Wall clock time and date at job start Wed Apr 1 2020 00:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46959 * 2 1 4 4 O 1.42898 * 109.47389 * 180.02562 * 3 2 1 5 5 C 1.42904 * 114.00188 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46676 * 179.97438 * 5 4 3 7 7 O 1.21272 * 120.00331 * 359.97438 * 6 5 4 8 8 N 1.34785 * 119.99500 * 179.97438 * 6 5 4 9 9 C 1.48146 * 127.83657 * 0.02562 * 8 6 5 10 10 C 1.54389 * 104.71947 * 219.64948 * 9 8 6 11 11 C 1.54289 * 104.96102 * 336.07694 * 10 9 8 12 12 C 1.53002 * 110.34304 * 118.86760 * 11 10 9 13 13 C 1.52997 * 110.34219 * 241.02302 * 11 10 9 14 14 N 1.46901 * 109.47300 * 179.97438 * 13 11 10 15 15 C 1.46891 * 111.00170 * 180.02562 * 14 13 11 16 16 C 1.50704 * 109.47211 * 180.02562 * 15 14 13 17 17 O 1.21294 * 120.00045 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00034 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00020 * 180.02562 * 18 16 15 20 20 H 1.08010 * 119.99874 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00177 * 180.02562 * 19 18 16 22 22 N 1.31405 * 119.99879 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00019 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47267 * 89.99901 * 23 21 19 25 25 H 1.48500 * 109.47027 * 210.00307 * 23 21 19 26 26 H 1.48499 * 109.46831 * 329.99941 * 23 21 19 27 27 C 1.48427 * 127.97962 * 180.11990 * 8 6 5 28 28 H 1.09001 * 109.46884 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47358 * 300.00143 * 1 2 3 30 30 H 1.09001 * 109.47274 * 60.00205 * 1 2 3 31 31 H 1.08997 * 109.47358 * 239.99857 * 2 1 3 32 32 H 1.09001 * 109.47274 * 119.99795 * 2 1 3 33 33 H 1.08997 * 109.47202 * 59.99762 * 3 2 1 34 34 H 1.09001 * 109.46960 * 299.99988 * 3 2 1 35 35 H 1.08994 * 109.47239 * 59.99526 * 5 4 3 36 36 H 1.08997 * 109.46937 * 299.99163 * 5 4 3 37 37 H 1.09002 * 110.40776 * 100.80694 * 9 8 6 38 38 H 1.09002 * 110.40863 * 338.49103 * 9 8 6 39 39 H 1.08997 * 110.34484 * 94.94604 * 10 9 8 40 40 H 1.09003 * 110.34437 * 217.20778 * 10 9 8 41 41 H 1.08998 * 109.46904 * 60.00090 * 12 11 10 42 42 H 1.09003 * 109.46843 * 179.97438 * 12 11 10 43 43 H 1.08994 * 109.47149 * 300.00171 * 12 11 10 44 44 H 1.08997 * 109.47355 * 299.99919 * 13 11 10 45 45 H 1.09006 * 109.47231 * 60.00142 * 13 11 10 46 46 H 1.00897 * 110.99999 * 303.96158 * 14 13 11 47 47 H 1.08998 * 109.47388 * 299.99944 * 15 14 13 48 48 H 1.09001 * 109.47455 * 60.00676 * 15 14 13 49 49 H 0.97000 * 120.00396 * 0.02562 * 18 16 15 50 50 H 0.97005 * 119.99909 * 180.02562 * 22 21 19 51 51 H 1.09004 * 110.39413 * 21.57126 * 27 8 6 52 52 H 1.09006 * 110.49084 * 259.21157 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0501 2.7481 -0.0001 6 6 5.5524 2.6291 -0.0001 7 8 6.0740 1.5342 -0.0001 8 7 6.3164 3.7395 -0.0002 9 6 5.8675 5.1514 0.0003 10 6 6.8439 5.8738 -0.9528 11 6 8.1168 5.0019 -0.9548 12 6 8.4019 4.4801 -2.3646 13 6 9.3113 5.8033 -0.4336 14 7 10.5113 4.9559 -0.4431 15 6 11.6807 5.6937 0.0527 16 6 12.8897 4.7944 0.0277 17 8 12.7873 3.6513 -0.3649 18 7 14.0849 5.2604 0.4408 19 6 15.1849 4.4425 0.4176 20 1 15.0937 3.4246 0.0679 21 6 16.4170 4.9228 0.8439 22 7 16.5279 6.1609 1.2698 23 14 17.9159 3.8084 0.8116 24 1 18.5993 3.9358 -0.5005 25 1 18.8498 4.2032 1.8966 26 1 17.4901 2.4001 1.0132 27 6 7.7979 3.8290 -0.0027 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.7288 3.2885 0.8903 36 1 3.7282 3.2895 -0.8897 37 1 5.9353 5.5714 1.0038 38 1 4.8464 5.2257 -0.3738 39 1 6.4219 5.9304 -1.9561 40 1 7.0694 6.8725 -0.5787 41 1 8.5468 5.3223 -3.0412 42 1 9.3031 3.8671 -2.3498 43 1 7.5592 3.8797 -2.7071 44 1 9.4737 6.6709 -1.0732 45 1 9.1095 6.1354 0.5848 46 1 10.3628 4.1129 0.0910 47 1 11.8600 6.5605 -0.5834 48 1 11.4950 6.0250 1.0744 49 1 14.1670 6.1746 0.7545 50 1 17.3882 6.4964 1.5671 51 1 8.2337 2.9038 -0.3802 52 1 8.1691 4.0416 0.9999 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569662422.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:40 Heat of formation + Delta-G solvation = -121.029407 kcal Electronic energy + Delta-G solvation = -29448.338611 eV Core-core repulsion = 25254.702212 eV Total energy + Delta-G solvation = -4193.636399 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.50838 -38.95243 -38.19379 -37.64614 -35.41044 -34.09729 -33.88404 -32.71733 -31.18705 -29.87870 -29.22093 -27.46855 -26.67424 -25.61231 -24.84630 -23.85993 -22.65097 -22.00283 -19.80183 -19.43069 -18.99668 -17.87569 -17.61145 -17.02507 -16.65227 -16.39079 -15.88009 -15.68588 -15.48608 -14.94766 -14.65907 -14.45496 -14.36731 -14.24161 -13.86371 -13.74033 -13.63578 -13.26218 -13.01586 -12.85448 -12.56091 -12.49831 -12.46400 -12.33830 -12.15267 -11.86097 -11.71076 -11.52586 -11.44894 -11.37282 -11.32167 -11.03148 -10.88080 -10.85223 -10.71389 -10.37480 -10.19647 -10.12391 -9.96289 -9.48862 -8.96911 -8.44483 -8.04475 -7.93818 -6.40009 -3.80574 2.32694 2.38111 3.19781 3.28261 3.34533 3.42865 3.92766 3.99184 4.16612 4.26872 4.33008 4.47763 4.50122 4.56493 4.67336 4.70762 4.77939 4.85382 4.90139 4.98871 4.99223 5.01986 5.04624 5.19899 5.25468 5.26520 5.28081 5.44767 5.48205 5.55402 5.60446 5.68193 5.69543 5.72159 5.74188 5.78486 5.84356 5.92207 5.98203 6.09650 6.15007 6.28188 6.49134 6.65922 7.20347 7.27281 7.57237 7.64132 7.94483 8.08483 8.63390 9.20104 9.56402 10.08056 10.77779 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021420 B = 0.001645 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.863835 B =17012.652643 C =17887.487723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.052 3.948 6 C 0.533 3.467 7 O -0.514 6.514 8 N -0.624 5.624 9 C 0.098 3.902 10 C -0.127 4.127 11 C -0.070 4.070 12 C -0.129 4.129 13 C 0.073 3.927 14 N -0.667 5.667 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.113 3.887 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.045 0.955 44 H 0.077 0.923 45 H 0.029 0.971 46 H 0.349 0.651 47 H 0.086 0.914 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.091 0.909 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.351 2.607 -1.756 31.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.282 6.282 5 C -0.028 4.028 6 C 0.321 3.679 7 O -0.388 6.388 8 N -0.360 5.360 9 C -0.025 4.025 10 C -0.165 4.165 11 C -0.071 4.071 12 C -0.186 4.186 13 C -0.057 4.057 14 N -0.300 5.300 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.465 6.465 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.009 4.009 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.047 0.953 46 H 0.168 0.832 47 H 0.104 0.896 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.110 0.890 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -30.791 1.148 -2.597 30.921 hybrid contribution 0.515 0.675 1.220 1.486 sum -30.276 1.823 -1.377 30.362 Atomic orbital electron populations 1.21695 0.94613 1.02394 1.01952 1.21456 0.95616 0.95329 1.03816 1.22643 0.80366 0.98425 1.00206 1.88019 1.19647 1.25170 1.95411 1.22119 0.91430 0.86908 1.02365 1.19802 0.88121 0.83141 0.76866 1.90773 1.74337 1.25621 1.48095 1.48947 1.07790 1.05464 1.73848 1.22460 0.98767 0.81028 1.00245 1.22662 0.94712 0.98961 1.00197 1.21506 0.93965 0.94572 0.97054 1.21747 1.02241 1.01161 0.93452 1.22036 0.89032 0.95813 0.98785 1.60075 1.01861 1.07733 1.60285 1.21665 0.91000 0.97069 0.98436 1.19823 0.84362 0.88799 0.84452 1.90535 1.85100 1.19374 1.51539 1.41858 1.06881 1.14547 1.56810 1.19714 0.85815 0.96888 1.40431 0.87919 1.25246 0.99182 0.96494 0.96975 1.69611 1.26216 1.14901 1.43686 0.85864 0.80563 0.80091 0.77819 1.20397 1.20961 1.19417 1.22562 0.79049 1.00049 0.99265 0.91884 0.92530 0.92528 0.90877 0.90892 0.93160 0.93157 0.90409 0.90378 0.90730 0.90493 0.90399 0.89896 0.92621 0.90319 0.93594 0.90510 0.95279 0.83169 0.89585 0.93944 0.77499 0.91918 0.89019 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.32 16 2 C -0.12 -0.84 6.30 -26.73 -0.17 -1.01 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 O -0.36 -4.03 9.88 -55.14 -0.54 -4.58 16 5 C 0.05 0.45 5.40 36.01 0.19 0.64 16 6 C 0.53 6.66 8.00 -10.98 -0.09 6.58 16 7 O -0.51 -9.08 16.78 -14.35 -0.24 -9.32 16 8 N -0.62 -6.41 3.33 -169.06 -0.56 -6.97 16 9 C 0.10 0.62 6.91 -2.41 -0.02 0.60 16 10 C -0.13 -0.84 6.30 -25.33 -0.16 -1.00 16 11 C -0.07 -0.69 0.82 -153.10 -0.13 -0.81 16 12 C -0.13 -1.46 8.08 37.16 0.30 -1.16 16 13 C 0.07 0.80 4.36 -3.83 -0.02 0.79 16 14 N -0.67 -10.27 5.29 -115.06 -0.61 -10.88 16 15 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 16 C 0.44 10.39 7.82 -10.98 -0.09 10.30 16 17 O -0.58 -15.91 15.78 5.54 0.09 -15.82 16 18 N -0.56 -14.33 5.29 -10.96 -0.06 -14.38 16 19 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 20 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 23 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.11 1.30 5.23 -2.25 -0.01 1.28 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.48 7.95 -51.93 -0.41 0.06 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.31 7.30 -51.93 -0.38 -0.07 16 39 H 0.08 0.49 7.71 -51.93 -0.40 0.09 16 40 H 0.08 0.45 7.71 -51.93 -0.40 0.04 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.11 7.54 -51.93 -0.39 0.72 16 43 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.29 8.10 -51.93 -0.42 -0.13 16 46 H 0.35 5.73 7.54 -39.29 -0.30 5.44 16 47 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 48 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 50 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 51 H 0.09 1.30 7.61 -51.93 -0.40 0.91 16 52 H 0.07 0.79 7.83 -51.93 -0.41 0.39 16 LS Contribution 423.35 15.07 6.38 6.38 Total: -1.00 -35.41 423.35 -8.96 -44.37 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -9.26 Total: 9.53 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 0.14 Total: 9.33 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.51 Total: -56.14 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.70 Total: -29.71 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -35.41 -8.96 -44.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569662422.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.660 kcal (2) G-P(sol) polarization free energy of solvation -35.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds