Wall clock time and date at job start Wed Apr 1 2020 00:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 O 1.42899 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.42905 * 113.99778 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46972 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00041 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00037 * 180.02562 * 6 5 4 9 9 C 1.46928 * 120.62856 * 359.71632 * 8 6 5 10 10 C 1.52761 * 109.00629 * 233.58929 * 9 8 6 11 11 C 1.53045 * 109.38221 * 305.58631 * 10 9 8 12 12 H 1.08999 * 109.44956 * 301.22847 * 11 10 9 13 13 N 1.46904 * 109.45996 * 181.26270 * 11 10 9 14 14 C 1.46900 * 110.99846 * 84.93315 * 13 11 10 15 15 C 1.50692 * 109.47305 * 180.02562 * 14 13 11 16 16 O 1.21292 * 119.99990 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00498 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00592 * 180.02562 * 17 15 14 19 19 H 1.08008 * 119.99766 * 359.97438 * 18 17 15 20 20 C 1.38944 * 120.00294 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00307 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00005 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47143 * 59.99694 * 22 20 18 24 24 H 1.48497 * 109.46970 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47033 * 299.99648 * 22 20 18 26 26 C 1.53036 * 109.53562 * 61.24591 * 11 10 9 27 27 H 1.09000 * 109.53026 * 58.60061 * 26 11 10 28 28 C 1.53002 * 109.49490 * 178.68468 * 26 11 10 29 29 C 1.46924 * 120.63200 * 179.97438 * 8 6 5 30 30 H 1.08999 * 109.46874 * 59.99868 * 1 2 3 31 31 H 1.08999 * 109.47165 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47059 * 299.99976 * 1 2 3 33 33 H 1.08997 * 109.47213 * 239.99740 * 2 1 3 34 34 H 1.09008 * 109.46725 * 119.99857 * 2 1 3 35 35 H 1.08997 * 109.47286 * 59.99785 * 3 2 1 36 36 H 1.08997 * 109.46848 * 299.99883 * 3 2 1 37 37 H 1.09000 * 109.47187 * 300.00233 * 5 4 3 38 38 H 1.09001 * 109.46558 * 60.00281 * 5 4 3 39 39 H 1.09002 * 109.58533 * 353.42389 * 9 8 6 40 40 H 1.08996 * 109.58066 * 113.84691 * 9 8 6 41 41 H 1.09002 * 109.56255 * 185.55684 * 10 9 8 42 42 H 1.08991 * 109.36323 * 65.49887 * 10 9 8 43 43 H 1.00895 * 111.00043 * 208.88578 * 13 11 10 44 44 H 1.09006 * 109.47040 * 300.00230 * 14 13 11 45 45 H 1.08999 * 109.47131 * 59.99809 * 14 13 11 46 46 H 0.97005 * 119.99931 * 359.97438 * 17 15 14 47 47 H 0.97002 * 120.00188 * 179.97438 * 21 20 18 48 48 H 1.09007 * 109.46967 * 179.83915 * 28 26 11 49 49 H 1.09000 * 109.47114 * 299.83308 * 28 26 11 50 50 H 1.08994 * 109.47511 * 59.83826 * 28 26 11 51 51 H 1.08990 * 109.58875 * 246.15416 * 29 8 6 52 52 H 1.09007 * 109.58456 * 6.58164 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0503 2.7479 0.0001 6 6 5.5525 2.6289 0.0001 7 8 6.0741 1.5339 0.0001 8 7 6.3165 3.7392 0.0002 9 6 5.6993 5.0726 -0.0060 10 6 6.2731 5.8810 -1.1683 11 6 7.8004 5.8954 -1.0718 12 1 8.0998 6.3311 -0.1186 13 7 8.3527 6.6976 -2.1716 14 6 8.3784 8.1240 -1.8214 15 6 8.9492 8.9134 -2.9711 16 8 9.3006 8.3437 -3.9827 17 7 9.0703 10.2522 -2.8752 18 6 9.5891 10.9704 -3.9214 19 1 9.9012 10.4632 -4.8224 20 6 9.7145 12.3506 -3.8222 21 7 9.3352 12.9678 -2.7257 22 14 10.4221 13.3291 -5.2475 23 1 9.5763 13.1312 -6.4520 24 1 10.4486 14.7709 -4.8932 25 1 11.8033 12.8629 -5.5305 26 6 8.3328 4.4638 -1.1677 27 1 8.0132 4.0185 -2.1099 28 6 9.8614 4.4822 -1.1041 29 6 7.7824 3.6393 0.0008 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.7290 3.2883 -0.8903 38 1 3.7282 3.2893 0.8897 39 1 4.6205 4.9752 -0.1278 40 1 5.9187 5.5811 0.9327 41 1 5.8961 6.9027 -1.1234 42 1 5.9724 5.4228 -2.1104 43 1 9.2721 6.3722 -2.4302 44 1 7.3642 8.4657 -1.6146 45 1 8.9983 8.2698 -0.9368 46 1 8.7897 10.7078 -2.0661 47 1 9.4231 13.9313 -2.6564 48 1 10.2400 3.4621 -1.1695 49 1 10.2526 5.0689 -1.9352 50 1 10.1806 4.9284 -0.1623 51 1 8.1748 4.0289 0.9401 52 1 8.0776 2.5966 -0.1165 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568353830.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:28 Heat of formation + Delta-G solvation = -124.584727 kcal Electronic energy + Delta-G solvation = -29778.587495 eV Core-core repulsion = 25584.796927 eV Total energy + Delta-G solvation = -4193.790569 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.62768 -38.92063 -38.17929 -37.59370 -35.25789 -34.10974 -33.93209 -33.12569 -31.32872 -31.03018 -29.24952 -27.08079 -26.78187 -25.67336 -24.58304 -23.43837 -22.22174 -21.98062 -20.46211 -19.49525 -19.10343 -17.91188 -17.73559 -16.92249 -16.78579 -16.43726 -15.87502 -15.63255 -15.42067 -15.02102 -14.78411 -14.54037 -14.43208 -14.24471 -13.93023 -13.76599 -13.60780 -13.34987 -13.09044 -12.77046 -12.53910 -12.48948 -12.39863 -12.32660 -12.18381 -12.16475 -11.90404 -11.56244 -11.34495 -11.30533 -11.29364 -11.11783 -11.05119 -10.90580 -10.45990 -10.41591 -10.22796 -10.09284 -9.92719 -9.51939 -8.92765 -8.46600 -8.09585 -7.97907 -6.43633 -3.84526 2.32613 2.39765 3.18746 3.24541 3.28976 3.41220 3.88626 4.03737 4.17868 4.26262 4.46240 4.51733 4.55696 4.61297 4.71015 4.72416 4.78855 4.88570 4.91579 5.01250 5.02600 5.05601 5.12470 5.19863 5.21387 5.27790 5.29262 5.39175 5.44914 5.56040 5.57148 5.58491 5.70001 5.70190 5.76829 5.78780 5.87354 5.93698 6.02159 6.07492 6.15938 6.23773 6.31501 6.67561 7.08881 7.21929 7.53158 7.65480 7.91247 8.04266 8.59293 9.15980 9.52207 10.03783 10.73945 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019330 B = 0.001749 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.190461 B =16008.216269 C =16897.726157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.365 6.365 5 C 0.046 3.954 6 C 0.517 3.483 7 O -0.522 6.522 8 N -0.610 5.610 9 C 0.105 3.895 10 C -0.126 4.126 11 C 0.093 3.907 12 H 0.045 0.955 13 N -0.666 5.666 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.301 4.301 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C -0.107 4.107 27 H 0.085 0.915 28 C -0.153 4.153 29 C 0.121 3.879 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.352 0.648 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.056 0.944 51 H 0.069 0.931 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.782 -18.429 11.604 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.284 6.284 5 C -0.034 4.034 6 C 0.304 3.696 7 O -0.397 6.397 8 N -0.346 5.346 9 C -0.018 4.018 10 C -0.165 4.165 11 C -0.018 4.018 12 H 0.063 0.937 13 N -0.301 5.301 14 C -0.082 4.082 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.127 4.127 27 H 0.103 0.897 28 C -0.211 4.211 29 C -0.001 4.001 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.175 0.825 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.075 0.925 51 H 0.087 0.913 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.740 -19.328 10.628 25.987 hybrid contribution 0.665 1.461 0.457 1.669 sum -13.076 -17.867 11.085 24.760 Atomic orbital electron populations 1.21700 0.94610 1.02355 1.02042 1.21451 0.95642 0.95360 1.03675 1.22648 0.80380 0.98368 1.00336 1.88001 1.19653 1.25276 1.95438 1.22235 0.91722 0.86904 1.02551 1.20204 0.88650 0.84145 0.76552 1.90720 1.74448 1.26155 1.48374 1.48064 1.06927 1.05830 1.73749 1.21784 0.97753 0.82509 0.99729 1.21888 0.95553 1.00637 0.98421 1.21494 0.94553 0.92526 0.93181 0.93746 1.60138 1.31512 1.01271 1.37163 1.21712 1.01192 0.88966 0.96289 1.19817 0.85230 0.83101 0.89321 1.90526 1.54359 1.69800 1.32060 1.41856 1.55638 1.04999 1.17497 1.19659 1.37703 0.89133 0.96516 0.87982 1.25251 0.97678 0.96882 0.98042 1.69601 1.47706 1.10346 1.26676 0.85920 0.79533 0.78023 0.80756 1.19889 1.20974 1.19916 1.21661 0.95992 0.95392 0.99630 0.89655 1.21849 0.94245 1.02556 1.02432 1.21685 0.78267 1.02134 0.98030 0.92447 0.91929 0.92521 0.90928 0.91001 0.93145 0.93030 0.90074 0.90287 0.89812 0.90880 0.90127 0.90488 0.82507 0.89730 0.93946 0.77490 0.91828 0.91922 0.91370 0.92465 0.91287 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.83 6.30 -26.73 -0.17 -1.00 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 O -0.37 -3.97 9.88 -55.14 -0.54 -4.52 16 5 C 0.05 0.39 4.77 36.01 0.17 0.57 16 6 C 0.52 6.05 7.78 -10.99 -0.09 5.97 16 7 O -0.52 -8.33 15.91 -14.35 -0.23 -8.56 16 8 N -0.61 -5.98 2.98 -173.00 -0.52 -6.49 16 9 C 0.11 0.79 6.31 -3.93 -0.02 0.76 16 10 C -0.13 -1.24 5.57 -26.83 -0.15 -1.39 16 11 C 0.09 1.05 1.95 -67.67 -0.13 0.92 16 12 H 0.04 0.48 7.80 -51.93 -0.40 0.08 16 13 N -0.67 -10.20 5.93 -107.95 -0.64 -10.84 16 14 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 15 C 0.44 10.17 7.82 -10.99 -0.09 10.09 16 16 O -0.58 -15.67 15.78 5.55 0.09 -15.58 16 17 N -0.56 -14.03 5.29 -10.97 -0.06 -14.09 16 18 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 19 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 22 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 C -0.11 -1.13 2.56 -90.48 -0.23 -1.36 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 C -0.15 -1.52 8.94 37.16 0.33 -1.19 16 29 C 0.12 1.21 5.72 -3.69 -0.02 1.19 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.55 7.68 -51.93 -0.40 0.15 16 38 H 0.08 0.48 7.95 -51.93 -0.41 0.07 16 39 H 0.08 0.44 5.93 -51.93 -0.31 0.14 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.78 7.42 -51.93 -0.39 0.40 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.35 5.68 5.79 -39.29 -0.23 5.45 16 44 H 0.08 1.29 7.41 -51.93 -0.38 0.91 16 45 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 46 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 48 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 49 H 0.07 0.77 6.17 -51.93 -0.32 0.45 16 50 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 52 H 0.09 1.07 7.01 -51.92 -0.36 0.71 16 LS Contribution 414.83 15.07 6.25 6.25 Total: -1.00 -34.26 414.83 -8.98 -43.23 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -8.95 Total: 10.47 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -0.08 Total: 7.75 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.49 Total: -54.90 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.69 Total: -28.65 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.26 -8.98 -43.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568353830.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.352 kcal (2) G-P(sol) polarization free energy of solvation -34.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds