4390 11 6 4.9649 -4.4506 3.6655 12 6 5.6019 -5.1762 2.4786 13 6 5.2256 -6.6584 2.5253 14 6 3.7040 -6.8009 2.4532 15 1 3.3418 -6.3632 1.5229 16 7 3.3427 -8.2241 2.4974 17 6 3.3991 -8.8234 1.1574 18 6 3.0238 -10.2804 1.2427 19 8 2.7369 -10.7711 2.3142 20 7 3.0068 -11.0382 0.1283 21 6 2.6648 -12.3636 0.2057 22 1 2.4094 -12.8005 1.1598 23 6 2.6467 -13.1448 -0.9432 24 7 2.9570 -12.6130 -2.1042 25 14 2.1815 -14.9507 -0.8377 26 1 1.8784 -15.3022 0.5730 27 1 0.9845 -15.2036 -1.6794 28 1 3.3122 -15.7825 -1.3224 29 6 3.0669 -6.0753 3.6401 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.9319 -2.2467 0.1987 38 1 1.2538 -2.5433 0.7125 39 1 2.8137 -4.5673 1.5658 40 1 5.2330 -3.3947 3.6323 41 1 5.3270 -4.8879 4.5960 42 1 6.6860 -5.0751 2.5302 43 1 5.2397 -4.7385 1.5483 44 1 5.5878 -7.0961 3.4555 45 1 5.6790 -7.1752 1.6795 46 1 3.9324 -8.7268 3.1436 47 1 2.7019 -8.3062 0.4984 48 1 4.4102 -8.7316 0.7607 49 1 3.2358 -10.6458 -0.7287 50 1 2.9441 -13.1583 -2.9065 51 1 3.4295 -6.5131 4.5702 52 1 1.9829 -6.1768 3.5887 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567159854.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:50 Heat of formation + Delta-G solvation = -136.888244 kcal Electronic energy + Delta-G solvation = -29885.192809 eV Core-core repulsion = 25690.868720 eV Total energy + Delta-G solvation = -4194.324089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.54708 -39.12002 -38.31424 -37.77522 -35.14141 -33.93011 -33.31940 -33.06458 -31.26586 -30.56095 -29.54288 -27.86951 -27.37622 -26.16053 -24.02205 -22.72774 -21.81176 -21.70422 -21.37606 -19.58877 -19.13028 -17.93525 -17.58376 -17.33705 -16.49307 -16.28100 -15.74682 -15.46178 -15.22537 -14.98482 -14.84192 -14.50798 -14.40637 -14.15114 -13.85217 -13.75019 -13.34415 -13.25129 -13.08899 -12.87472 -12.59426 -12.53127 -12.43312 -12.35717 -12.30316 -12.04006 -11.84214 -11.70031 -11.54905 -11.31391 -11.13448 -11.09660 -10.93165 -10.59352 -10.38139 -10.35889 -10.24111 -10.05902 -9.95805 -9.55023 -9.26406 -8.49376 -8.06801 -7.98603 -6.45013 -3.85743 2.39873 2.53109 3.14013 3.24865 3.32107 3.62331 3.87293 4.01463 4.23558 4.37107 4.52439 4.56665 4.57568 4.63386 4.73659 4.76855 4.83207 4.86121 4.95997 5.00098 5.14027 5.19965 5.21233 5.22858 5.29826 5.36405 5.39466 5.41995 5.43509 5.48600 5.59283 5.73940 5.77518 5.81286 5.81683 5.85283 5.92494 5.94704 6.05716 6.09527 6.19656 6.25210 6.33333 6.72890 7.19257 7.26533 7.52543 7.61885 8.00911 8.03525 8.57926 9.15021 9.51092 10.02419 10.72760 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013465 B = 0.001932 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.953100 B =14490.068963 C =15876.399989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.078 3.922 3 C -0.149 4.149 4 O -0.358 6.358 5 C 0.042 3.958 6 C 0.515 3.485 7 O -0.521 6.521 8 N -0.721 5.721 9 C 0.150 3.850 10 H 0.090 0.910 11 C -0.131 4.131 12 C -0.112 4.112 13 C -0.153 4.153 14 C 0.089 3.911 15 H 0.071 0.929 16 N -0.663 5.663 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C -0.115 4.115 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.400 0.600 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.351 0.649 47 H 0.084 0.916 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.081 0.919 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.727 24.225 1.599 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.276 6.276 5 C -0.038 4.038 6 C 0.300 3.700 7 O -0.396 6.396 8 N -0.376 5.376 9 C 0.046 3.954 10 H 0.108 0.892 11 C -0.169 4.169 12 C -0.150 4.150 13 C -0.193 4.193 14 C -0.022 4.022 15 H 0.089 0.911 16 N -0.294 5.294 17 C -0.082 4.082 18 C 0.225 3.775 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.153 4.153 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.236 0.764 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.171 0.829 47 H 0.102 0.898 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.100 0.900 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.007 24.513 2.997 24.716 hybrid contribution 0.774 -1.230 -1.552 2.126 sum 1.782 23.283 1.446 23.396 Atomic orbital electron populations 1.22318 0.95746 1.02545 1.02826 1.22186 0.93870 0.94037 0.87833 1.21851 1.01915 0.94235 1.02653 1.88063 1.86606 1.17651 1.35290 1.22256 1.01339 0.84273 0.95956 1.20233 0.77790 0.82340 0.89682 1.90726 1.50918 1.60453 1.37489 1.46057 1.67961 1.07972 1.15584 1.20996 0.94077 0.93634 0.86742 0.89188 1.21934 0.94886 1.01014 0.99105 1.21422 1.00150 0.94942 0.98490 1.22360 0.97509 0.96855 1.02528 1.21558 0.92567 0.89755 0.98335 0.91069 1.60187 1.59740 1.00906 1.08568 1.21699 0.99959 0.95222 0.91316 1.19824 0.84982 0.87383 0.85260 1.90529 1.53755 1.73893 1.28498 1.41873 1.60063 1.09951 1.08199 1.19758 1.42611 0.84612 0.95847 0.87856 1.25265 0.97459 1.00589 0.94686 1.69621 1.48865 1.37229 0.98635 0.85799 0.78024 0.81906 0.78618 1.19201 1.20735 1.20772 1.21803 1.02058 0.91988 0.99478 0.91564 0.91467 0.92387 0.91980 0.91899 0.91110 0.91597 0.90309 0.90262 0.76422 0.91500 0.90840 0.92052 0.92140 0.91410 0.91796 0.82899 0.89767 0.93889 0.77505 0.91928 0.90018 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.12 9.53 37.16 0.35 -0.77 16 2 C 0.08 0.56 3.34 -26.73 -0.09 0.47 16 3 C -0.15 -0.95 9.56 37.16 0.36 -0.59 16 4 O -0.36 -3.72 9.52 -55.14 -0.52 -4.24 16 5 C 0.04 0.34 6.23 36.01 0.22 0.56 16 6 C 0.51 5.51 7.87 -10.98 -0.09 5.42 16 7 O -0.52 -7.86 16.16 -14.35 -0.23 -8.09 16 8 N -0.72 -6.22 4.23 -53.81 -0.23 -6.45 16 9 C 0.15 1.40 2.79 -67.93 -0.19 1.21 16 10 H 0.09 0.97 7.57 -51.93 -0.39 0.57 16 11 C -0.13 -1.17 5.61 -26.73 -0.15 -1.32 16 12 C -0.11 -0.95 5.77 -26.73 -0.15 -1.10 16 13 C -0.15 -1.47 5.17 -26.74 -0.14 -1.61 16 14 C 0.09 0.93 2.29 -67.71 -0.16 0.78 16 15 H 0.07 0.68 6.16 -51.93 -0.32 0.36 16 16 N -0.66 -9.75 5.87 -107.99 -0.63 -10.38 16 17 C 0.05 0.83 5.96 -4.98 -0.03 0.80 16 18 C 0.44 10.08 7.82 -10.99 -0.09 9.99 16 19 O -0.58 -15.52 15.78 5.55 0.09 -15.43 16 20 N -0.56 -13.98 5.29 -10.96 -0.06 -14.03 16 21 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.18 13.05 55.50 0.72 -23.45 16 25 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 29 C -0.11 -1.12 5.22 -26.73 -0.14 -1.26 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 33 H 0.06 0.35 7.79 -51.93 -0.40 -0.06 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 38 H 0.08 0.49 7.87 -51.93 -0.41 0.08 16 39 H 0.40 2.73 6.87 -40.82 -0.28 2.45 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.50 7.60 -51.93 -0.39 0.10 16 44 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 45 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 46 H 0.35 5.47 8.17 -39.29 -0.32 5.15 16 47 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 48 H 0.04 0.64 7.43 -51.93 -0.39 0.25 16 49 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 50 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 51 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 416.95 15.07 6.28 6.28 Total: -1.00 -33.84 416.95 -9.15 -43.00 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -9.02 Total: 12.32 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -0.52 Total: 4.70 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.20 Total: -54.31 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.67 Total: -27.76 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.84 -9.15 -43.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567159854.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.892 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds