Wall clock time and date at job start Wed Apr 1 2020 00:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 O 1.42899 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.42905 * 113.99778 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46972 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00041 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00037 * 180.02562 * 6 5 4 9 9 C 1.46928 * 120.62856 * 359.71632 * 8 6 5 10 10 C 1.52761 * 109.00629 * 233.58929 * 9 8 6 11 11 C 1.53045 * 109.38221 * 305.58631 * 10 9 8 12 12 H 1.08999 * 109.44956 * 301.22847 * 11 10 9 13 13 N 1.46904 * 109.45996 * 181.26270 * 11 10 9 14 14 C 1.46900 * 110.99846 * 84.93315 * 13 11 10 15 15 C 1.50692 * 109.47305 * 180.02562 * 14 13 11 16 16 O 1.21292 * 119.99990 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00498 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00592 * 180.02562 * 17 15 14 19 19 H 1.08008 * 119.99766 * 359.97438 * 18 17 15 20 20 C 1.38944 * 120.00294 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00307 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00005 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47143 * 59.99694 * 22 20 18 24 24 H 1.48497 * 109.46970 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47033 * 299.99648 * 22 20 18 26 26 C 1.53036 * 109.53562 * 61.24591 * 11 10 9 27 27 H 1.09000 * 109.53026 * 58.60061 * 26 11 10 28 28 C 1.53002 * 109.49490 * 178.68468 * 26 11 10 29 29 C 1.46924 * 120.63200 * 179.97438 * 8 6 5 30 30 H 1.08999 * 109.46874 * 59.99868 * 1 2 3 31 31 H 1.08999 * 109.47165 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47059 * 299.99976 * 1 2 3 33 33 H 1.08997 * 109.47213 * 239.99740 * 2 1 3 34 34 H 1.09008 * 109.46725 * 119.99857 * 2 1 3 35 35 H 1.08997 * 109.47286 * 59.99785 * 3 2 1 36 36 H 1.08997 * 109.46848 * 299.99883 * 3 2 1 37 37 H 1.09000 * 109.47187 * 300.00233 * 5 4 3 38 38 H 1.09001 * 109.46558 * 60.00281 * 5 4 3 39 39 H 1.09002 * 109.58533 * 353.42389 * 9 8 6 40 40 H 1.08996 * 109.58066 * 113.84691 * 9 8 6 41 41 H 1.09002 * 109.56255 * 185.55684 * 10 9 8 42 42 H 1.08991 * 109.36323 * 65.49887 * 10 9 8 43 43 H 1.00895 * 111.00043 * 208.88578 * 13 11 10 44 44 H 1.09006 * 109.47040 * 300.00230 * 14 13 11 45 45 H 1.08999 * 109.47131 * 59.99809 * 14 13 11 46 46 H 0.97005 * 119.99931 * 359.97438 * 17 15 14 47 47 H 0.97002 * 120.00188 * 179.97438 * 21 20 18 48 48 H 1.09007 * 109.46967 * 179.83915 * 28 26 11 49 49 H 1.09000 * 109.47114 * 299.83308 * 28 26 11 50 50 H 1.08994 * 109.47511 * 59.83826 * 28 26 11 51 51 H 1.08990 * 109.58875 * 246.15416 * 29 8 6 52 52 H 1.09007 * 109.58456 * 6.58164 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0503 2.7479 0.0001 6 6 5.5525 2.6289 0.0001 7 8 6.0741 1.5339 0.0001 8 7 6.3165 3.7392 0.0002 9 6 5.6993 5.0726 -0.0060 10 6 6.2731 5.8810 -1.1683 11 6 7.8004 5.8954 -1.0718 12 1 8.0998 6.3311 -0.1186 13 7 8.3527 6.6976 -2.1716 14 6 8.3784 8.1240 -1.8214 15 6 8.9492 8.9134 -2.9711 16 8 9.3006 8.3437 -3.9827 17 7 9.0703 10.2522 -2.8752 18 6 9.5891 10.9704 -3.9214 19 1 9.9012 10.4632 -4.8224 20 6 9.7145 12.3506 -3.8222 21 7 9.3352 12.9678 -2.7257 22 14 10.4221 13.3291 -5.2475 23 1 9.5763 13.1312 -6.4520 24 1 10.4486 14.7709 -4.8932 25 1 11.8033 12.8629 -5.5305 26 6 8.3328 4.4638 -1.1677 27 1 8.0132 4.0185 -2.1099 28 6 9.8614 4.4822 -1.1041 29 6 7.7824 3.6393 0.0008 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.7290 3.2883 -0.8903 38 1 3.7282 3.2893 0.8897 39 1 4.6205 4.9752 -0.1278 40 1 5.9187 5.5811 0.9327 41 1 5.8961 6.9027 -1.1234 42 1 5.9724 5.4228 -2.1104 43 1 9.2721 6.3722 -2.4302 44 1 7.3642 8.4657 -1.6146 45 1 8.9983 8.2698 -0.9368 46 1 8.7897 10.7078 -2.0661 47 1 9.4231 13.9313 -2.6564 48 1 10.2400 3.4621 -1.1695 49 1 10.2526 5.0689 -1.9352 50 1 10.1806 4.9284 -0.1623 51 1 8.1748 4.0289 0.9401 52 1 8.0776 2.5966 -0.1165 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568353830.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:28 Heat of formation + Delta-G solvation = -148.848254 kcal Electronic energy + Delta-G solvation = -29779.639641 eV Core-core repulsion = 25584.796927 eV Total energy + Delta-G solvation = -4194.842714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.46545 -40.23084 -39.40065 -38.51703 -36.38607 -35.81200 -34.62837 -34.08104 -33.23896 -32.07257 -29.96862 -28.43120 -27.51704 -26.52346 -25.99022 -24.46940 -23.13964 -22.47965 -21.36239 -21.02585 -20.14323 -19.85599 -18.52633 -17.83372 -17.56987 -17.50591 -17.02581 -16.63205 -16.47228 -16.28271 -16.07841 -15.68815 -15.47992 -15.42115 -15.04575 -14.80636 -14.60555 -14.25337 -14.01993 -13.90493 -13.64766 -13.46042 -13.31676 -13.08934 -13.03710 -13.00678 -12.94462 -12.86971 -12.83985 -12.42684 -12.28990 -12.12025 -11.95524 -11.84352 -11.79867 -11.78871 -11.49530 -11.29189 -10.80192 -10.68483 -10.32156 -10.00420 -9.73642 -9.29420 -8.45782 -5.94321 1.40232 1.42483 1.49223 1.52937 1.68277 2.06982 2.29792 2.80187 2.92292 3.21721 3.45154 3.51610 3.71734 3.78648 3.88979 4.03660 4.07780 4.17429 4.19955 4.24253 4.29143 4.32762 4.38952 4.42336 4.47448 4.53522 4.56586 4.60543 4.63930 4.65336 4.73559 4.75487 4.80244 4.85184 4.90367 5.03975 5.16580 5.16710 5.23509 5.26229 5.35109 5.38017 5.41893 5.47996 5.93068 6.08306 6.16020 6.34598 6.43039 6.61696 7.08764 7.13902 7.57851 8.13644 8.71136 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019330 B = 0.001749 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.190461 B =16008.216269 C =16897.726157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.055 3.945 4 O -0.402 6.402 5 C 0.046 3.954 6 C 0.509 3.491 7 O -0.577 6.577 8 N -0.607 5.607 9 C 0.107 3.893 10 C -0.124 4.124 11 C 0.093 3.907 12 H 0.062 0.938 13 N -0.682 5.682 14 C 0.067 3.933 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.918 5.918 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.273 1.273 26 C -0.098 4.098 27 H 0.062 0.938 28 C -0.150 4.150 29 C 0.124 3.876 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.344 0.656 44 H 0.107 0.893 45 H 0.066 0.934 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.068 0.932 49 H 0.051 0.949 50 H 0.070 0.930 51 H 0.089 0.911 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.310 -17.272 13.196 26.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C -0.021 4.021 4 O -0.322 6.322 5 C -0.033 4.033 6 C 0.298 3.702 7 O -0.456 6.456 8 N -0.340 5.340 9 C -0.015 4.015 10 C -0.163 4.163 11 C -0.016 4.016 12 H 0.080 0.920 13 N -0.317 5.317 14 C -0.065 4.065 15 C 0.224 3.776 16 O -0.513 6.513 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.095 0.905 20 C -0.210 4.210 21 N -0.559 5.559 22 Si 0.814 3.186 23 H -0.199 1.199 24 H -0.194 1.194 25 H -0.198 1.198 26 C -0.118 4.118 27 H 0.080 0.920 28 C -0.208 4.208 29 C 0.001 3.999 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.166 0.834 44 H 0.125 0.875 45 H 0.084 0.916 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.089 0.911 51 H 0.107 0.893 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.298 -18.136 12.252 26.703 hybrid contribution 1.148 1.060 -0.046 1.563 sum -14.150 -17.076 12.206 25.314 Atomic orbital electron populations 1.21670 0.92947 1.02849 1.02734 1.21484 0.97049 0.95300 1.02554 1.22829 0.78788 0.98683 1.01760 1.87964 1.21597 1.26826 1.95770 1.22383 0.89236 0.86659 1.05001 1.20885 0.90177 0.83644 0.75464 1.90692 1.75614 1.28219 1.51086 1.48175 1.06764 1.06526 1.72570 1.21985 0.99097 0.80763 0.99629 1.21873 0.94310 1.01378 0.98727 1.21623 0.95493 0.92006 0.92505 0.92022 1.60176 1.31319 1.00848 1.39338 1.21574 1.02197 0.88912 0.93832 1.20955 0.83595 0.82724 0.90349 1.90496 1.55824 1.70538 1.34401 1.41912 1.56089 1.05756 1.17157 1.19619 1.39858 0.90138 0.96951 0.90493 1.25984 0.97434 0.97155 1.00436 1.69654 1.47653 1.10854 1.27733 0.85024 0.78622 0.77136 0.77769 1.19854 1.19423 1.19817 1.21539 0.96340 0.95053 0.98867 0.91983 1.21819 0.93836 1.02792 1.02371 1.21625 0.78843 1.01007 0.98426 0.91896 0.91608 0.91613 0.92305 0.91950 0.91299 0.91828 0.87950 0.87014 0.86990 0.88540 0.89372 0.92302 0.83385 0.87468 0.91585 0.76900 0.91293 0.91322 0.93011 0.91147 0.89320 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.91 71.98 0.71 -0.46 16 2 C -0.13 -1.63 6.30 30.59 0.19 -1.44 16 3 C 0.06 0.71 5.94 71.98 0.43 1.14 16 4 O -0.40 -8.37 9.88 -129.94 -1.28 -9.65 16 5 C 0.05 0.69 4.77 71.24 0.34 1.03 16 6 C 0.51 11.41 7.78 87.66 0.68 12.09 16 7 O -0.58 -18.84 15.91 16.00 0.25 -18.59 16 8 N -0.61 -10.72 2.98 -819.64 -2.44 -13.16 16 9 C 0.11 1.21 6.31 86.22 0.54 1.76 16 10 C -0.12 -2.12 5.57 30.53 0.17 -1.95 16 11 C 0.09 1.92 1.95 44.94 0.09 2.01 16 12 H 0.06 1.11 7.80 -2.39 -0.02 1.09 16 13 N -0.68 -20.25 5.93 -495.43 -2.94 -23.19 16 14 C 0.07 2.14 5.96 85.55 0.51 2.65 16 15 C 0.44 20.24 7.82 87.66 0.69 20.92 16 16 O -0.63 -34.45 15.78 -3.07 -0.05 -34.50 16 17 N -0.57 -28.67 5.29 -307.00 -1.62 -30.30 16 18 C -0.34 -18.89 9.68 84.04 0.81 -18.07 16 19 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 20 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 21 N -0.92 -48.54 13.05 21.66 0.28 -48.26 16 22 Si 0.99 42.43 29.55 68.60 2.03 44.46 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 C -0.10 -2.01 2.56 -10.70 -0.03 -2.03 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 C -0.15 -2.91 8.94 71.98 0.64 -2.27 16 29 C 0.12 2.33 5.72 86.38 0.49 2.82 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.10 1.07 7.68 -2.39 -0.02 1.05 16 38 H 0.11 0.91 7.95 -2.39 -0.02 0.89 16 39 H 0.11 0.68 5.93 -2.39 -0.01 0.66 16 40 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.09 1.41 7.42 -2.39 -0.02 1.39 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.34 11.14 5.79 -89.70 -0.52 10.62 16 44 H 0.11 2.97 7.41 -2.38 -0.02 2.95 16 45 H 0.07 1.83 8.05 -2.39 -0.02 1.81 16 46 H 0.40 18.71 7.90 -92.70 -0.73 17.98 16 47 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 48 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 49 H 0.05 1.18 6.17 -2.39 -0.01 1.17 16 50 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 52 H 0.08 1.77 7.01 -2.38 -0.02 1.75 16 Total: -1.00 -77.21 414.83 0.64 -76.57 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: -0.33 Total: 38.48 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 6.74 Total: 18.14 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -6.72 Total: -114.91 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: -1.08 Total: -62.74 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -77.21 0.64 -76.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568353830.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.282 kcal (2) G-P(sol) polarization free energy of solvation -77.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds