Wall clock time and date at job start Wed Apr 1 2020 00:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 O 1.42898 * 109.47173 * 119.99658 * 2 1 3 5 5 C 1.42906 * 114.00125 * 150.00115 * 4 2 1 6 6 C 1.50696 * 109.47064 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00450 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99817 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99808 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.47565 * 325.00556 * 9 8 6 11 11 C 1.52997 * 109.46953 * 85.00516 * 9 8 6 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46626 * 299.99539 * 12 11 9 14 14 C 1.52997 * 109.46991 * 60.00378 * 13 12 11 15 15 H 1.09000 * 109.47611 * 59.99933 * 14 13 12 16 16 N 1.46905 * 109.47252 * 179.97438 * 14 13 12 17 17 C 1.46897 * 111.00157 * 275.00117 * 16 14 13 18 18 C 1.50704 * 109.47207 * 179.97438 * 17 16 14 19 19 O 1.21295 * 119.99831 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99953 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99765 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00018 * 0.02562 * 21 20 18 23 23 C 1.38946 * 119.99881 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00058 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00020 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47278 * 90.00011 * 25 23 21 27 27 H 1.48505 * 109.47309 * 210.00009 * 25 23 21 28 28 H 1.48498 * 109.47417 * 329.99777 * 25 23 21 29 29 C 1.52996 * 109.47131 * 299.99311 * 14 13 12 30 30 H 1.09005 * 109.47559 * 300.00316 * 1 2 3 31 31 H 1.09005 * 109.47059 * 60.00207 * 1 2 3 32 32 H 1.09000 * 109.47386 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47124 * 239.99577 * 2 1 3 34 34 H 1.09000 * 109.47446 * 59.99774 * 3 2 1 35 35 H 1.09000 * 109.47235 * 180.02562 * 3 2 1 36 36 H 1.09005 * 109.46964 * 299.99852 * 3 2 1 37 37 H 1.08989 * 109.46986 * 59.99766 * 5 4 2 38 38 H 1.09006 * 109.46682 * 300.00077 * 5 4 2 39 39 H 0.97000 * 119.99910 * 0.02562 * 8 6 5 40 40 H 1.09001 * 109.47502 * 60.00124 * 11 9 8 41 41 H 1.09001 * 109.47289 * 299.99920 * 11 9 8 42 42 H 1.08993 * 109.46955 * 60.00011 * 12 11 9 43 43 H 1.09000 * 109.47050 * 179.97438 * 12 11 9 44 44 H 1.09002 * 109.46719 * 180.02562 * 13 12 11 45 45 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 46 46 H 1.00898 * 111.00144 * 151.03998 * 16 14 13 47 47 H 1.09000 * 109.47241 * 299.99901 * 17 16 14 48 48 H 1.09006 * 109.47335 * 59.99935 * 17 16 14 49 49 H 0.97000 * 120.00182 * 0.02562 * 20 18 17 50 50 H 0.97005 * 119.99942 * 179.97438 * 24 23 21 51 51 H 1.08996 * 109.47452 * 300.00000 * 29 14 13 52 52 H 1.09000 * 109.47054 * 180.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9887 6 6 3.6693 -1.9987 2.2746 7 8 2.9492 -1.9284 3.2480 8 7 4.8303 -2.6799 2.3431 9 6 5.2226 -3.3349 3.5934 10 1 4.8908 -2.7324 4.4389 11 6 4.5756 -4.7193 3.6686 12 6 4.9858 -5.4037 4.9742 13 6 6.5082 -5.5492 5.0170 14 6 7.1552 -4.1648 4.9418 15 1 6.8239 -3.5624 5.7876 16 7 8.6170 -4.3045 4.9836 17 6 9.0988 -4.3849 6.3689 18 6 10.5991 -4.5279 6.3716 19 8 11.2071 -4.5592 5.3225 20 7 11.2651 -4.6200 7.5396 21 6 12.6299 -4.7506 7.5419 22 1 13.1712 -4.7792 6.6078 23 6 13.3166 -4.8460 8.7460 24 7 14.6247 -4.9707 8.7483 25 14 12.3802 -4.7972 10.3617 26 1 11.9994 -6.1775 10.7550 27 1 13.2413 -4.2020 11.4151 28 1 11.1556 -3.9730 10.1994 29 6 6.7450 -3.4805 3.6363 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6766 1.9564 0.8899 35 1 3.1299 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 4.0199 -0.5874 0.7125 38 1 3.1808 -2.0707 0.1987 39 1 5.4064 -2.7358 1.5647 40 1 4.9074 -5.3219 2.8231 41 1 3.4910 -4.6156 3.6375 42 1 4.6543 -4.8013 5.8198 43 1 4.5245 -6.3898 5.0280 44 1 6.8005 -6.0372 5.9469 45 1 6.8397 -6.1516 4.1713 46 1 9.0667 -3.5497 4.4875 47 1 8.8190 -3.4776 6.9042 48 1 8.6510 -5.2491 6.8598 49 1 10.7789 -4.5946 8.3785 50 1 15.1042 -5.0370 9.5890 51 1 7.0765 -4.0828 2.7905 52 1 7.2063 -2.4944 3.5825 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567159855.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:53 Heat of formation + Delta-G solvation = -131.804995 kcal Electronic energy + Delta-G solvation = -29354.767081 eV Core-core repulsion = 25160.663418 eV Total energy + Delta-G solvation = -4194.103663 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.45509 -39.15302 -38.45502 -37.90759 -35.29236 -34.05797 -33.57283 -33.21582 -31.66747 -30.51969 -29.58529 -27.88622 -27.39361 -26.33226 -23.86727 -22.75189 -21.95909 -21.78884 -20.74874 -19.97326 -19.35946 -18.34442 -17.55911 -17.49888 -16.57776 -16.35385 -15.78212 -15.40516 -15.31318 -15.13920 -14.92001 -14.69537 -14.48424 -14.19659 -14.03538 -13.83631 -13.35271 -13.22790 -13.18806 -13.03370 -12.68740 -12.66031 -12.53099 -12.44134 -12.19672 -12.10230 -11.92102 -11.87254 -11.49145 -11.36620 -11.23085 -11.16134 -10.73979 -10.68331 -10.66062 -10.58723 -10.15530 -10.00203 -9.97249 -9.57216 -9.36595 -8.57858 -8.20265 -8.15086 -6.31238 -3.82668 2.28705 2.39354 3.02863 3.07319 3.15381 3.49462 3.74133 3.99201 4.10485 4.24475 4.43710 4.48789 4.52596 4.61436 4.67079 4.68069 4.71339 4.74988 4.86746 4.96882 5.11550 5.13114 5.20744 5.21754 5.23602 5.28307 5.30221 5.30699 5.35359 5.41507 5.61218 5.69066 5.69671 5.73087 5.80692 5.84094 5.86283 5.92385 5.95011 6.04091 6.12579 6.18467 6.33485 6.63257 7.11788 7.15123 7.56908 7.58946 7.90035 8.14471 8.59804 8.94904 9.42524 9.82802 10.81879 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022834 B = 0.001613 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.968111 B =17353.264432 C =17749.650632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.177 4.177 4 O -0.358 6.358 5 C 0.043 3.957 6 C 0.514 3.486 7 O -0.517 6.517 8 N -0.726 5.726 9 C 0.151 3.849 10 H 0.088 0.912 11 C -0.128 4.128 12 C -0.116 4.116 13 C -0.110 4.110 14 C 0.093 3.907 15 H 0.044 0.956 16 N -0.664 5.664 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.591 5.591 21 C -0.306 4.306 22 H 0.119 0.881 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 C -0.127 4.127 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.401 0.599 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.351 0.649 47 H 0.044 0.956 48 H 0.087 0.913 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.080 0.920 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.668 7.358 -16.126 32.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.276 6.276 5 C -0.037 4.037 6 C 0.299 3.701 7 O -0.391 6.391 8 N -0.379 5.379 9 C 0.047 3.953 10 H 0.107 0.893 11 C -0.167 4.167 12 C -0.155 4.155 13 C -0.149 4.149 14 C -0.018 4.018 15 H 0.062 0.938 16 N -0.296 5.296 17 C -0.085 4.085 18 C 0.236 3.764 19 O -0.447 6.447 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.166 4.166 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.235 0.765 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.171 0.829 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.099 0.901 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -27.687 6.711 -15.914 32.633 hybrid contribution -0.119 0.937 1.068 1.426 sum -27.806 7.648 -14.846 32.436 Atomic orbital electron populations 1.21857 0.93203 1.02939 1.02715 1.22184 0.95411 0.92523 0.87753 1.22321 1.01549 0.96676 1.02902 1.88074 1.34501 1.69704 1.35328 1.22238 0.88406 0.97189 0.95841 1.20255 0.81347 0.78777 0.89767 1.90744 1.51425 1.59533 1.37445 1.45983 1.22171 1.54351 1.15370 1.20949 0.94075 0.93670 0.86652 0.89350 1.21924 1.00725 0.95361 0.98651 1.21492 0.96162 1.00653 0.97165 1.21591 0.93505 0.96695 1.03065 1.21430 0.88454 0.96050 0.95851 0.93763 1.60097 1.03265 1.52563 1.13705 1.21759 0.95139 1.01174 0.90408 1.19716 0.88158 0.84010 0.84526 1.90561 1.69059 1.54042 1.31056 1.42211 1.08081 1.66517 1.06210 1.19434 0.79932 1.47409 0.96649 0.86291 1.25031 0.95514 0.97601 0.97959 1.69621 1.06168 1.48904 1.27450 0.86674 0.79815 0.78892 0.84018 1.19579 1.20190 1.19527 1.21959 0.93818 1.01341 0.99448 0.91547 0.91075 0.91865 0.92017 0.91508 0.92454 0.91441 0.90309 0.90275 0.76523 0.91563 0.91575 0.91878 0.91430 0.91656 0.90909 0.82928 0.93762 0.89457 0.79684 0.91620 0.90097 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.56 37.15 0.36 -0.47 16 2 C 0.08 0.49 3.34 -26.74 -0.09 0.40 16 3 C -0.18 -0.95 9.53 37.16 0.35 -0.59 16 4 O -0.36 -3.40 9.52 -55.14 -0.52 -3.92 16 5 C 0.04 0.30 6.23 36.00 0.22 0.52 16 6 C 0.51 5.06 7.87 -10.98 -0.09 4.98 16 7 O -0.52 -7.58 16.16 -14.35 -0.23 -7.81 16 8 N -0.73 -5.46 5.08 -53.81 -0.27 -5.73 16 9 C 0.15 1.36 2.45 -67.93 -0.17 1.19 16 10 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 11 C -0.13 -1.14 5.49 -26.73 -0.15 -1.29 16 12 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 13 C -0.11 -1.16 5.42 -26.73 -0.15 -1.31 16 14 C 0.09 1.03 2.49 -67.71 -0.17 0.86 16 15 H 0.04 0.50 7.80 -51.93 -0.40 0.09 16 16 N -0.66 -9.80 5.93 -107.99 -0.64 -10.44 16 17 C 0.05 0.78 5.96 -4.98 -0.03 0.75 16 18 C 0.45 10.15 7.82 -10.99 -0.09 10.07 16 19 O -0.57 -15.06 15.78 5.54 0.09 -14.97 16 20 N -0.59 -14.06 5.09 -10.96 -0.06 -14.12 16 21 C -0.31 -8.65 10.16 -14.93 -0.15 -8.81 16 22 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -25.76 13.96 55.50 0.77 -24.98 16 25 Si 0.88 19.40 27.74 -169.99 -4.71 14.69 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 29 C -0.13 -1.15 4.66 -26.73 -0.12 -1.27 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.27 7.79 -51.93 -0.40 -0.13 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.29 7.87 -51.93 -0.41 -0.12 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.37 7.87 -51.94 -0.41 -0.03 16 38 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 39 H 0.40 1.85 8.60 -40.82 -0.35 1.49 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.73 7.45 -51.93 -0.39 0.34 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.35 5.34 8.05 -39.29 -0.32 5.02 16 47 H 0.04 0.64 8.05 -51.93 -0.42 0.23 16 48 H 0.09 1.29 7.44 -51.93 -0.39 0.91 16 49 H 0.37 7.75 5.76 -40.82 -0.24 7.52 16 50 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 51 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 52 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 LS Contribution 418.13 15.07 6.30 6.30 Total: -1.00 -35.90 418.13 -8.96 -44.86 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -9.16 Total: 11.24 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -0.52 Total: 4.88 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.20 Total: -55.27 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.67 Total: -26.70 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.90 -8.96 -44.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567159855.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.945 kcal (2) G-P(sol) polarization free energy of solvation -35.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds