Wall clock time and date at job start Wed Apr 1 2020 00:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47019 * 2 1 4 4 O 1.42896 * 109.47239 * 120.00142 * 2 1 3 5 5 C 1.42904 * 113.99769 * 90.00252 * 4 2 1 6 6 C 1.50703 * 109.46923 * 179.97438 * 5 4 2 7 7 O 1.21285 * 120.00148 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00048 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99951 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47459 * 325.00158 * 9 8 6 11 11 C 1.52997 * 109.47194 * 85.00164 * 9 8 6 12 12 C 1.53002 * 109.47415 * 59.99942 * 11 9 8 13 13 C 1.52996 * 109.46972 * 59.99860 * 12 11 9 14 14 C 1.52997 * 109.47165 * 300.00293 * 13 12 11 15 15 H 1.09000 * 109.47140 * 299.99954 * 14 13 12 16 16 N 1.46906 * 109.47243 * 180.02562 * 14 13 12 17 17 C 1.46898 * 111.00158 * 84.99596 * 16 14 13 18 18 C 1.50699 * 109.47102 * 180.02562 * 17 16 14 19 19 O 1.21297 * 119.99919 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00212 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00126 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00029 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99694 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99601 * 179.97438 * 23 21 20 25 25 Si 1.86792 * 120.00215 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47362 * 90.00239 * 25 23 21 27 27 H 1.48505 * 109.47305 * 209.99910 * 25 23 21 28 28 H 1.48493 * 109.47492 * 329.99757 * 25 23 21 29 29 C 1.52999 * 109.47592 * 60.00300 * 14 13 12 30 30 H 1.09003 * 109.46942 * 59.99602 * 1 2 3 31 31 H 1.08998 * 109.46665 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46805 * 299.99694 * 1 2 3 33 33 H 1.08999 * 109.47311 * 240.00379 * 2 1 3 34 34 H 1.09000 * 109.47207 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47492 * 300.00308 * 3 2 1 36 36 H 1.09001 * 109.47082 * 60.00476 * 3 2 1 37 37 H 1.08993 * 109.47165 * 60.00244 * 5 4 2 38 38 H 1.08995 * 109.46941 * 299.99693 * 5 4 2 39 39 H 0.96995 * 119.99605 * 0.02562 * 8 6 5 40 40 H 1.09000 * 109.47140 * 179.97438 * 11 9 8 41 41 H 1.09001 * 109.47230 * 299.99110 * 11 9 8 42 42 H 1.08992 * 109.46974 * 180.02562 * 12 11 9 43 43 H 1.08996 * 109.46550 * 300.00288 * 12 11 9 44 44 H 1.09000 * 109.47054 * 60.00300 * 13 12 11 45 45 H 1.09001 * 109.46997 * 180.02562 * 13 12 11 46 46 H 1.00908 * 110.99740 * 321.04558 * 16 14 13 47 47 H 1.08995 * 109.47229 * 300.00220 * 17 16 14 48 48 H 1.08994 * 109.47007 * 60.00253 * 17 16 14 49 49 H 0.96998 * 119.99829 * 0.02562 * 20 18 17 50 50 H 0.97000 * 120.00128 * 180.02562 * 24 23 21 51 51 H 1.08993 * 109.47839 * 180.02562 * 29 14 13 52 52 H 1.09000 * 109.47160 * 59.99666 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2001 -2.0782 0.9884 6 6 2.7015 -2.6833 2.2744 7 8 2.8762 -1.9808 3.2475 8 7 2.9559 -4.0051 2.3430 9 6 3.4427 -4.5933 3.5932 10 1 4.0973 -3.8830 4.0984 11 6 2.2542 -4.9241 4.4981 12 6 1.3353 -5.9211 3.7892 13 6 2.1136 -7.2018 3.4811 14 6 3.3022 -6.8711 2.5762 15 1 2.9399 -6.4334 1.6460 16 7 4.0491 -8.1009 2.2798 17 6 3.4591 -8.8131 1.1385 18 6 4.2499 -10.0665 0.8654 19 8 5.2108 -10.3394 1.5535 20 7 3.8895 -10.8843 -0.1435 21 6 4.6086 -12.0248 -0.3916 22 1 5.4636 -12.2682 0.2216 23 6 4.2372 -12.8676 -1.4321 24 7 4.9268 -13.9606 -1.6702 25 14 2.7588 -12.4462 -2.4931 26 1 3.1971 -11.6218 -3.6480 27 1 2.1319 -13.6981 -2.9883 28 1 1.7720 -11.6839 -1.6869 29 6 4.2211 -5.8741 3.2851 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.9320 -2.2466 0.1985 38 1 1.2539 -2.5433 0.7123 39 1 2.8165 -4.5668 1.5646 40 1 2.6164 -5.3622 5.4281 41 1 1.6998 -4.0116 4.7177 42 1 0.4884 -6.1563 4.4337 43 1 0.9731 -5.4834 2.8590 44 1 2.4759 -7.6395 4.4113 45 1 1.4591 -7.9120 2.9756 46 1 4.0994 -8.6979 3.0918 47 1 2.4274 -9.0779 1.3695 48 1 3.4810 -8.1703 0.2585 49 1 3.1213 -10.6658 -0.6940 50 1 4.6679 -14.5488 -2.3968 51 1 5.0675 -5.6381 2.6403 52 1 4.5833 -6.3118 4.2153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567159857.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:01 Heat of formation + Delta-G solvation = -129.434298 kcal Electronic energy + Delta-G solvation = -29972.597183 eV Core-core repulsion = 25778.596321 eV Total energy + Delta-G solvation = -4194.000862 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.59999 -39.18849 -38.45275 -37.87112 -35.22697 -33.98509 -33.37946 -33.11410 -31.69994 -30.62508 -29.66125 -27.91893 -27.41759 -26.32856 -23.86047 -22.78243 -21.85298 -21.75172 -21.42809 -19.63864 -19.29566 -18.37679 -17.63824 -17.37081 -16.57962 -16.25395 -15.78423 -15.57989 -15.26804 -15.07325 -14.90014 -14.82654 -14.45122 -14.17703 -13.84059 -13.71400 -13.37775 -13.23024 -13.05279 -12.91835 -12.65626 -12.63564 -12.49378 -12.44266 -12.38025 -12.32627 -11.96647 -11.88711 -11.84566 -11.39012 -11.20836 -11.17423 -10.99153 -10.65821 -10.63619 -10.42264 -10.10449 -10.00754 -9.99957 -9.60836 -9.31275 -8.62865 -8.22571 -8.15307 -6.34222 -3.85783 2.35364 2.48554 2.98288 3.03026 3.11616 3.57871 3.69987 3.95856 4.06856 4.32093 4.47301 4.49806 4.53683 4.57387 4.67646 4.71287 4.73255 4.79986 4.85389 4.92960 4.98719 5.14745 5.15816 5.18345 5.26094 5.29716 5.34650 5.36492 5.40051 5.41792 5.51355 5.59801 5.73100 5.73541 5.75719 5.77557 5.84824 5.85422 5.90205 5.99583 6.04870 6.14701 6.28402 6.68755 7.06370 7.21616 7.52013 7.55078 7.96385 8.11325 8.56301 8.91809 9.39009 9.79137 10.78892 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.002086 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.012372 B =13416.439504 C =14880.756879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 C -0.150 4.150 4 O -0.357 6.357 5 C 0.042 3.958 6 C 0.514 3.486 7 O -0.520 6.520 8 N -0.721 5.721 9 C 0.150 3.850 10 H 0.091 0.909 11 C -0.131 4.131 12 C -0.112 4.112 13 C -0.154 4.154 14 C 0.088 3.912 15 H 0.071 0.929 16 N -0.663 5.663 17 C 0.048 3.952 18 C 0.449 3.551 19 O -0.564 6.564 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C -0.115 4.115 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.400 0.600 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.353 0.647 47 H 0.044 0.956 48 H 0.086 0.914 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.079 0.921 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.074 25.993 3.682 28.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.276 6.276 5 C -0.038 4.038 6 C 0.299 3.701 7 O -0.395 6.395 8 N -0.376 5.376 9 C 0.045 3.955 10 H 0.109 0.891 11 C -0.170 4.170 12 C -0.150 4.150 13 C -0.193 4.193 14 C -0.022 4.022 15 H 0.089 0.911 16 N -0.294 5.294 17 C -0.085 4.085 18 C 0.234 3.766 19 O -0.446 6.446 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.153 4.153 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.235 0.765 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.173 0.827 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.098 0.902 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.719 26.524 4.517 28.963 hybrid contribution -2.245 -0.774 -1.316 2.715 sum -12.964 25.750 3.201 29.007 Atomic orbital electron populations 1.22316 0.95799 1.02433 1.02838 1.22187 0.93809 0.94093 0.87846 1.21853 1.02001 0.94181 1.02650 1.88065 1.86604 1.17633 1.35287 1.22252 1.01238 0.84290 0.96029 1.20237 0.77934 0.82246 0.89650 1.90730 1.50570 1.60581 1.37604 1.46050 1.68330 1.07918 1.15305 1.21000 0.95267 0.94798 0.84391 0.89132 1.21940 0.96912 0.99513 0.98620 1.21418 0.97907 0.95160 1.00512 1.22363 0.98199 0.97926 1.00787 1.21566 0.91607 0.91735 0.97314 0.91063 1.60184 1.52456 1.07355 1.09394 1.21732 0.96010 0.95420 0.95320 1.19721 0.87599 0.85511 0.83727 1.90573 1.29362 1.74831 1.49816 1.42207 1.28617 1.22452 1.29725 1.19432 1.11842 0.96885 1.15247 0.86281 1.25050 0.98022 0.95720 0.97430 1.69622 1.39376 1.12232 1.30822 0.86663 0.82593 0.78845 0.81201 1.19608 1.20189 1.19581 1.21803 0.98194 0.93063 1.02263 0.91455 0.92491 0.91571 0.91958 0.91828 0.91093 0.91603 0.90199 0.90421 0.76483 0.90785 0.91467 0.92028 0.92189 0.91305 0.91857 0.82711 0.93783 0.89630 0.79740 0.91598 0.90210 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 9.53 37.16 0.35 -0.67 16 2 C 0.08 0.53 3.34 -26.73 -0.09 0.44 16 3 C -0.15 -0.92 9.56 37.16 0.36 -0.56 16 4 O -0.36 -3.58 9.52 -55.14 -0.52 -4.11 16 5 C 0.04 0.32 6.23 36.01 0.22 0.55 16 6 C 0.51 5.28 7.87 -10.98 -0.09 5.19 16 7 O -0.52 -7.65 16.16 -14.36 -0.23 -7.88 16 8 N -0.72 -5.84 4.23 -53.80 -0.23 -6.06 16 9 C 0.15 1.33 2.78 -67.93 -0.19 1.14 16 10 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 11 C -0.13 -1.12 5.60 -26.73 -0.15 -1.27 16 12 C -0.11 -0.88 5.77 -26.73 -0.15 -1.04 16 13 C -0.15 -1.36 5.17 -26.73 -0.14 -1.50 16 14 C 0.09 0.86 2.29 -67.71 -0.16 0.71 16 15 H 0.07 0.62 6.16 -51.93 -0.32 0.30 16 16 N -0.66 -9.19 5.87 -108.00 -0.63 -9.82 16 17 C 0.05 0.73 5.96 -4.98 -0.03 0.70 16 18 C 0.45 9.82 7.82 -10.99 -0.09 9.73 16 19 O -0.56 -14.79 15.78 5.54 0.09 -14.71 16 20 N -0.59 -13.67 5.09 -10.96 -0.06 -13.73 16 21 C -0.31 -8.51 10.16 -14.93 -0.15 -8.66 16 22 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 23 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -25.44 13.96 55.50 0.77 -24.66 16 25 Si 0.88 18.94 27.74 -169.99 -4.71 14.22 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 27 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 28 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 29 C -0.11 -1.05 5.22 -26.73 -0.14 -1.19 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.31 7.87 -51.93 -0.41 -0.09 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.33 7.79 -51.93 -0.40 -0.07 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 38 H 0.08 0.43 7.87 -51.93 -0.41 0.02 16 39 H 0.40 2.47 6.87 -40.82 -0.28 2.19 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.46 7.60 -51.93 -0.39 0.06 16 44 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 45 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 46 H 0.35 5.22 8.17 -39.29 -0.32 4.90 16 47 H 0.04 0.59 7.43 -51.93 -0.39 0.20 16 48 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 49 H 0.37 7.46 5.76 -40.82 -0.24 7.22 16 50 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 51 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 52 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 413.83 15.07 6.24 6.24 Total: -1.00 -35.14 413.83 -8.81 -43.94 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -8.98 Total: 11.99 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -0.53 Total: 4.58 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.14 Total: -54.28 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.67 Total: -26.69 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.71 Total: 14.22 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.14 -8.81 -43.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567159857.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.493 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds