Wall clock time and date at job start Wed Apr 1 2020 00:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47131 * 2 1 4 4 O 1.42907 * 109.46970 * 180.02562 * 3 2 1 5 5 C 1.42901 * 113.99791 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47051 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00130 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99750 * 179.97438 * 6 5 4 9 9 C 1.46919 * 120.63395 * 0.02562 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.29715 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 H 1.09000 * 109.43268 * 58.76205 * 11 10 9 13 13 N 1.46900 * 109.42051 * 178.67519 * 11 10 9 14 14 C 1.46907 * 110.99928 * 275.13331 * 13 11 10 15 15 C 1.50697 * 109.46998 * 179.97438 * 14 13 11 16 16 O 1.21292 * 120.00436 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99767 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99735 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00117 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99708 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99883 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00193 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47267 * 89.99514 * 22 20 18 24 24 H 1.48498 * 109.47075 * 209.99710 * 22 20 18 25 25 H 1.48504 * 109.47007 * 329.99536 * 22 20 18 26 26 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 27 27 H 1.09000 * 109.49784 * 181.32304 * 26 11 10 28 28 C 1.52994 * 109.52669 * 301.40520 * 26 11 10 29 29 C 1.46933 * 120.62602 * 179.97438 * 8 6 5 30 30 H 1.09000 * 109.46926 * 299.99895 * 1 2 3 31 31 H 1.08998 * 109.47125 * 60.00006 * 1 2 3 32 32 H 1.08999 * 109.47182 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46926 * 240.00105 * 2 1 3 34 34 H 1.08998 * 109.47125 * 119.99994 * 2 1 3 35 35 H 1.09000 * 109.47130 * 60.00230 * 3 2 1 36 36 H 1.08998 * 109.47111 * 300.00002 * 3 2 1 37 37 H 1.09003 * 109.47619 * 60.00068 * 5 4 3 38 38 H 1.09001 * 109.47419 * 299.99872 * 5 4 3 39 39 H 1.09002 * 109.58751 * 246.15665 * 9 8 6 40 40 H 1.08996 * 109.58750 * 6.43850 * 9 8 6 41 41 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 42 42 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 43 43 H 1.00900 * 111.00301 * 151.17769 * 13 11 10 44 44 H 1.09005 * 109.46585 * 299.99650 * 14 13 11 45 45 H 1.08994 * 109.47323 * 59.99764 * 14 13 11 46 46 H 0.96991 * 120.00394 * 359.97438 * 17 15 14 47 47 H 0.96999 * 120.00145 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.47642 * 179.85351 * 28 26 11 49 49 H 1.09000 * 109.47515 * 299.85664 * 28 26 11 50 50 H 1.09007 * 109.46694 * 59.85449 * 28 26 11 51 51 H 1.08994 * 109.58580 * 353.42544 * 29 8 6 52 52 H 1.09006 * 109.57831 * 113.70037 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0001 6 6 5.5526 2.6289 -0.0014 7 8 6.0742 1.5340 -0.0022 8 7 6.3165 3.7393 -0.0017 9 6 5.6993 5.0726 -0.0002 10 6 6.2710 5.8825 1.1678 11 6 7.8013 5.8950 1.0698 12 1 8.1001 6.3312 0.1166 13 7 8.3546 6.6968 2.1693 14 6 8.3799 8.1235 1.8196 15 6 8.9518 8.9123 2.9692 16 8 9.3032 8.3424 3.9806 17 7 9.0727 10.2513 2.8736 18 6 9.5925 10.9691 3.9197 19 1 9.9054 10.4615 4.8201 20 6 9.7177 12.3494 3.8208 21 7 10.2164 13.0373 4.8233 22 14 9.1771 13.2271 2.2630 23 1 7.7485 13.6143 2.3833 24 1 10.0052 14.4442 2.0679 25 1 9.3479 12.3204 1.0994 26 6 8.3338 4.4635 1.1647 27 1 9.4228 4.4766 1.1185 28 6 7.8864 3.8380 2.4873 29 6 7.7824 3.6393 -0.0024 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.7291 3.2884 0.8904 38 1 3.7283 3.2894 -0.8896 39 1 5.9214 5.5791 -0.9394 40 1 4.6200 4.9754 0.1163 41 1 5.8918 6.9034 1.1227 42 1 5.9710 5.4237 2.1099 43 1 9.2742 6.3713 2.4271 44 1 8.9992 8.2696 0.9345 45 1 7.3656 8.4652 1.6139 46 1 8.7921 10.7071 2.0647 47 1 10.3034 14.0009 4.7545 48 1 8.2639 2.8176 2.5529 49 1 8.2789 4.4247 3.3179 50 1 6.7973 3.8262 2.5335 51 1 8.0776 2.5967 0.1149 52 1 8.1745 4.0264 -0.9430 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568353828.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:25 Heat of formation + Delta-G solvation = -115.550674 kcal Electronic energy + Delta-G solvation = -30025.854961 eV Core-core repulsion = 25832.456138 eV Total energy + Delta-G solvation = -4193.398823 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.75370 -38.98855 -38.32615 -37.66138 -35.23653 -34.12991 -33.96609 -32.95168 -31.69243 -31.14890 -29.17142 -27.27292 -26.80786 -25.72107 -24.55010 -23.68044 -22.51176 -22.00286 -20.43888 -19.46039 -18.79440 -18.26791 -17.79417 -16.96693 -16.83248 -16.33657 -15.84933 -15.68883 -15.46006 -15.18660 -14.83706 -14.80091 -14.72308 -14.07833 -13.99980 -13.86605 -13.54505 -13.36891 -13.08565 -12.84116 -12.59755 -12.55711 -12.48533 -12.39807 -12.21509 -12.07775 -11.89913 -11.78481 -11.49419 -11.35968 -11.34184 -11.29884 -11.17437 -10.70653 -10.62324 -10.50020 -10.12035 -10.00045 -9.93574 -9.59862 -8.94561 -8.60741 -8.22615 -8.17504 -6.33414 -3.84992 2.30535 2.37302 2.99245 3.03864 3.12402 3.38522 3.71252 3.98370 4.07736 4.15458 4.39046 4.49428 4.52169 4.59656 4.68285 4.73466 4.74366 4.77808 4.86263 4.90915 4.97812 5.00898 5.03337 5.17141 5.18527 5.25667 5.27107 5.34558 5.48564 5.52590 5.55329 5.57297 5.61037 5.68031 5.75058 5.76209 5.77401 5.86643 5.95756 5.97780 6.16094 6.21339 6.40359 6.64844 7.06060 7.08471 7.53231 7.56183 7.89225 8.12253 8.57312 8.92726 9.39989 9.80256 10.79737 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019628 B = 0.001832 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.197581 B =15280.577358 C =15899.608157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.365 6.365 5 C 0.045 3.955 6 C 0.518 3.482 7 O -0.521 6.521 8 N -0.607 5.607 9 C 0.105 3.895 10 C -0.128 4.128 11 C 0.093 3.907 12 H 0.044 0.956 13 N -0.662 5.662 14 C 0.048 3.952 15 C 0.449 3.551 16 O -0.564 6.564 17 N -0.591 5.591 18 C -0.306 4.306 19 H 0.119 0.881 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.107 4.107 27 H 0.083 0.917 28 C -0.139 4.139 29 C 0.120 3.880 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.352 0.648 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.048 0.952 49 H 0.071 0.929 50 H 0.054 0.946 51 H 0.095 0.905 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.453 -19.113 -16.044 29.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.283 6.283 5 C -0.034 4.034 6 C 0.305 3.695 7 O -0.396 6.396 8 N -0.343 5.343 9 C -0.018 4.018 10 C -0.167 4.167 11 C -0.017 4.017 12 H 0.062 0.938 13 N -0.295 5.295 14 C -0.085 4.085 15 C 0.235 3.765 16 O -0.446 6.446 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.126 4.126 27 H 0.101 0.899 28 C -0.196 4.196 29 C -0.003 4.003 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.173 0.827 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.067 0.933 49 H 0.090 0.910 50 H 0.073 0.927 51 H 0.114 0.886 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.349 -20.019 -14.912 29.840 hybrid contribution 0.166 1.519 -1.822 2.378 sum -16.182 -18.500 -16.733 29.735 Atomic orbital electron populations 1.21699 0.94604 1.02372 1.02036 1.21449 0.95647 0.95346 1.03686 1.22650 0.80374 0.98383 1.00317 1.88004 1.19653 1.25244 1.95430 1.22235 0.91797 0.86923 1.02484 1.20180 0.88594 0.84165 0.76592 1.90722 1.74411 1.26133 1.48286 1.48008 1.06862 1.05737 1.73718 1.21849 0.97744 0.82611 0.99605 1.22060 0.95446 1.00490 0.98664 1.21536 0.94805 0.92503 0.92888 0.93830 1.60084 1.31126 1.00956 1.37293 1.21757 1.01202 0.89352 0.96145 1.19718 0.84819 0.82559 0.89393 1.90571 1.52893 1.69356 1.31744 1.42209 1.57903 1.06208 1.16717 1.19435 1.37884 0.89712 0.96404 0.86292 1.25038 0.97452 0.96156 0.97494 1.69621 1.44121 1.07691 1.30665 0.86669 0.79513 0.80290 0.82867 1.19613 1.20195 1.19571 1.21660 1.00371 0.94401 0.96200 0.89890 1.21749 1.01538 0.99809 0.96525 1.21653 0.78534 1.02273 0.97791 0.92449 0.92524 0.91915 0.91001 0.90913 0.93034 0.93167 0.90127 0.90368 0.90965 0.89872 0.90367 0.89981 0.82688 0.93840 0.89603 0.79737 0.91607 0.93273 0.91002 0.92675 0.88624 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.32 16 2 C -0.12 -0.81 6.30 -26.73 -0.17 -0.97 16 3 C 0.06 0.41 5.94 37.16 0.22 0.64 16 4 O -0.37 -3.85 9.88 -55.14 -0.54 -4.40 16 5 C 0.05 0.37 4.76 36.01 0.17 0.55 16 6 C 0.52 5.77 7.78 -10.98 -0.09 5.68 16 7 O -0.52 -8.05 15.91 -14.35 -0.23 -8.27 16 8 N -0.61 -5.52 2.41 -172.79 -0.42 -5.94 16 9 C 0.11 0.71 6.33 -3.71 -0.02 0.69 16 10 C -0.13 -1.14 5.27 -26.45 -0.14 -1.28 16 11 C 0.09 0.95 2.15 -67.52 -0.15 0.81 16 12 H 0.04 0.42 7.80 -51.93 -0.40 0.02 16 13 N -0.66 -9.30 5.25 -107.78 -0.57 -9.86 16 14 C 0.05 0.74 5.96 -4.97 -0.03 0.71 16 15 C 0.45 9.86 7.82 -10.99 -0.09 9.77 16 16 O -0.56 -14.81 15.78 5.55 0.09 -14.72 16 17 N -0.59 -13.72 5.09 -10.96 -0.06 -13.78 16 18 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 19 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.50 13.96 55.50 0.77 -24.73 16 22 Si 0.88 19.00 27.74 -169.99 -4.71 14.28 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 26 C -0.11 -1.04 2.58 -90.53 -0.23 -1.27 16 27 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 28 C -0.14 -1.56 8.56 37.15 0.32 -1.24 16 29 C 0.12 1.12 5.82 -3.73 -0.02 1.10 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.51 7.70 -51.93 -0.40 0.11 16 38 H 0.08 0.44 7.94 -51.93 -0.41 0.03 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.39 5.93 -51.93 -0.31 0.09 16 41 H 0.08 0.68 7.43 -51.93 -0.39 0.30 16 42 H 0.08 0.85 6.34 -51.93 -0.33 0.52 16 43 H 0.35 5.29 7.96 -39.29 -0.31 4.98 16 44 H 0.04 0.59 8.05 -51.93 -0.42 0.17 16 45 H 0.09 1.16 7.42 -51.93 -0.39 0.77 16 46 H 0.37 7.50 5.76 -40.82 -0.24 7.26 16 47 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.92 7.59 -51.93 -0.39 0.52 16 50 H 0.05 0.64 5.98 -51.92 -0.31 0.33 16 51 H 0.10 1.03 7.00 -51.93 -0.36 0.67 16 52 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 409.73 15.07 6.17 6.17 Total: -1.00 -35.33 409.73 -8.46 -43.79 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -8.86 Total: 10.27 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -0.10 Total: 7.19 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.26 Total: -54.31 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.69 Total: -27.39 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.33 -8.46 -43.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568353828.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.761 kcal (2) G-P(sol) polarization free energy of solvation -35.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds