Wall clock time and date at job start Wed Apr 1 2020 00:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47267 * 2 1 4 4 O 1.42896 * 109.47121 * 120.00235 * 2 1 3 5 5 C 1.42900 * 114.00039 * 149.99777 * 4 2 1 6 6 C 1.50702 * 109.47208 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99698 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00004 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99866 * 174.92909 * 8 6 5 10 10 C 1.52999 * 110.01635 * 65.02220 * 9 8 6 11 11 N 1.46898 * 109.47135 * 53.36222 * 10 9 8 12 12 C 1.46896 * 111.00230 * 185.10333 * 11 10 9 13 13 C 1.50697 * 109.47534 * 179.97438 * 12 11 10 14 14 O 1.21289 * 119.99858 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00267 * 179.97438 * 13 12 11 16 16 C 1.37097 * 120.00051 * 180.02562 * 15 13 12 17 17 H 1.07994 * 120.00276 * 359.97438 * 16 15 13 18 18 C 1.38955 * 119.99818 * 180.02562 * 16 15 13 19 19 N 1.31409 * 119.99842 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99737 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46612 * 90.00161 * 20 18 16 22 22 H 1.48497 * 109.46876 * 209.99794 * 20 18 16 23 23 H 1.48497 * 109.47100 * 330.00141 * 20 18 16 24 24 C 1.54269 * 110.06934 * 186.44241 * 9 8 6 25 25 C 1.54893 * 104.19558 * 95.69681 * 24 9 8 26 26 C 1.54888 * 102.74886 * 37.93842 * 25 24 9 27 27 C 1.53877 * 110.02947 * 303.63016 * 9 8 6 28 28 H 1.08999 * 109.46936 * 299.99881 * 1 2 3 29 29 H 1.09003 * 109.47053 * 59.99425 * 1 2 3 30 30 H 1.08996 * 109.47430 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46936 * 240.00118 * 2 1 3 32 32 H 1.09001 * 109.47143 * 59.99651 * 3 2 1 33 33 H 1.08998 * 109.47414 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47554 * 300.00268 * 3 2 1 35 35 H 1.09001 * 109.47096 * 60.00153 * 5 4 2 36 36 H 1.09001 * 109.47322 * 299.99913 * 5 4 2 37 37 H 0.96997 * 120.00213 * 354.92544 * 8 6 5 38 38 H 1.09003 * 109.46842 * 173.35519 * 10 9 8 39 39 H 1.08997 * 109.47408 * 293.35789 * 10 9 8 40 40 H 1.00900 * 111.00673 * 61.14413 * 11 10 9 41 41 H 1.09004 * 109.46594 * 299.99584 * 12 11 10 42 42 H 1.09000 * 109.47086 * 59.99180 * 12 11 10 43 43 H 0.97008 * 119.99805 * 359.97438 * 15 13 12 44 44 H 0.97002 * 119.99870 * 180.02562 * 19 18 16 45 45 H 1.08996 * 110.48458 * 214.37252 * 24 9 8 46 46 H 1.09000 * 110.48966 * 337.01585 * 24 9 8 47 47 H 1.08995 * 110.75374 * 279.62621 * 25 24 9 48 48 H 1.08996 * 110.75302 * 156.25621 * 25 24 9 49 49 H 1.09000 * 110.48919 * 203.38033 * 26 25 24 50 50 H 1.09004 * 110.48492 * 80.73744 * 26 25 24 51 51 H 1.09001 * 110.03087 * 359.95336 * 27 9 8 52 52 H 1.08997 * 110.02857 * 121.38460 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9885 6 6 3.6693 -1.9990 2.2744 7 8 2.9492 -1.9287 3.2478 8 7 4.8307 -2.6793 2.3431 9 6 5.2765 -3.2404 3.6209 10 6 4.3054 -4.3289 4.0822 11 7 4.1332 -5.3180 3.0098 12 6 3.1150 -6.3136 3.3704 13 6 2.9660 -7.3087 2.2486 14 8 3.6419 -7.1996 1.2474 15 7 2.0824 -8.3205 2.3582 16 6 1.9472 -9.2261 1.3378 17 1 2.5484 -9.1286 0.4460 18 6 1.0359 -10.2690 1.4507 19 7 0.3033 -10.3869 2.5352 20 14 0.8512 -11.5025 0.0601 21 1 1.7922 -12.6316 0.2719 22 1 -0.5417 -12.0168 0.0364 23 1 1.1564 -10.8398 -1.2333 24 6 6.6964 -3.8258 3.4754 25 6 7.6282 -2.6874 3.9601 26 6 6.8366 -2.0786 5.1441 27 6 5.3657 -2.1294 4.6819 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 4.0200 -0.5874 0.7124 36 1 3.1809 -2.0707 0.1985 37 1 5.3714 -2.7975 1.5465 38 1 4.7054 -4.8206 4.9691 39 1 3.3414 -3.8790 4.3198 40 1 5.0101 -5.7631 2.7841 41 1 3.4203 -6.8327 4.2789 42 1 2.1618 -5.8131 3.5407 43 1 1.5426 -8.4084 3.1594 44 1 -0.3326 -11.1151 2.6142 45 1 6.8118 -4.7076 4.1056 46 1 6.9032 -4.0706 2.4336 47 1 7.7759 -1.9478 3.1733 48 1 8.5833 -3.0882 4.2994 49 1 7.1458 -1.0483 5.3201 50 1 6.9747 -2.6783 6.0438 51 1 5.0781 -1.1727 4.2458 52 1 4.7172 -2.3658 5.5254 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567993136.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:18 Heat of formation + Delta-G solvation = -154.976101 kcal Electronic energy + Delta-G solvation = -30807.065002 eV Core-core repulsion = 26611.956564 eV Total energy + Delta-G solvation = -4195.108438 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.43602 -40.14489 -39.52766 -38.35965 -36.42466 -35.69946 -34.44213 -33.66969 -33.27757 -30.83147 -29.76249 -28.77545 -28.09539 -27.54242 -26.04782 -24.14081 -22.27502 -22.13576 -21.57485 -21.14153 -20.21391 -19.88396 -18.17109 -18.10577 -17.80130 -17.16064 -16.90795 -16.76305 -16.43798 -16.06342 -15.91409 -15.73394 -15.42585 -15.29364 -14.94379 -14.82162 -14.34754 -14.15443 -14.13702 -13.83432 -13.55678 -13.49904 -13.38434 -13.10824 -13.07293 -12.87616 -12.80460 -12.68150 -12.43329 -12.34760 -12.18454 -12.12225 -11.97062 -11.91978 -11.73347 -11.63277 -11.51496 -11.41743 -10.63433 -10.55500 -10.39217 -10.03582 -9.88303 -9.33000 -8.47708 -5.97078 1.37278 1.40699 1.54168 1.73708 1.94588 2.02283 2.27867 2.86445 3.06305 3.19095 3.47005 3.54774 3.69507 3.86814 3.93918 4.03992 4.10001 4.20582 4.25984 4.28337 4.30729 4.34456 4.38971 4.44272 4.52246 4.53377 4.63257 4.66994 4.74618 4.79136 4.81393 4.90594 4.90840 4.92578 4.92681 5.09839 5.13301 5.25514 5.26990 5.32254 5.32590 5.39216 5.48195 5.71577 5.84367 6.05366 6.19888 6.45777 6.57459 6.71728 7.10154 7.41055 7.53420 8.07598 8.69988 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008215 B = 0.002952 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3407.706126 B = 9483.437038 C =12106.846951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.069 3.931 3 C -0.169 4.169 4 O -0.392 6.392 5 C 0.044 3.956 6 C 0.514 3.486 7 O -0.566 6.566 8 N -0.692 5.692 9 C 0.183 3.817 10 C 0.054 3.946 11 N -0.665 5.665 12 C 0.065 3.935 13 C 0.442 3.558 14 O -0.616 6.616 15 N -0.574 5.574 16 C -0.333 4.333 17 H 0.082 0.918 18 C -0.015 4.015 19 N -0.923 5.923 20 Si 0.996 3.004 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.271 1.271 24 C -0.124 4.124 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.115 4.115 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.411 0.589 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.346 0.654 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.394 0.606 44 H 0.278 0.722 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.056 0.944 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.121 21.749 0.227 24.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.012 3.988 3 C -0.226 4.226 4 O -0.311 6.311 5 C -0.035 4.035 6 C 0.301 3.699 7 O -0.444 6.444 8 N -0.345 5.345 9 C 0.097 3.903 10 C -0.076 4.076 11 N -0.298 5.298 12 C -0.068 4.068 13 C 0.230 3.770 14 O -0.503 6.503 15 N -0.211 5.211 16 C -0.463 4.463 17 H 0.100 0.900 18 C -0.215 4.215 19 N -0.564 5.564 20 Si 0.819 3.181 21 H -0.194 1.194 22 H -0.197 1.197 23 H -0.196 1.196 24 C -0.162 4.162 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.154 4.154 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.247 0.753 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.165 0.835 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.228 0.772 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.094 0.906 48 H 0.102 0.898 49 H 0.093 0.907 50 H 0.091 0.909 51 H 0.075 0.925 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.361 22.139 0.130 24.884 hybrid contribution -0.207 -1.480 0.099 1.498 sum 11.154 20.658 0.228 23.478 Atomic orbital electron populations 1.21893 0.93461 1.02236 1.03198 1.22406 0.95472 0.93348 0.87543 1.22259 1.01777 0.95484 1.03076 1.88027 1.35816 1.70267 1.36994 1.22342 0.88214 0.97775 0.95217 1.20557 0.80965 0.78610 0.89793 1.90658 1.52441 1.61938 1.39403 1.45709 1.22280 1.54461 1.12011 1.20994 0.93743 0.91818 0.83788 1.22480 1.00364 0.92783 0.91973 1.59903 1.11939 1.16498 1.41453 1.21475 0.98108 0.92503 0.94670 1.20676 0.82840 0.83702 0.89808 1.90461 1.49259 1.76621 1.33933 1.41955 1.35924 1.24448 1.18807 1.19693 1.21756 1.06146 0.98662 0.90035 1.26107 0.95169 0.99805 1.00398 1.69689 1.24750 1.33515 1.28415 0.84890 0.77903 0.77687 0.77629 1.19406 1.19680 1.19570 1.22682 0.91319 0.99072 1.03106 1.22479 0.98089 0.96923 0.97713 1.22387 0.92945 1.01742 0.98711 1.22370 0.98042 0.97469 0.97542 0.92645 0.88697 0.93404 0.90693 0.92814 0.91883 0.89569 0.87539 0.89514 0.75284 0.93544 0.91987 0.83484 0.91815 0.89738 0.77209 0.91300 0.90082 0.89804 0.90633 0.89799 0.90702 0.90909 0.92484 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.56 71.98 0.69 -2.16 16 2 C 0.07 1.34 3.34 30.59 0.10 1.44 16 3 C -0.17 -2.45 9.53 71.98 0.69 -1.77 16 4 O -0.39 -10.71 9.52 -129.94 -1.24 -11.95 16 5 C 0.04 0.98 6.23 71.24 0.44 1.42 16 6 C 0.51 14.37 6.95 87.66 0.61 14.98 16 7 O -0.57 -20.86 13.79 15.99 0.22 -20.64 16 8 N -0.69 -15.28 4.79 -419.63 -2.01 -17.30 16 9 C 0.18 3.99 0.69 4.33 0.00 4.00 16 10 C 0.05 1.51 4.10 86.30 0.35 1.86 16 11 N -0.67 -22.06 5.80 -517.95 -3.00 -25.06 16 12 C 0.07 2.47 6.16 85.56 0.53 3.00 16 13 C 0.44 21.81 7.82 87.66 0.69 22.50 16 14 O -0.62 -34.15 15.78 -3.06 -0.05 -34.20 16 15 N -0.57 -30.59 5.29 -306.99 -1.62 -32.21 16 16 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16 17 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 18 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 19 N -0.92 -51.13 13.05 21.66 0.28 -50.84 16 20 Si 1.00 43.42 29.55 68.60 2.03 45.45 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 24 C -0.12 -2.00 5.33 31.67 0.17 -1.83 16 25 C -0.11 -1.41 6.91 31.89 0.22 -1.19 16 26 C -0.12 -1.74 6.83 31.67 0.22 -1.52 16 27 C -0.12 -2.42 5.22 31.32 0.16 -2.26 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.21 7.79 -2.39 -0.02 1.19 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.81 7.87 -2.39 -0.02 0.79 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.11 1.57 7.87 -2.39 -0.02 1.55 16 36 H 0.09 1.79 8.09 -2.39 -0.02 1.77 16 37 H 0.41 6.95 8.23 -92.71 -0.76 6.19 16 38 H 0.05 1.16 8.00 -2.39 -0.02 1.14 16 39 H 0.06 2.12 6.59 -2.39 -0.02 2.11 16 40 H 0.35 11.19 7.81 -89.69 -0.70 10.49 16 41 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 42 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.39 20.28 7.90 -92.70 -0.73 19.55 16 44 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 45 H 0.08 1.32 7.76 -2.39 -0.02 1.30 16 46 H 0.08 1.28 7.70 -2.39 -0.02 1.26 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 51 H 0.06 1.37 7.00 -2.39 -0.02 1.35 16 52 H 0.06 1.37 7.67 -2.39 -0.02 1.35 16 Total: -1.00 -76.27 418.04 -0.51 -76.78 By element: Atomic # 1 Polarization: 51.60 SS G_CDS: -1.26 Total: 50.34 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 6.15 Total: 19.64 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -6.36 Total: -125.41 kcal Atomic # 8 Polarization: -65.73 SS G_CDS: -1.06 Total: -66.79 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -76.27 -0.51 -76.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567993136.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.197 kcal (2) G-P(sol) polarization free energy of solvation -76.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds