Wall clock time and date at job start Wed Apr 1 2020 00:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47331 * 2 1 4 4 O 1.42904 * 109.46771 * 119.99660 * 2 1 3 5 5 C 1.42898 * 113.99522 * 90.00183 * 4 2 1 6 6 C 1.50706 * 109.47060 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99699 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00080 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99969 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.47194 * 34.71875 * 9 8 6 11 11 C 1.52997 * 109.46691 * 274.72265 * 9 8 6 12 12 C 1.53004 * 109.47406 * 299.99403 * 11 9 8 13 13 C 1.52993 * 109.47226 * 300.00825 * 12 11 9 14 14 C 1.52997 * 109.47602 * 59.99295 * 13 12 11 15 15 H 1.09002 * 109.46832 * 60.00019 * 14 13 12 16 16 N 1.46898 * 109.47607 * 179.97438 * 14 13 12 17 17 C 1.46899 * 111.00205 * 275.00301 * 16 14 13 18 18 C 1.50699 * 109.47074 * 179.97438 * 17 16 14 19 19 O 1.21291 * 119.99929 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99744 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99728 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00037 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00132 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99726 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00404 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47209 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47315 * 119.99724 * 25 23 21 28 28 H 1.48504 * 109.47366 * 240.00206 * 25 23 21 29 29 C 1.52993 * 109.47100 * 154.71955 * 9 8 6 30 30 H 1.09001 * 109.47270 * 300.00181 * 1 2 3 31 31 H 1.08999 * 109.46809 * 60.00105 * 1 2 3 32 32 H 1.08997 * 109.47384 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47270 * 239.99819 * 2 1 3 34 34 H 1.08997 * 109.47214 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46823 * 300.00205 * 3 2 1 36 36 H 1.09001 * 109.47091 * 59.99709 * 3 2 1 37 37 H 1.09004 * 109.47454 * 60.00148 * 5 4 2 38 38 H 1.08998 * 109.47671 * 299.99929 * 5 4 2 39 39 H 0.97005 * 120.00161 * 359.72088 * 8 6 5 40 40 H 1.08995 * 109.47574 * 60.00208 * 11 9 8 41 41 H 1.09002 * 109.46832 * 179.97438 * 11 9 8 42 42 H 1.08996 * 109.47149 * 180.02562 * 12 11 9 43 43 H 1.09002 * 109.46655 * 60.00467 * 12 11 9 44 44 H 1.09002 * 109.47012 * 299.99424 * 13 12 11 45 45 H 1.08999 * 109.47163 * 179.97438 * 13 12 11 46 46 H 1.00901 * 110.99389 * 38.95534 * 16 14 13 47 47 H 1.08997 * 109.46974 * 299.99950 * 17 16 14 48 48 H 1.09005 * 109.46992 * 59.99639 * 17 16 14 49 49 H 0.96994 * 120.00723 * 359.97438 * 20 18 17 50 50 H 0.97010 * 120.00010 * 180.02562 * 24 23 21 51 51 H 1.09002 * 109.47012 * 179.97438 * 29 9 8 52 52 H 1.08996 * 109.47599 * 300.00068 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2000 -2.0781 0.9887 6 6 2.7013 -2.6832 2.2747 7 8 2.8759 -1.9807 3.2478 8 7 2.9565 -4.0048 2.3431 9 6 3.4433 -4.5931 3.5934 10 1 2.9895 -4.0762 4.4390 11 6 4.9649 -4.4506 3.6655 12 6 5.6019 -5.1762 2.4786 13 6 5.2256 -6.6584 2.5253 14 6 3.7040 -6.8009 2.4532 15 1 3.3418 -6.3632 1.5229 16 7 3.3427 -8.2241 2.4974 17 6 3.3991 -8.8234 1.1574 18 6 3.0238 -10.2804 1.2427 19 8 2.7369 -10.7711 2.3142 20 7 3.0068 -11.0382 0.1283 21 6 2.6648 -12.3636 0.2057 22 1 2.4094 -12.8005 1.1598 23 6 2.6467 -13.1448 -0.9432 24 7 2.9570 -12.6130 -2.1042 25 14 2.1815 -14.9507 -0.8377 26 1 1.8784 -15.3022 0.5730 27 1 0.9845 -15.2036 -1.6794 28 1 3.3122 -15.7825 -1.3224 29 6 3.0669 -6.0753 3.6401 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.9319 -2.2467 0.1987 38 1 1.2538 -2.5433 0.7125 39 1 2.8137 -4.5673 1.5658 40 1 5.2330 -3.3947 3.6323 41 1 5.3270 -4.8879 4.5960 42 1 6.6860 -5.0751 2.5302 43 1 5.2397 -4.7385 1.5483 44 1 5.5878 -7.0961 3.4555 45 1 5.6790 -7.1752 1.6795 46 1 3.9324 -8.7268 3.1436 47 1 2.7019 -8.3062 0.4984 48 1 4.4102 -8.7316 0.7607 49 1 3.2358 -10.6458 -0.7287 50 1 2.9441 -13.1583 -2.9065 51 1 3.4295 -6.5131 4.5702 52 1 1.9829 -6.1768 3.5887 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567159854.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:49 Heat of formation + Delta-G solvation = -161.275674 kcal Electronic energy + Delta-G solvation = -29886.250328 eV Core-core repulsion = 25690.868720 eV Total energy + Delta-G solvation = -4195.381608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37255 -40.23812 -39.60550 -38.70010 -36.35041 -35.74199 -34.20244 -33.65973 -33.24153 -31.38057 -30.57103 -28.47137 -27.93125 -27.72749 -25.65622 -23.49909 -22.66883 -22.25783 -22.17518 -21.11742 -20.22007 -19.85979 -18.35926 -18.02084 -17.79553 -17.05796 -16.93044 -16.47071 -16.33866 -16.20204 -15.99403 -15.72614 -15.50184 -15.18532 -15.02700 -14.73820 -14.54775 -14.19518 -13.89156 -13.70500 -13.56137 -13.49298 -13.25461 -13.20587 -13.17009 -13.04803 -13.00261 -12.87674 -12.79328 -12.39561 -12.34956 -12.14931 -12.11535 -11.71300 -11.63488 -11.50931 -11.40941 -11.19451 -10.82473 -10.63521 -10.32128 -10.07215 -9.99762 -9.21961 -8.46131 -5.94275 1.37009 1.42680 1.56347 1.59786 1.85584 2.07586 2.29760 2.90770 3.02767 3.21643 3.51039 3.71273 3.78378 3.81317 4.00794 4.05052 4.11030 4.19437 4.19745 4.22687 4.29331 4.32924 4.34557 4.43013 4.48908 4.57797 4.63695 4.64488 4.72982 4.75552 4.83192 4.86004 4.91461 4.95145 5.06757 5.11120 5.14992 5.27795 5.29601 5.33441 5.34971 5.39250 5.42522 5.56410 5.93732 6.16333 6.17186 6.43985 6.56644 6.61811 7.14376 7.24774 7.58536 8.14151 8.71346 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013465 B = 0.001932 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.953100 B =14490.068963 C =15876.399989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.072 3.928 3 C -0.149 4.149 4 O -0.392 6.392 5 C 0.042 3.958 6 C 0.511 3.489 7 O -0.573 6.573 8 N -0.708 5.708 9 C 0.156 3.844 10 H 0.074 0.926 11 C -0.126 4.126 12 C -0.104 4.104 13 C -0.147 4.147 14 C 0.092 3.908 15 H 0.088 0.912 16 N -0.677 5.677 17 C 0.066 3.934 18 C 0.437 3.563 19 O -0.625 6.625 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.271 1.271 29 C -0.106 4.106 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.412 0.588 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.344 0.656 47 H 0.107 0.893 48 H 0.067 0.933 49 H 0.397 0.603 50 H 0.277 0.723 51 H 0.080 0.920 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.965 24.578 -0.253 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.015 3.985 3 C -0.207 4.207 4 O -0.312 6.312 5 C -0.038 4.038 6 C 0.298 3.702 7 O -0.451 6.451 8 N -0.363 5.363 9 C 0.051 3.949 10 H 0.092 0.908 11 C -0.164 4.164 12 C -0.142 4.142 13 C -0.186 4.186 14 C -0.017 4.017 15 H 0.106 0.894 16 N -0.308 5.308 17 C -0.066 4.066 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.199 1.199 27 H -0.197 1.197 28 H -0.196 1.196 29 C -0.144 4.144 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.070 0.930 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.250 0.750 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.163 0.837 47 H 0.125 0.875 48 H 0.085 0.915 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.099 0.901 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.251 24.871 1.098 24.927 hybrid contribution 0.695 -1.299 -0.933 1.744 sum 1.946 23.572 0.165 23.653 Atomic orbital electron populations 1.22311 0.95319 1.02673 1.02953 1.22402 0.94271 0.94219 0.87625 1.21883 1.01604 0.94154 1.03026 1.88031 1.87052 1.18829 1.37239 1.22391 1.03046 0.83492 0.94841 1.20796 0.76876 0.82446 0.90055 1.90704 1.53309 1.61674 1.39445 1.45956 1.67005 1.07641 1.15676 1.20862 0.94384 0.93002 0.86700 0.90819 1.21874 0.94397 1.00321 0.99844 1.21365 1.00536 0.93947 0.98401 1.22278 0.96439 0.97508 1.02391 1.21619 0.93476 0.87332 0.99301 0.89409 1.60180 1.60378 1.02715 1.07485 1.21563 1.01615 0.90571 0.92844 1.20983 0.82874 0.89762 0.83945 1.90499 1.55123 1.75516 1.29969 1.41935 1.60701 1.09448 1.09037 1.19685 1.44765 0.86408 0.95353 0.90454 1.26001 0.96862 1.04279 0.94120 1.69671 1.48751 1.38614 0.99020 0.84899 0.78234 0.77172 0.78212 1.19915 1.19651 1.19642 1.21693 1.01405 0.92008 0.99306 0.93060 0.89705 0.92249 0.89940 0.92397 0.88974 0.92981 0.87494 0.88134 0.75001 0.92794 0.90345 0.91385 0.91339 0.91697 0.91872 0.83681 0.87513 0.91522 0.76924 0.91334 0.90126 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 9.53 71.98 0.69 -1.28 16 2 C 0.07 0.92 3.34 30.59 0.10 1.02 16 3 C -0.15 -1.75 9.56 71.98 0.69 -1.06 16 4 O -0.39 -7.82 9.52 -129.94 -1.24 -9.05 16 5 C 0.04 0.59 6.23 71.24 0.44 1.04 16 6 C 0.51 10.48 7.87 87.66 0.69 11.17 16 7 O -0.57 -17.55 16.16 16.00 0.26 -17.29 16 8 N -0.71 -11.05 4.23 -442.54 -1.87 -12.93 16 9 C 0.16 2.76 2.79 44.99 0.13 2.89 16 10 H 0.07 1.60 7.57 -2.39 -0.02 1.58 16 11 C -0.13 -2.10 5.61 30.59 0.17 -1.93 16 12 C -0.10 -1.52 5.77 30.59 0.18 -1.35 16 13 C -0.15 -2.47 5.17 30.59 0.16 -2.31 16 14 C 0.09 1.73 2.29 44.92 0.10 1.84 16 15 H 0.09 1.38 6.16 -2.39 -0.01 1.36 16 16 N -0.68 -18.82 5.87 -495.58 -2.91 -21.73 16 17 C 0.07 2.04 5.96 85.56 0.51 2.55 16 18 C 0.44 19.90 7.82 87.66 0.69 20.59 16 19 O -0.62 -33.78 15.78 -3.06 -0.05 -33.83 16 20 N -0.57 -28.49 5.29 -306.99 -1.62 -30.11 16 21 C -0.33 -18.56 9.68 84.04 0.81 -17.75 16 22 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -48.51 13.05 21.66 0.28 -48.23 16 25 Si 0.99 42.32 29.55 68.60 2.03 44.35 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 C -0.11 -1.93 5.22 30.59 0.16 -1.77 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.64 7.87 -2.39 -0.02 0.62 16 33 H 0.08 0.69 7.79 -2.39 -0.02 0.68 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 0.90 8.09 -2.39 -0.02 0.88 16 38 H 0.10 0.99 7.87 -2.39 -0.02 0.97 16 39 H 0.41 4.46 6.87 -92.70 -0.64 3.82 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 0.91 7.60 -2.39 -0.02 0.89 16 44 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 45 H 0.06 1.11 7.45 -2.39 -0.02 1.09 16 46 H 0.34 10.43 8.17 -89.69 -0.73 9.70 16 47 H 0.11 2.85 8.05 -2.39 -0.02 2.84 16 48 H 0.07 1.78 7.43 -2.38 -0.02 1.76 16 49 H 0.40 18.54 7.90 -92.71 -0.73 17.81 16 50 H 0.28 13.66 8.31 -92.70 -0.77 12.89 16 51 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -74.95 416.95 -0.31 -75.26 By element: Atomic # 1 Polarization: 41.30 SS G_CDS: -1.17 Total: 40.13 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 5.98 Total: 13.44 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -6.12 Total: -113.00 kcal Atomic # 8 Polarization: -59.15 SS G_CDS: -1.03 Total: -60.18 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -74.95 -0.31 -75.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567159854.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.015 kcal (2) G-P(sol) polarization free energy of solvation -74.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds