Wall clock time and date at job start Wed Apr 1 2020 00:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47019 * 2 1 4 4 O 1.42896 * 109.47239 * 120.00142 * 2 1 3 5 5 C 1.42904 * 113.99769 * 90.00252 * 4 2 1 6 6 C 1.50703 * 109.46923 * 179.97438 * 5 4 2 7 7 O 1.21285 * 120.00148 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00048 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99951 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47459 * 325.00158 * 9 8 6 11 11 C 1.52997 * 109.47194 * 85.00164 * 9 8 6 12 12 C 1.53002 * 109.47415 * 59.99942 * 11 9 8 13 13 C 1.52996 * 109.46972 * 59.99860 * 12 11 9 14 14 C 1.52997 * 109.47165 * 300.00293 * 13 12 11 15 15 H 1.09000 * 109.47140 * 299.99954 * 14 13 12 16 16 N 1.46906 * 109.47243 * 180.02562 * 14 13 12 17 17 C 1.46898 * 111.00158 * 84.99596 * 16 14 13 18 18 C 1.50699 * 109.47102 * 180.02562 * 17 16 14 19 19 O 1.21297 * 119.99919 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00212 * 179.97438 * 18 17 16 21 21 C 1.37097 * 120.00126 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00029 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99694 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99601 * 179.97438 * 23 21 20 25 25 Si 1.86792 * 120.00215 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47362 * 90.00239 * 25 23 21 27 27 H 1.48505 * 109.47305 * 209.99910 * 25 23 21 28 28 H 1.48493 * 109.47492 * 329.99757 * 25 23 21 29 29 C 1.52999 * 109.47592 * 60.00300 * 14 13 12 30 30 H 1.09003 * 109.46942 * 59.99602 * 1 2 3 31 31 H 1.08998 * 109.46665 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46805 * 299.99694 * 1 2 3 33 33 H 1.08999 * 109.47311 * 240.00379 * 2 1 3 34 34 H 1.09000 * 109.47207 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47492 * 300.00308 * 3 2 1 36 36 H 1.09001 * 109.47082 * 60.00476 * 3 2 1 37 37 H 1.08993 * 109.47165 * 60.00244 * 5 4 2 38 38 H 1.08995 * 109.46941 * 299.99693 * 5 4 2 39 39 H 0.96995 * 119.99605 * 0.02562 * 8 6 5 40 40 H 1.09000 * 109.47140 * 179.97438 * 11 9 8 41 41 H 1.09001 * 109.47230 * 299.99110 * 11 9 8 42 42 H 1.08992 * 109.46974 * 180.02562 * 12 11 9 43 43 H 1.08996 * 109.46550 * 300.00288 * 12 11 9 44 44 H 1.09000 * 109.47054 * 60.00300 * 13 12 11 45 45 H 1.09001 * 109.46997 * 180.02562 * 13 12 11 46 46 H 1.00908 * 110.99740 * 321.04558 * 16 14 13 47 47 H 1.08995 * 109.47229 * 300.00220 * 17 16 14 48 48 H 1.08994 * 109.47007 * 60.00253 * 17 16 14 49 49 H 0.96998 * 119.99829 * 0.02562 * 20 18 17 50 50 H 0.97000 * 120.00128 * 180.02562 * 24 23 21 51 51 H 1.08993 * 109.47839 * 180.02562 * 29 14 13 52 52 H 1.09000 * 109.47160 * 59.99666 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2001 -2.0782 0.9884 6 6 2.7015 -2.6833 2.2744 7 8 2.8762 -1.9808 3.2475 8 7 2.9559 -4.0051 2.3430 9 6 3.4427 -4.5933 3.5932 10 1 4.0973 -3.8830 4.0984 11 6 2.2542 -4.9241 4.4981 12 6 1.3353 -5.9211 3.7892 13 6 2.1136 -7.2018 3.4811 14 6 3.3022 -6.8711 2.5762 15 1 2.9399 -6.4334 1.6460 16 7 4.0491 -8.1009 2.2798 17 6 3.4591 -8.8131 1.1385 18 6 4.2499 -10.0665 0.8654 19 8 5.2108 -10.3394 1.5535 20 7 3.8895 -10.8843 -0.1435 21 6 4.6086 -12.0248 -0.3916 22 1 5.4636 -12.2682 0.2216 23 6 4.2372 -12.8676 -1.4321 24 7 4.9268 -13.9606 -1.6702 25 14 2.7588 -12.4462 -2.4931 26 1 3.1971 -11.6218 -3.6480 27 1 2.1319 -13.6981 -2.9883 28 1 1.7720 -11.6839 -1.6869 29 6 4.2211 -5.8741 3.2851 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 2.9320 -2.2466 0.1985 38 1 1.2539 -2.5433 0.7123 39 1 2.8165 -4.5668 1.5646 40 1 2.6164 -5.3622 5.4281 41 1 1.6998 -4.0116 4.7177 42 1 0.4884 -6.1563 4.4337 43 1 0.9731 -5.4834 2.8590 44 1 2.4759 -7.6395 4.4113 45 1 1.4591 -7.9120 2.9756 46 1 4.0994 -8.6979 3.0918 47 1 2.4274 -9.0779 1.3695 48 1 3.4810 -8.1703 0.2585 49 1 3.1213 -10.6658 -0.6940 50 1 4.6679 -14.5488 -2.3968 51 1 5.0675 -5.6381 2.6403 52 1 4.5833 -6.3118 4.2153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567159857.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:00 Heat of formation + Delta-G solvation = -156.463666 kcal Electronic energy + Delta-G solvation = -29973.769264 eV Core-core repulsion = 25778.596321 eV Total energy + Delta-G solvation = -4195.172943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.37362 -40.34251 -39.64005 -38.70387 -36.36939 -35.77849 -34.21058 -33.72655 -33.64620 -31.38710 -30.62137 -28.46999 -27.93423 -27.81941 -25.46313 -23.49239 -22.65289 -22.25760 -22.16859 -21.28225 -20.45079 -20.02421 -18.35745 -17.98172 -17.79483 -17.17634 -16.90703 -16.49323 -16.47399 -16.21637 -15.92532 -15.59756 -15.42807 -15.16183 -15.03200 -14.72765 -14.53174 -14.33976 -14.12076 -13.84171 -13.77123 -13.50288 -13.30950 -13.20764 -13.16778 -13.04777 -13.01501 -12.87868 -12.79921 -12.39493 -12.34653 -12.14441 -11.96748 -11.70865 -11.63178 -11.49797 -11.40425 -11.19154 -10.82493 -10.62597 -10.40725 -10.22954 -10.06960 -9.22010 -8.39613 -6.00655 1.31263 1.37619 1.46409 1.60331 1.85889 1.98808 2.24873 2.73372 3.02786 3.16869 3.38495 3.71760 3.78688 3.81289 4.01575 4.04010 4.11551 4.17516 4.19935 4.22250 4.23226 4.29961 4.33978 4.41166 4.47127 4.56550 4.61436 4.65236 4.72974 4.75995 4.83205 4.86112 4.92097 4.95069 5.07420 5.11549 5.15749 5.28261 5.29781 5.33719 5.35558 5.39633 5.54894 5.56849 5.94027 6.12505 6.17812 6.42071 6.57676 6.61784 6.90427 7.25797 7.42246 7.99630 8.78099 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.002086 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.012372 B =13416.439504 C =14880.756879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.072 3.928 3 C -0.151 4.151 4 O -0.393 6.393 5 C 0.042 3.958 6 C 0.511 3.489 7 O -0.574 6.574 8 N -0.707 5.707 9 C 0.156 3.844 10 H 0.072 0.928 11 C -0.127 4.127 12 C -0.104 4.104 13 C -0.148 4.148 14 C 0.093 3.907 15 H 0.093 0.907 16 N -0.681 5.681 17 C 0.063 3.937 18 C 0.447 3.553 19 O -0.616 6.616 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.053 0.947 23 C -0.018 4.018 24 N -0.936 5.936 25 Si 0.967 3.033 26 H -0.256 1.256 27 H -0.278 1.278 28 H -0.228 1.228 29 C -0.107 4.107 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.413 0.587 40 H 0.076 0.924 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.344 0.656 47 H 0.077 0.923 48 H 0.118 0.882 49 H 0.390 0.610 50 H 0.278 0.722 51 H 0.070 0.930 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.527 27.664 1.486 31.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 C -0.208 4.208 4 O -0.312 6.312 5 C -0.037 4.037 6 C 0.298 3.702 7 O -0.452 6.452 8 N -0.362 5.362 9 C 0.051 3.949 10 H 0.090 0.910 11 C -0.166 4.166 12 C -0.142 4.142 13 C -0.187 4.187 14 C -0.016 4.016 15 H 0.111 0.889 16 N -0.312 5.312 17 C -0.069 4.069 18 C 0.235 3.765 19 O -0.500 6.500 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.071 0.929 23 C -0.217 4.217 24 N -0.577 5.577 25 Si 0.787 3.213 26 H -0.181 1.181 27 H -0.203 1.203 28 H -0.151 1.151 29 C -0.145 4.145 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.251 0.749 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.163 0.837 47 H 0.095 0.905 48 H 0.136 0.864 49 H 0.226 0.774 50 H 0.088 0.912 51 H 0.089 0.911 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.192 28.206 2.307 31.659 hybrid contribution -1.025 -1.295 -0.521 1.732 sum -15.217 26.911 1.786 30.967 Atomic orbital electron populations 1.22301 0.95113 1.02782 1.02927 1.22397 0.94398 0.94106 0.87614 1.21892 1.01542 0.94327 1.03023 1.88032 1.87079 1.18919 1.37213 1.22395 1.03125 0.83474 0.94741 1.20821 0.77011 0.82374 0.90031 1.90710 1.53041 1.61837 1.39636 1.45929 1.67265 1.07577 1.15426 1.20847 0.95188 0.94070 0.84819 0.91013 1.21883 0.96658 0.99158 0.98861 1.21362 0.97592 0.94300 1.00967 1.22289 0.97721 0.98317 1.00341 1.21621 0.91551 0.89912 0.98559 0.88923 1.60175 1.53933 1.08190 1.08860 1.21672 0.95927 0.92249 0.97091 1.21103 0.86918 0.86680 0.81811 1.90555 1.31875 1.76334 1.51277 1.42026 1.29045 1.21400 1.30817 1.18997 1.11522 0.99650 1.15611 0.92873 1.26165 1.02070 0.94817 0.98603 1.69814 1.42026 1.13875 1.31942 0.85337 0.77815 0.79184 0.78988 1.18092 1.20294 1.15137 1.21697 0.97887 0.92999 1.01928 0.89765 0.91995 0.93073 0.89981 0.92572 0.88974 0.92973 0.87753 0.87692 0.74908 0.90518 0.92912 0.91461 0.91166 0.91892 0.91425 0.83667 0.90517 0.86426 0.77420 0.91212 0.91090 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 9.53 71.98 0.69 -0.96 16 2 C 0.07 0.84 3.34 30.60 0.10 0.94 16 3 C -0.15 -1.68 9.56 71.98 0.69 -0.99 16 4 O -0.39 -7.39 9.52 -129.94 -1.24 -8.63 16 5 C 0.04 0.54 6.23 71.24 0.44 0.98 16 6 C 0.51 9.79 7.87 87.66 0.69 10.48 16 7 O -0.57 -17.03 16.16 15.99 0.26 -16.77 16 8 N -0.71 -9.87 4.23 -442.53 -1.87 -11.74 16 9 C 0.16 2.57 2.78 44.99 0.13 2.70 16 10 H 0.07 1.50 7.58 -2.39 -0.02 1.48 16 11 C -0.13 -1.98 5.60 30.59 0.17 -1.81 16 12 C -0.10 -1.33 5.77 30.59 0.18 -1.15 16 13 C -0.15 -2.14 5.17 30.59 0.16 -1.98 16 14 C 0.09 1.52 2.29 44.91 0.10 1.63 16 15 H 0.09 1.15 6.16 -2.39 -0.01 1.13 16 16 N -0.68 -17.26 5.87 -495.59 -2.91 -20.18 16 17 C 0.06 1.67 5.96 85.56 0.51 2.18 16 18 C 0.45 19.13 7.82 87.66 0.69 19.82 16 19 O -0.62 -33.21 15.78 -3.08 -0.05 -33.26 16 20 N -0.59 -26.69 5.09 -306.99 -1.56 -28.26 16 21 C -0.33 -18.89 10.16 84.04 0.85 -18.03 16 22 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 23 C -0.02 -0.99 5.50 84.93 0.47 -0.53 16 24 N -0.94 -55.84 13.96 21.66 0.30 -55.53 16 25 Si 0.97 37.41 27.74 68.60 1.90 39.32 16 26 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 27 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 28 H -0.23 -7.22 6.52 99.48 0.65 -6.57 16 29 C -0.11 -1.79 5.22 30.60 0.16 -1.63 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.52 7.87 -2.39 -0.02 0.50 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.61 7.79 -2.39 -0.02 0.59 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.10 0.80 8.08 -2.39 -0.02 0.78 16 38 H 0.11 0.75 7.87 -2.39 -0.02 0.73 16 39 H 0.41 3.53 6.87 -92.71 -0.64 2.90 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 0.78 7.60 -2.39 -0.02 0.76 16 44 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 45 H 0.07 0.97 7.45 -2.39 -0.02 0.96 16 46 H 0.34 9.79 8.17 -89.69 -0.73 9.05 16 47 H 0.08 1.62 7.43 -2.39 -0.02 1.61 16 48 H 0.12 2.47 8.05 -2.39 -0.02 2.45 16 49 H 0.39 14.27 5.76 -92.71 -0.53 13.74 16 50 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 51 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 52 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -84.18 413.83 -0.18 -84.36 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: -1.03 Total: 39.07 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 6.02 Total: 11.63 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -6.04 Total: -115.71 kcal Atomic # 8 Polarization: -57.64 SS G_CDS: -1.03 Total: -58.67 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 1.90 Total: 39.32 kcal Total: -84.18 -0.18 -84.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567159857.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.108 kcal (2) G-P(sol) polarization free energy of solvation -84.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds