Wall clock time and date at job start Wed Apr 1 2020 01:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47384 * 2 1 4 4 C 1.52999 * 109.47303 * 120.00567 * 2 1 3 5 5 H 1.08993 * 109.46773 * 300.00165 * 4 2 1 6 6 C 1.53001 * 109.46768 * 59.99665 * 4 2 1 7 7 C 1.50698 * 109.47004 * 179.97438 * 4 2 1 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 4 2 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 4 2 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 4 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 O 1.42901 * 110.27117 * 62.91015 * 11 10 9 13 13 C 1.54587 * 110.30821 * 300.71554 * 11 10 9 14 14 C 1.54937 * 102.92395 * 219.12561 * 13 11 10 15 15 N 1.48530 * 103.22657 * 37.41488 * 14 13 11 16 16 C 1.46897 * 110.99928 * 200.28033 * 15 14 13 17 17 C 1.50696 * 109.47013 * 307.39312 * 16 15 14 18 18 O 1.21291 * 120.00276 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99668 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99758 * 180.02562 * 19 17 16 21 21 H 1.07994 * 119.99996 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00004 * 180.02562 * 20 19 17 23 23 N 1.31423 * 119.99958 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00333 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46892 * 59.99539 * 24 22 20 26 26 H 1.48495 * 109.47034 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46606 * 300.00055 * 24 22 20 28 28 C 1.47905 * 105.81899 * 320.79212 * 15 14 13 29 29 H 1.09001 * 109.46719 * 299.99652 * 1 2 3 30 30 H 1.09001 * 109.47077 * 59.99240 * 1 2 3 31 31 H 1.08995 * 109.47540 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46897 * 240.00761 * 2 1 3 33 33 H 1.09003 * 109.47244 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47634 * 300.00419 * 3 2 1 35 35 H 1.09001 * 109.46908 * 60.00464 * 3 2 1 36 36 H 1.09001 * 109.47406 * 60.00127 * 6 4 2 37 37 H 1.09001 * 109.47038 * 180.02562 * 6 4 2 38 38 H 1.08995 * 109.47475 * 299.99715 * 6 4 2 39 39 H 0.97001 * 120.00485 * 0.02562 * 9 7 4 40 40 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 41 41 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 42 42 H 0.96700 * 114.00141 * 300.70086 * 12 11 10 43 43 H 1.09006 * 110.72476 * 337.48701 * 13 11 10 44 44 H 1.09008 * 110.72684 * 100.76408 * 13 11 10 45 45 H 1.08998 * 110.66392 * 278.97649 * 14 13 11 46 46 H 1.09005 * 110.80873 * 155.91643 * 14 13 11 47 47 H 1.08998 * 109.47443 * 67.39861 * 16 15 14 48 48 H 1.09002 * 109.46865 * 187.39651 * 16 15 14 49 49 H 0.97004 * 120.00473 * 0.02562 * 19 17 16 50 50 H 0.96994 * 119.99897 * 180.02562 * 23 22 20 51 51 H 1.08990 * 109.91990 * 265.97688 * 28 15 14 52 52 H 1.09008 * 109.91768 * 144.67986 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6767 -0.2076 2.1391 6 6 1.5299 -2.1638 1.2490 7 6 3.5470 -0.7219 1.2488 8 8 4.1535 -0.1966 0.3392 9 7 4.2209 -1.3052 2.2598 10 6 5.6858 -1.3110 2.2564 11 6 6.1959 -2.0367 3.5031 12 8 5.7800 -3.4038 3.4850 13 6 5.6823 -1.3342 4.7807 14 6 6.9022 -1.4112 5.7327 15 7 8.0575 -1.2062 4.8221 16 6 9.2987 -1.7101 5.4247 17 6 9.4700 -1.1113 6.7970 18 8 8.6395 -0.3409 7.2305 19 7 10.5455 -1.4326 7.5429 20 6 10.7011 -0.8883 8.7916 21 1 9.9620 -0.2017 9.1773 22 6 11.8102 -1.2191 9.5605 23 7 12.7098 -2.0542 9.0910 24 14 12.0226 -0.4769 11.2615 25 1 10.8682 -0.8567 12.1149 26 1 13.2777 -0.9859 11.8704 27 1 12.0909 1.0024 11.1510 28 6 7.7311 -1.9462 3.5838 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.8932 -2.6776 0.3589 37 1 1.8929 -2.6777 2.1391 38 1 0.4400 -2.1638 1.2491 39 1 3.7359 -1.7251 2.9874 40 1 6.0452 -1.8245 1.3645 41 1 6.0533 -0.2848 2.2576 42 1 4.8207 -3.5227 3.4562 43 1 5.4208 -0.2967 4.5718 44 1 4.8310 -1.8705 5.2002 45 1 6.9569 -2.3899 6.2094 46 1 6.8586 -0.6214 6.4827 47 1 9.2487 -2.7959 5.5057 48 1 10.1461 -1.4312 4.7983 49 1 11.2096 -2.0490 7.1964 50 1 13.4838 -2.2854 9.6278 51 1 8.1604 -2.9471 3.6252 52 1 8.1173 -1.4090 2.7174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569759855.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:29 Heat of formation + Delta-G solvation = -125.212960 kcal Electronic energy + Delta-G solvation = -30415.561773 eV Core-core repulsion = 26221.743962 eV Total energy + Delta-G solvation = -4193.817811 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.68521 -39.67463 -38.15991 -36.53577 -35.86826 -34.61287 -33.91106 -31.78091 -31.32206 -30.76347 -29.25619 -27.68149 -27.11901 -25.43750 -24.44106 -23.84900 -21.77099 -21.03718 -20.51521 -19.89065 -19.28445 -18.01869 -17.84100 -16.86489 -16.31404 -15.97542 -15.64357 -15.50807 -15.27986 -14.88603 -14.57748 -14.54488 -14.32303 -14.08264 -13.98926 -13.77815 -13.34438 -13.17849 -13.01707 -12.71433 -12.58627 -12.53795 -12.37218 -12.29457 -11.94311 -11.88064 -11.69986 -11.55843 -11.31503 -11.21129 -11.18028 -11.07583 -10.97983 -10.92994 -10.83852 -10.46171 -10.24099 -10.08724 -9.80893 -9.49922 -9.35463 -8.42134 -8.05461 -7.93802 -6.43891 -3.85013 2.37238 2.81465 3.18284 3.24500 3.28499 3.73546 3.86826 4.13379 4.20107 4.25164 4.32200 4.40574 4.46991 4.53286 4.68583 4.81179 4.92977 5.04871 5.05508 5.09051 5.22796 5.26446 5.33409 5.37453 5.39019 5.42781 5.50823 5.54977 5.57183 5.61375 5.68056 5.71431 5.73444 5.77393 5.85313 5.91979 5.94319 6.02807 6.06903 6.20316 6.24259 6.28997 6.59238 7.09320 7.14318 7.21848 7.36765 7.52875 7.94585 8.03029 8.58683 9.15102 9.50903 10.02299 10.73572 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.028060 B = 0.001814 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.629343 B =15430.735994 C =15684.950040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.075 4.075 3 C -0.161 4.161 4 C -0.108 4.108 5 H 0.097 0.903 6 C -0.147 4.147 7 C 0.518 3.482 8 O -0.531 6.531 9 N -0.730 5.730 10 C 0.102 3.898 11 C 0.111 3.889 12 O -0.550 6.550 13 C -0.152 4.152 14 C 0.042 3.958 15 N -0.492 5.492 16 C 0.036 3.964 17 C 0.442 3.558 18 O -0.582 6.582 19 N -0.560 5.560 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.900 5.900 24 Si 0.932 3.068 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C 0.048 3.952 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.396 0.604 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.370 0.630 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.039 0.961 46 H 0.121 0.879 47 H 0.051 0.949 48 H 0.092 0.908 49 H 0.393 0.607 50 H 0.272 0.728 51 H 0.062 0.938 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.695 -2.354 -16.427 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.218 4.218 4 C -0.129 4.129 5 H 0.115 0.885 6 C -0.204 4.204 7 C 0.305 3.695 8 O -0.408 6.408 9 N -0.382 5.382 10 C -0.022 4.022 11 C 0.070 3.930 12 O -0.355 6.355 13 C -0.190 4.190 14 C -0.085 4.085 15 N -0.217 5.217 16 C -0.096 4.096 17 C 0.228 3.772 18 O -0.467 6.467 19 N -0.196 5.196 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.541 5.541 24 Si 0.759 3.241 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.081 4.081 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.231 0.769 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.217 0.783 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.058 0.942 46 H 0.139 0.861 47 H 0.069 0.931 48 H 0.110 0.890 49 H 0.226 0.774 50 H 0.082 0.918 51 H 0.080 0.920 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.847 -1.076 -16.784 26.786 hybrid contribution -0.219 -1.123 1.184 1.647 sum -21.067 -2.200 -15.600 26.306 Atomic orbital electron populations 1.21930 0.94976 1.01802 1.02005 1.20897 0.95115 0.96812 0.96596 1.22082 1.03951 0.94762 1.00973 1.21418 0.91464 0.98674 1.01371 0.88467 1.21851 1.02198 0.93903 1.02483 1.20666 0.90046 0.77389 0.81436 1.90656 1.70407 1.43990 1.35704 1.46001 1.07332 1.59445 1.25469 1.22086 0.79586 1.02113 0.98416 1.22335 0.95905 0.81403 0.93385 1.86650 1.27105 1.24795 1.96952 1.23299 0.98971 1.01424 0.95353 1.23437 0.87201 1.02267 0.95629 1.64725 1.02352 1.51006 1.03574 1.22121 0.93785 0.97578 0.96124 1.19668 0.84411 0.86486 0.86672 1.90427 1.43660 1.39241 1.73400 1.41842 1.20689 1.41547 1.15533 1.19652 1.07355 1.24772 0.91242 0.87919 1.25277 0.95498 0.96872 1.00239 1.69608 1.11803 1.34063 1.38660 0.85906 0.77526 0.79279 0.81436 1.19927 1.20959 1.19868 1.22837 0.91253 0.98419 0.95587 0.92629 0.92439 0.92387 0.90619 0.89862 0.93028 0.93446 0.91960 0.92236 0.90964 0.76942 0.90608 0.89742 0.78267 0.89818 0.90874 0.94240 0.86139 0.93088 0.89028 0.77400 0.91770 0.92004 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.84 37.16 0.33 -0.48 16 2 C -0.08 -0.55 2.15 -90.62 -0.19 -0.75 16 3 C -0.16 -1.39 8.87 37.16 0.33 -1.06 16 4 C -0.11 -0.70 2.32 -91.77 -0.21 -0.92 16 5 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 6 C -0.15 -0.68 8.74 37.16 0.32 -0.36 16 7 C 0.52 4.88 6.86 -10.99 -0.08 4.81 16 8 O -0.53 -7.03 13.66 5.55 0.08 -6.95 16 9 N -0.73 -5.76 5.01 -60.29 -0.30 -6.06 16 10 C 0.10 1.02 4.50 -4.04 -0.02 1.00 16 11 C 0.11 1.20 1.05 -89.26 -0.09 1.11 16 12 O -0.55 -5.69 12.95 -35.23 -0.46 -6.14 16 13 C -0.15 -1.76 5.64 -24.87 -0.14 -1.90 16 14 C 0.04 0.68 5.31 -1.90 -0.01 0.67 16 15 N -0.49 -8.18 5.26 -231.89 -1.22 -9.40 16 16 C 0.04 0.64 5.52 -4.98 -0.03 0.61 16 17 C 0.44 10.32 7.49 -10.99 -0.08 10.23 16 18 O -0.58 -15.18 13.09 5.55 0.07 -15.10 16 19 N -0.56 -14.11 5.29 -10.97 -0.06 -14.17 16 20 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.61 5.50 -17.46 -0.10 0.52 16 23 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 24 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 C 0.05 0.63 6.18 -2.75 -0.02 0.61 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.26 6.43 -51.93 -0.33 -0.07 16 32 H 0.08 0.65 8.10 -51.93 -0.42 0.22 16 33 H 0.08 0.93 5.51 -51.93 -0.29 0.65 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.20 7.57 -51.93 -0.39 -0.19 16 38 H 0.07 0.26 6.43 -51.93 -0.33 -0.07 16 39 H 0.40 2.12 6.75 -40.82 -0.28 1.85 16 40 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.37 2.35 8.13 45.56 0.37 2.72 16 43 H 0.08 0.97 7.86 -51.93 -0.41 0.57 16 44 H 0.07 0.68 8.08 -51.92 -0.42 0.26 16 45 H 0.04 0.68 8.02 -51.93 -0.42 0.26 16 46 H 0.12 2.37 5.96 -51.93 -0.31 2.06 16 47 H 0.05 0.86 7.81 -51.93 -0.41 0.46 16 48 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 49 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 50 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 51 H 0.06 0.84 7.39 -51.93 -0.38 0.45 16 52 H 0.09 1.09 7.68 -51.92 -0.40 0.69 16 LS Contribution 406.18 15.07 6.12 6.12 Total: -1.00 -32.77 406.18 -8.25 -41.01 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -8.05 Total: 12.78 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -0.13 Total: 5.67 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.86 Total: -53.27 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.31 Total: -28.20 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.77 -8.25 -41.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569759855.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.198 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds