Wall clock time and date at job start Wed Apr 1 2020 00:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46813 * 2 1 4 4 O 1.42897 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.42905 * 113.99899 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47179 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00363 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99988 * 179.97438 * 6 5 4 9 9 C 1.46923 * 120.62964 * 359.97438 * 8 6 5 10 10 C 1.53194 * 108.77322 * 126.36706 * 9 8 6 11 11 C 1.53041 * 109.30970 * 54.64020 * 10 9 8 12 12 H 1.09000 * 109.46215 * 58.64833 * 11 10 9 13 13 N 1.46897 * 109.45996 * 178.61251 * 11 10 9 14 14 C 1.46902 * 111.00099 * 274.99891 * 13 11 10 15 15 C 1.50697 * 109.47116 * 179.97438 * 14 13 11 16 16 O 1.21291 * 120.00152 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00131 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00221 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00399 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99806 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00328 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99905 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47234 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46988 * 120.00073 * 22 20 18 25 25 H 1.48498 * 109.47477 * 239.99996 * 22 20 18 26 26 C 1.53039 * 109.53647 * 298.63046 * 11 10 9 27 27 H 1.08997 * 109.49901 * 301.41704 * 26 11 10 28 28 C 1.53001 * 109.49681 * 181.34876 * 26 11 10 29 29 C 1.46927 * 120.62995 * 179.71961 * 8 6 5 30 30 H 1.09009 * 109.46679 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47333 * 299.99784 * 1 2 3 32 32 H 1.08995 * 109.47223 * 60.00394 * 1 2 3 33 33 H 1.08999 * 109.47698 * 239.99945 * 2 1 3 34 34 H 1.09000 * 109.47585 * 119.99871 * 2 1 3 35 35 H 1.08994 * 109.46995 * 60.00009 * 3 2 1 36 36 H 1.09003 * 109.46755 * 299.99517 * 3 2 1 37 37 H 1.08998 * 109.46937 * 59.99497 * 5 4 3 38 38 H 1.09002 * 109.46814 * 299.99307 * 5 4 3 39 39 H 1.08998 * 109.59009 * 246.15627 * 9 8 6 40 40 H 1.09003 * 109.58381 * 6.44334 * 9 8 6 41 41 H 1.08996 * 109.49478 * 174.58662 * 10 9 8 42 42 H 1.08997 * 109.50001 * 294.65599 * 10 9 8 43 43 H 1.00907 * 111.00350 * 38.94968 * 13 11 10 44 44 H 1.08995 * 109.46740 * 299.99880 * 14 13 11 45 45 H 1.09000 * 109.46857 * 59.99637 * 14 13 11 46 46 H 0.97001 * 119.99451 * 359.97438 * 17 15 14 47 47 H 0.96999 * 120.00173 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.47013 * 60.00259 * 28 26 11 49 49 H 1.09004 * 109.46826 * 180.02562 * 28 26 11 50 50 H 1.08994 * 109.47695 * 300.00124 * 28 26 11 51 51 H 1.09003 * 109.58790 * 353.42296 * 29 8 6 52 52 H 1.09007 * 109.58432 * 113.84106 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0501 2.7481 -0.0001 6 6 5.5523 2.6292 -0.0001 7 8 6.0740 1.5343 -0.0001 8 7 6.3163 3.7397 -0.0002 9 6 5.6990 5.0729 -0.0008 10 6 6.2719 5.8820 1.1671 11 6 7.7993 5.8965 1.0716 12 1 8.0994 6.3318 0.1184 13 7 8.3508 6.6993 2.1712 14 6 8.3781 8.1253 1.8198 15 6 8.9481 8.9153 2.9696 16 8 9.2977 8.3462 3.9821 17 7 9.0694 10.2541 2.8729 18 6 9.5885 10.9727 3.9187 19 1 9.8998 10.4661 4.8203 20 6 9.7140 12.3529 3.8187 21 7 9.3358 12.9694 2.7216 22 14 10.4206 13.3321 5.2440 23 1 10.7680 12.4094 6.3545 24 1 11.6419 14.0481 4.7955 25 1 9.4142 14.3173 5.7150 26 6 8.3318 4.4650 1.1685 27 1 8.0111 4.0206 2.1107 28 6 9.8604 4.4835 1.1067 29 6 7.7821 3.6398 0.0059 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 3.7288 3.2885 0.8903 38 1 3.7281 3.2895 -0.8897 39 1 5.9224 5.5787 -0.9401 40 1 4.6194 4.9757 0.1141 41 1 5.8949 6.9036 1.1215 42 1 5.9702 5.4245 2.1093 43 1 7.8342 6.5471 3.0246 44 1 8.9993 8.2698 0.9359 45 1 7.3644 8.4676 1.6113 46 1 8.7902 10.7091 2.0630 47 1 9.4231 13.9329 2.6520 48 1 10.2505 5.0729 1.9365 49 1 10.2391 3.4637 1.1753 50 1 10.1807 4.9269 0.1639 51 1 8.0769 2.5975 0.1276 52 1 8.1786 4.0265 -0.9330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568353824.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:17 Heat of formation + Delta-G solvation = -126.898856 kcal Electronic energy + Delta-G solvation = -29779.264466 eV Core-core repulsion = 25585.373549 eV Total energy + Delta-G solvation = -4193.890917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.63160 -38.90858 -38.19309 -37.59277 -35.18934 -34.13274 -33.93095 -33.21708 -31.32158 -30.95522 -29.21142 -27.10430 -26.64892 -25.55959 -24.59040 -23.32486 -22.39492 -22.00088 -20.58515 -19.61512 -19.07316 -17.90464 -17.75226 -16.94657 -16.84668 -16.19551 -15.87737 -15.68571 -15.13927 -15.00107 -14.90586 -14.62785 -14.42304 -14.28805 -13.90235 -13.82196 -13.59141 -13.40613 -12.95923 -12.71393 -12.49163 -12.47565 -12.40329 -12.32669 -12.20788 -12.00054 -11.64719 -11.58204 -11.45768 -11.35827 -11.32401 -11.16158 -11.04884 -10.82817 -10.49928 -10.36297 -10.24566 -10.11891 -9.95029 -9.54424 -8.94543 -8.48215 -8.05431 -7.97800 -6.44409 -3.85134 2.31477 2.38499 3.14428 3.25323 3.32541 3.39168 3.88060 4.03837 4.16221 4.26508 4.38133 4.49674 4.56902 4.65892 4.70038 4.72559 4.75632 4.86566 4.92968 5.00121 5.01452 5.03517 5.08741 5.20581 5.23237 5.27160 5.30300 5.45344 5.50293 5.55532 5.56251 5.65619 5.68267 5.71822 5.77178 5.83615 5.88271 5.96309 6.08968 6.17630 6.22796 6.31044 6.56595 6.66215 7.07703 7.20034 7.53065 7.62296 7.90266 8.04135 8.58629 9.15695 9.51793 10.03175 10.73348 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.001749 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.401411 B =16008.893662 C =16891.529074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.365 6.365 5 C 0.046 3.954 6 C 0.517 3.483 7 O -0.521 6.521 8 N -0.611 5.611 9 C 0.110 3.890 10 C -0.170 4.170 11 C 0.093 3.907 12 H 0.079 0.921 13 N -0.659 5.659 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C -0.091 4.091 27 H 0.073 0.927 28 C -0.136 4.136 29 C 0.117 3.883 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.350 0.650 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.080 0.920 49 H 0.047 0.953 50 H 0.050 0.950 51 H 0.094 0.906 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.343 -18.070 -10.880 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.283 6.283 5 C -0.034 4.034 6 C 0.303 3.697 7 O -0.395 6.395 8 N -0.346 5.346 9 C -0.013 4.013 10 C -0.210 4.210 11 C -0.018 4.018 12 H 0.097 0.903 13 N -0.289 5.289 14 C -0.081 4.081 15 C 0.226 3.774 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.111 4.111 27 H 0.092 0.908 28 C -0.194 4.194 29 C -0.005 4.005 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.169 0.831 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.099 0.901 49 H 0.066 0.934 50 H 0.069 0.931 51 H 0.112 0.888 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.050 -19.121 -10.408 25.910 hybrid contribution -1.064 1.663 0.183 1.983 sum -15.114 -17.458 -10.226 25.254 Atomic orbital electron populations 1.21699 0.94602 1.02374 1.02031 1.21452 0.95645 0.95333 1.03700 1.22652 0.80381 0.98397 1.00304 1.88005 1.19652 1.25245 1.95425 1.22233 0.91816 0.86912 1.02443 1.20198 0.88603 0.84201 0.76654 1.90724 1.74419 1.26133 1.48269 1.48087 1.07146 1.05634 1.73758 1.21743 0.97558 0.82653 0.99385 1.22752 0.98490 1.00754 0.98969 1.21622 0.90401 0.94016 0.95771 0.90255 1.60155 1.58315 1.05504 1.04963 1.21698 0.99465 0.88427 0.98538 1.19827 0.85420 0.82976 0.89216 1.90531 1.54320 1.69730 1.32094 1.41872 1.55709 1.05013 1.17490 1.19755 1.37528 0.89107 0.96465 0.87874 1.25255 0.97706 0.96915 0.98043 1.69615 1.47876 1.10233 1.26608 0.85809 0.78412 0.79350 0.80828 1.19211 1.20733 1.20787 1.21366 0.97028 0.94303 0.98385 0.90824 1.21639 0.93368 1.01213 1.03162 1.21704 0.77853 1.02316 0.98617 0.91908 0.92470 0.92511 0.90971 0.90924 0.93077 0.93144 0.90234 0.90323 0.90703 0.90061 0.90243 0.91000 0.83054 0.89666 0.93997 0.77510 0.91935 0.90060 0.93407 0.93130 0.88759 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.12 -0.82 6.30 -26.73 -0.17 -0.99 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 O -0.36 -3.94 9.88 -55.14 -0.54 -4.48 16 5 C 0.05 0.39 4.76 36.00 0.17 0.56 16 6 C 0.52 6.00 7.78 -10.98 -0.09 5.92 16 7 O -0.52 -8.32 15.91 -14.35 -0.23 -8.55 16 8 N -0.61 -5.90 2.98 -173.01 -0.52 -6.42 16 9 C 0.11 0.78 6.34 -3.71 -0.02 0.76 16 10 C -0.17 -1.49 5.33 -26.61 -0.14 -1.63 16 11 C 0.09 1.01 1.89 -67.67 -0.13 0.88 16 12 H 0.08 0.84 7.80 -51.93 -0.40 0.43 16 13 N -0.66 -9.65 5.05 -107.95 -0.55 -10.19 16 14 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 15 C 0.44 10.02 7.82 -10.99 -0.09 9.93 16 16 O -0.58 -15.45 15.78 5.55 0.09 -15.36 16 17 N -0.56 -13.93 5.29 -10.97 -0.06 -13.99 16 18 C -0.30 -8.22 9.68 -14.94 -0.14 -8.36 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.14 13.05 55.50 0.72 -23.42 16 22 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 C -0.09 -0.99 2.58 -90.70 -0.23 -1.22 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 28 C -0.14 -1.55 9.03 37.16 0.34 -1.22 16 29 C 0.12 1.19 5.69 -3.91 -0.02 1.17 16 30 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.52 7.70 -51.93 -0.40 0.12 16 38 H 0.08 0.47 7.94 -51.93 -0.41 0.06 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.41 5.93 -51.93 -0.31 0.10 16 41 H 0.08 0.68 7.43 -51.93 -0.39 0.29 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.35 5.46 8.18 -39.29 -0.32 5.14 16 44 H 0.09 1.29 8.05 -51.93 -0.42 0.88 16 45 H 0.04 0.60 7.41 -51.93 -0.39 0.22 16 46 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 47 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 48 H 0.08 1.13 7.57 -51.93 -0.39 0.74 16 49 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.09 1.10 7.01 -51.93 -0.36 0.74 16 52 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 417.56 15.07 6.29 6.29 Total: -1.00 -33.86 417.56 -9.00 -42.85 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -9.12 Total: 10.07 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -0.06 Total: 7.41 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.39 Total: -54.02 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.69 Total: -28.39 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.86 -9.00 -42.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568353824.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.045 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds