Wall clock time and date at job start Wed Apr 1 2020 00:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46813 * 2 1 4 4 O 1.42897 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.42905 * 113.99899 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47179 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00363 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99988 * 179.97438 * 6 5 4 9 9 C 1.46923 * 120.62964 * 359.97438 * 8 6 5 10 10 C 1.53194 * 108.77322 * 126.36706 * 9 8 6 11 11 C 1.53041 * 109.30970 * 54.64020 * 10 9 8 12 12 H 1.09000 * 109.46215 * 58.64833 * 11 10 9 13 13 N 1.46897 * 109.45996 * 178.61251 * 11 10 9 14 14 C 1.46902 * 111.00099 * 274.99891 * 13 11 10 15 15 C 1.50697 * 109.47116 * 179.97438 * 14 13 11 16 16 O 1.21291 * 120.00152 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00131 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00221 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00399 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99806 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00328 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99905 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47234 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46988 * 120.00073 * 22 20 18 25 25 H 1.48498 * 109.47477 * 239.99996 * 22 20 18 26 26 C 1.53039 * 109.53647 * 298.63046 * 11 10 9 27 27 H 1.08997 * 109.49901 * 301.41704 * 26 11 10 28 28 C 1.53001 * 109.49681 * 181.34876 * 26 11 10 29 29 C 1.46927 * 120.62995 * 179.71961 * 8 6 5 30 30 H 1.09009 * 109.46679 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47333 * 299.99784 * 1 2 3 32 32 H 1.08995 * 109.47223 * 60.00394 * 1 2 3 33 33 H 1.08999 * 109.47698 * 239.99945 * 2 1 3 34 34 H 1.09000 * 109.47585 * 119.99871 * 2 1 3 35 35 H 1.08994 * 109.46995 * 60.00009 * 3 2 1 36 36 H 1.09003 * 109.46755 * 299.99517 * 3 2 1 37 37 H 1.08998 * 109.46937 * 59.99497 * 5 4 3 38 38 H 1.09002 * 109.46814 * 299.99307 * 5 4 3 39 39 H 1.08998 * 109.59009 * 246.15627 * 9 8 6 40 40 H 1.09003 * 109.58381 * 6.44334 * 9 8 6 41 41 H 1.08996 * 109.49478 * 174.58662 * 10 9 8 42 42 H 1.08997 * 109.50001 * 294.65599 * 10 9 8 43 43 H 1.00907 * 111.00350 * 38.94968 * 13 11 10 44 44 H 1.08995 * 109.46740 * 299.99880 * 14 13 11 45 45 H 1.09000 * 109.46857 * 59.99637 * 14 13 11 46 46 H 0.97001 * 119.99451 * 359.97438 * 17 15 14 47 47 H 0.96999 * 120.00173 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.47013 * 60.00259 * 28 26 11 49 49 H 1.09004 * 109.46826 * 180.02562 * 28 26 11 50 50 H 1.08994 * 109.47695 * 300.00124 * 28 26 11 51 51 H 1.09003 * 109.58790 * 353.42296 * 29 8 6 52 52 H 1.09007 * 109.58432 * 113.84106 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0501 2.7481 -0.0001 6 6 5.5523 2.6292 -0.0001 7 8 6.0740 1.5343 -0.0001 8 7 6.3163 3.7397 -0.0002 9 6 5.6990 5.0729 -0.0008 10 6 6.2719 5.8820 1.1671 11 6 7.7993 5.8965 1.0716 12 1 8.0994 6.3318 0.1184 13 7 8.3508 6.6993 2.1712 14 6 8.3781 8.1253 1.8198 15 6 8.9481 8.9153 2.9696 16 8 9.2977 8.3462 3.9821 17 7 9.0694 10.2541 2.8729 18 6 9.5885 10.9727 3.9187 19 1 9.8998 10.4661 4.8203 20 6 9.7140 12.3529 3.8187 21 7 9.3358 12.9694 2.7216 22 14 10.4206 13.3321 5.2440 23 1 10.7680 12.4094 6.3545 24 1 11.6419 14.0481 4.7955 25 1 9.4142 14.3173 5.7150 26 6 8.3318 4.4650 1.1685 27 1 8.0111 4.0206 2.1107 28 6 9.8604 4.4835 1.1067 29 6 7.7821 3.6398 0.0059 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 3.7288 3.2885 0.8903 38 1 3.7281 3.2895 -0.8897 39 1 5.9224 5.5787 -0.9401 40 1 4.6194 4.9757 0.1141 41 1 5.8949 6.9036 1.1215 42 1 5.9702 5.4245 2.1093 43 1 7.8342 6.5471 3.0246 44 1 8.9993 8.2698 0.9359 45 1 7.3644 8.4676 1.6113 46 1 8.7902 10.7091 2.0630 47 1 9.4231 13.9329 2.6520 48 1 10.2505 5.0729 1.9365 49 1 10.2391 3.4637 1.1753 50 1 10.1807 4.9269 0.1639 51 1 8.0769 2.5975 0.1276 52 1 8.1786 4.0265 -0.9330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568353824.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:16 Heat of formation + Delta-G solvation = -150.653109 kcal Electronic energy + Delta-G solvation = -29780.294528 eV Core-core repulsion = 25585.373549 eV Total energy + Delta-G solvation = -4194.920979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45834 -40.20844 -39.38360 -38.51164 -36.33951 -35.77535 -34.65044 -34.15525 -33.23946 -31.95459 -29.92078 -28.45246 -27.36669 -26.50461 -25.92436 -24.36421 -23.26884 -22.48892 -21.54210 -20.99966 -20.21495 -19.82609 -18.51765 -17.76385 -17.56687 -17.50822 -16.81625 -16.67579 -16.40501 -16.19235 -16.07752 -15.71248 -15.43659 -15.26952 -15.16451 -15.03607 -14.46871 -14.31516 -13.96628 -13.83516 -13.50760 -13.38045 -13.37098 -13.06665 -13.03423 -12.96392 -12.90197 -12.86075 -12.71978 -12.41644 -12.38024 -12.11675 -11.96443 -11.83939 -11.79827 -11.73185 -11.49873 -11.39820 -10.82666 -10.69722 -10.31005 -9.99230 -9.75676 -9.18299 -8.45718 -5.93820 1.37006 1.42690 1.48946 1.56249 1.67812 2.08455 2.29979 2.79692 2.93747 3.22189 3.47652 3.53354 3.68051 3.90751 4.00082 4.02659 4.04605 4.10032 4.18953 4.22985 4.31434 4.35296 4.40928 4.42959 4.48587 4.54865 4.58223 4.62243 4.64268 4.72160 4.74843 4.78799 4.80489 4.84295 4.98061 5.13824 5.15935 5.19136 5.22696 5.33498 5.35416 5.41279 5.42739 5.59267 5.94216 6.07507 6.17462 6.34150 6.44210 6.62558 7.08678 7.15019 7.59266 8.15148 8.71722 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.001749 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.401411 B =16008.893662 C =16891.529074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.055 3.945 4 O -0.402 6.402 5 C 0.047 3.953 6 C 0.508 3.492 7 O -0.577 6.577 8 N -0.606 5.606 9 C 0.109 3.891 10 C -0.164 4.164 11 C 0.095 3.905 12 H 0.093 0.907 13 N -0.674 5.674 14 C 0.069 3.931 15 C 0.437 3.563 16 O -0.625 6.625 17 N -0.574 5.574 18 C -0.333 4.333 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.990 3.010 23 H -0.275 1.275 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.083 4.083 27 H 0.054 0.946 28 C -0.132 4.132 29 C 0.121 3.879 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.342 0.658 44 H 0.103 0.897 45 H 0.071 0.929 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.052 0.948 49 H 0.051 0.949 50 H 0.060 0.940 51 H 0.074 0.926 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.215 -16.842 -12.406 27.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C -0.020 4.020 4 O -0.322 6.322 5 C -0.032 4.032 6 C 0.297 3.703 7 O -0.456 6.456 8 N -0.340 5.340 9 C -0.013 4.013 10 C -0.204 4.204 11 C -0.015 4.015 12 H 0.111 0.889 13 N -0.304 5.304 14 C -0.063 4.063 15 C 0.225 3.775 16 O -0.512 6.512 17 N -0.211 5.211 18 C -0.463 4.463 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.814 3.186 23 H -0.200 1.200 24 H -0.197 1.197 25 H -0.196 1.196 26 C -0.103 4.103 27 H 0.073 0.927 28 C -0.190 4.190 29 C -0.001 4.001 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.161 0.839 44 H 0.121 0.879 45 H 0.089 0.911 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.080 0.920 51 H 0.092 0.908 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.948 -17.856 -11.971 26.767 hybrid contribution -0.458 1.230 0.660 1.469 sum -16.406 -16.626 -11.311 25.952 Atomic orbital electron populations 1.21668 0.92937 1.02855 1.02736 1.21486 0.97056 0.95309 1.02556 1.22831 0.78777 0.98681 1.01753 1.87968 1.21605 1.26836 1.95765 1.22378 0.89227 0.86656 1.04960 1.20898 0.90170 0.83679 0.75533 1.90697 1.75614 1.28274 1.51042 1.48180 1.06784 1.06472 1.72566 1.21989 0.98983 0.80806 0.99502 1.22670 0.96519 1.01730 0.99444 1.21675 0.92049 0.92948 0.94806 0.88931 1.60111 1.59510 1.04909 1.05911 1.21537 1.00723 0.88364 0.95708 1.20997 0.83716 0.82565 0.90253 1.90503 1.55759 1.70466 1.34460 1.41929 1.56236 1.05809 1.17127 1.19676 1.39650 0.90087 0.96863 0.90546 1.25973 0.97500 0.97199 1.00407 1.69664 1.47896 1.10791 1.27652 0.84915 0.78160 0.77809 0.77719 1.19997 1.19716 1.19562 1.21255 0.96557 0.94601 0.97880 0.92740 1.21570 0.93883 1.01073 1.02447 1.21582 0.78692 1.00992 0.98874 0.91615 0.91881 0.91615 0.91976 0.92295 0.91791 0.91323 0.87919 0.87088 0.88542 0.87167 0.89069 0.91889 0.83942 0.87878 0.91073 0.76919 0.91342 0.92859 0.92961 0.92045 0.90797 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.91 71.98 0.71 -0.42 16 2 C -0.13 -1.60 6.30 30.60 0.19 -1.41 16 3 C 0.06 0.69 5.94 71.98 0.43 1.12 16 4 O -0.40 -8.25 9.88 -129.94 -1.28 -9.53 16 5 C 0.05 0.68 4.76 71.23 0.34 1.02 16 6 C 0.51 11.25 7.78 87.65 0.68 11.93 16 7 O -0.58 -18.88 15.91 16.00 0.25 -18.62 16 8 N -0.61 -10.47 2.98 -819.65 -2.44 -12.91 16 9 C 0.11 1.12 6.34 86.36 0.55 1.67 16 10 C -0.16 -2.37 5.33 30.67 0.16 -2.20 16 11 C 0.09 1.86 1.89 44.94 0.09 1.95 16 12 H 0.09 1.62 7.80 -2.39 -0.02 1.60 16 13 N -0.67 -19.06 5.05 -495.45 -2.50 -21.56 16 14 C 0.07 2.12 5.96 85.56 0.51 2.63 16 15 C 0.44 19.94 7.82 87.66 0.69 20.62 16 16 O -0.63 -34.00 15.78 -3.07 -0.05 -34.05 16 17 N -0.57 -28.50 5.29 -306.99 -1.62 -30.12 16 18 C -0.33 -18.65 9.68 84.04 0.81 -17.83 16 19 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 20 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 21 N -0.92 -48.49 13.05 21.66 0.28 -48.21 16 22 Si 0.99 42.43 29.55 68.60 2.03 44.46 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 C -0.08 -1.74 2.58 -10.85 -0.03 -1.77 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 C -0.13 -2.99 9.03 71.98 0.65 -2.34 16 29 C 0.12 2.34 5.69 86.23 0.49 2.83 16 30 H 0.06 0.47 8.14 -2.38 -0.02 0.46 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.10 0.99 7.70 -2.39 -0.02 0.97 16 38 H 0.11 0.87 7.94 -2.39 -0.02 0.85 16 39 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.11 0.55 5.93 -2.39 -0.01 0.54 16 41 H 0.09 1.17 7.43 -2.39 -0.02 1.15 16 42 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.34 10.59 8.18 -89.69 -0.73 9.86 16 44 H 0.10 2.85 8.05 -2.39 -0.02 2.83 16 45 H 0.07 1.81 7.41 -2.39 -0.02 1.79 16 46 H 0.40 18.54 7.90 -92.71 -0.73 17.81 16 47 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 48 H 0.05 1.52 7.57 -2.39 -0.02 1.50 16 49 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.07 1.77 7.01 -2.39 -0.02 1.75 16 52 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -76.90 417.56 0.86 -76.04 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: -0.55 Total: 36.84 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 6.74 Total: 17.67 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -6.28 Total: -112.80 kcal Atomic # 8 Polarization: -61.13 SS G_CDS: -1.08 Total: -62.20 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -76.90 0.86 -76.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568353824.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.609 kcal (2) G-P(sol) polarization free energy of solvation -76.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds