Wall clock time and date at job start Wed Apr 1 2020 01:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46915 * 2 1 4 4 C 1.52996 * 109.47255 * 120.00153 * 2 1 3 5 5 H 1.09000 * 109.47127 * 300.00517 * 4 2 1 6 6 C 1.52998 * 109.47255 * 179.97438 * 4 2 1 7 7 C 1.50704 * 109.47034 * 60.00071 * 4 2 1 8 8 O 1.21280 * 119.99865 * 359.97438 * 7 4 2 9 9 N 1.34779 * 119.99713 * 180.02562 * 7 4 2 10 10 C 1.46498 * 119.99630 * 179.97438 * 9 7 4 11 11 C 1.53002 * 109.46801 * 179.97438 * 10 9 7 12 12 O 1.42902 * 110.62744 * 61.90136 * 11 10 9 13 13 C 1.55422 * 110.69879 * 298.62667 * 11 10 9 14 14 C 1.54903 * 101.52531 * 205.97378 * 13 11 10 15 15 N 1.47848 * 104.89306 * 37.06419 * 14 13 11 16 16 C 1.46897 * 111.00191 * 213.57793 * 15 14 13 17 17 C 1.50699 * 109.47135 * 176.68625 * 16 15 14 18 18 O 1.21290 * 120.00109 * 6.06520 * 17 16 15 19 19 N 1.34774 * 120.00149 * 186.06480 * 17 16 15 20 20 C 1.37100 * 120.00378 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99500 * 0.02562 * 20 19 17 22 22 C 1.38940 * 120.00056 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00526 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99990 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47260 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47243 * 120.00248 * 24 22 20 27 27 H 1.48501 * 109.47580 * 240.00068 * 24 22 20 28 28 C 1.47442 * 108.56533 * 335.85257 * 15 14 13 29 29 H 1.09000 * 109.47475 * 299.99543 * 1 2 3 30 30 H 1.09007 * 109.47438 * 59.99946 * 1 2 3 31 31 H 1.09000 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46819 * 240.00087 * 2 1 3 33 33 H 1.09001 * 109.47322 * 299.99876 * 3 2 1 34 34 H 1.09000 * 109.47306 * 60.00385 * 3 2 1 35 35 H 1.09005 * 109.47248 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47024 * 179.97438 * 6 4 2 37 37 H 1.09000 * 109.47475 * 300.00304 * 6 4 2 38 38 H 1.09000 * 109.47131 * 59.99989 * 6 4 2 39 39 H 0.96998 * 120.00000 * 359.97438 * 9 7 4 40 40 H 1.09002 * 109.47208 * 60.00413 * 10 9 7 41 41 H 1.08996 * 109.47633 * 299.99957 * 10 9 7 42 42 H 0.96698 * 113.99915 * 303.10168 * 12 11 10 43 43 H 1.09000 * 111.10676 * 87.90388 * 13 11 10 44 44 H 1.09007 * 111.00246 * 324.00113 * 13 11 10 45 45 H 1.08992 * 110.37615 * 278.18246 * 14 13 11 46 46 H 1.09000 * 110.37598 * 155.94615 * 14 13 11 47 47 H 1.08995 * 109.47339 * 296.69461 * 16 15 14 48 48 H 1.09001 * 109.46781 * 56.69070 * 16 15 14 49 49 H 0.97002 * 119.99964 * 0.02562 * 19 17 16 50 50 H 0.97001 * 120.00373 * 179.97438 * 23 22 20 51 51 H 1.09004 * 109.89459 * 120.39395 * 28 15 14 52 52 H 1.09005 * 109.88536 * 241.41879 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1392 6 6 3.5700 -0.7218 1.2489 7 6 1.5377 -2.1421 1.2491 8 8 0.8400 -2.5386 0.3397 9 7 1.8629 -2.9718 2.2602 10 6 1.3741 -4.3529 2.2604 11 6 1.8843 -5.0742 3.5096 12 8 1.3863 -4.4457 4.6925 13 6 3.4377 -5.1215 3.5207 14 6 3.7028 -6.3811 4.3825 15 7 2.6348 -7.3313 4.0053 16 6 2.2329 -8.1546 5.1536 17 6 1.0901 -9.0516 4.7530 18 8 0.7256 -9.0899 3.5968 19 7 0.4731 -9.8113 5.6796 20 6 -0.5669 -10.6270 5.3153 21 1 -0.8914 -10.6611 4.2858 22 6 -1.2027 -11.4106 6.2705 23 7 -0.8075 -11.3696 7.5231 24 14 -2.6192 -12.5226 5.7741 25 1 -2.8675 -12.3871 4.3162 26 1 -2.2752 -13.9327 6.0882 27 1 -3.8408 -12.1325 6.5230 28 6 1.4905 -6.5660 3.4773 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4426 0.0005 36 1 3.9333 -1.2353 2.1391 37 1 3.9330 -1.2358 0.3588 38 1 3.9337 0.3057 1.2486 39 1 2.4206 -2.6546 2.9877 40 1 1.7375 -4.8671 1.3706 41 1 0.2842 -4.3526 2.2603 42 1 1.6065 -3.5067 4.7614 43 1 3.8542 -4.2313 3.9919 44 1 3.8320 -5.2483 2.5123 45 1 3.6360 -6.1366 5.4425 46 1 4.6823 -6.7998 4.1513 47 1 3.0769 -8.7637 5.4771 48 1 1.9171 -7.5073 5.9718 49 1 0.7643 -9.7805 6.6043 50 1 -1.2516 -11.9164 8.1900 51 1 1.2808 -6.8720 2.4523 52 1 0.6126 -6.7339 4.1012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569759856.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:33 Heat of formation + Delta-G solvation = -126.978347 kcal Electronic energy + Delta-G solvation = -30649.057771 eV Core-core repulsion = 26455.163407 eV Total energy + Delta-G solvation = -4193.894364 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.65628 -39.68329 -38.04004 -36.54103 -35.81856 -34.57009 -33.86906 -31.76308 -31.23812 -30.78418 -29.34159 -27.65141 -26.99570 -25.53794 -24.43652 -23.92083 -21.67001 -20.91802 -20.68450 -19.92451 -19.06154 -17.97597 -17.81609 -16.94568 -16.26024 -15.91104 -15.64514 -15.56689 -15.26085 -14.93999 -14.66424 -14.43530 -14.22337 -14.10704 -13.94830 -13.77046 -13.32948 -13.06015 -12.87087 -12.59802 -12.52817 -12.47262 -12.41144 -12.33004 -11.98380 -11.91243 -11.76425 -11.51991 -11.43192 -11.31125 -11.18193 -11.07656 -10.95182 -10.94122 -10.76380 -10.32447 -10.20619 -10.11825 -9.78632 -9.48149 -9.32664 -8.37789 -7.98732 -7.93435 -6.39784 -3.80437 2.39402 2.82991 3.18009 3.28520 3.36007 3.91038 3.93867 4.04280 4.20823 4.22953 4.30445 4.36115 4.47386 4.49333 4.74351 4.81454 4.92778 5.05566 5.07488 5.10170 5.17443 5.26724 5.29528 5.33464 5.37248 5.43155 5.49576 5.52061 5.61453 5.63825 5.70073 5.73099 5.74828 5.81089 5.86115 5.92037 5.98032 6.02338 6.06264 6.13400 6.30308 6.31288 6.39663 7.13918 7.18958 7.25269 7.42340 7.57446 7.97152 8.08284 8.63298 9.19946 9.56295 10.07559 10.78036 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.002048 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.929445 B =13668.433321 C =14537.355108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.076 4.076 3 C -0.150 4.150 4 C -0.107 4.107 5 H 0.096 0.904 6 C -0.147 4.147 7 C 0.517 3.483 8 O -0.529 6.529 9 N -0.730 5.730 10 C 0.102 3.898 11 C 0.092 3.908 12 O -0.543 6.543 13 C -0.151 4.151 14 C 0.045 3.955 15 N -0.503 5.503 16 C 0.040 3.960 17 C 0.442 3.558 18 O -0.580 6.580 19 N -0.563 5.563 20 C -0.297 4.297 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.078 3.922 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.395 0.605 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.366 0.634 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.049 0.951 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.051 0.949 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.099 0.901 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.267 24.886 -6.820 28.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.095 4.095 3 C -0.207 4.207 4 C -0.128 4.128 5 H 0.114 0.886 6 C -0.204 4.204 7 C 0.303 3.697 8 O -0.405 6.405 9 N -0.383 5.383 10 C -0.022 4.022 11 C 0.050 3.950 12 O -0.348 6.348 13 C -0.189 4.189 14 C -0.083 4.083 15 N -0.227 5.227 16 C -0.092 4.092 17 C 0.227 3.773 18 O -0.464 6.464 19 N -0.200 5.200 20 C -0.427 4.427 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.050 4.050 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.229 0.771 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.213 0.787 43 H 0.092 0.908 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.098 0.902 47 H 0.108 0.892 48 H 0.069 0.931 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.117 0.883 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.374 23.473 -8.364 26.992 hybrid contribution -0.289 0.632 1.506 1.659 sum 10.086 24.105 -6.858 27.015 Atomic orbital electron populations 1.22083 0.94602 1.04156 1.00931 1.20900 0.96627 0.95282 0.96656 1.21929 1.01024 0.95756 1.01971 1.21413 0.97407 0.92725 1.01301 0.88574 1.21850 0.92928 1.03099 1.02549 1.20675 0.79937 0.87552 0.81530 1.90669 1.37189 1.77040 1.35594 1.46012 1.54123 1.12562 1.25608 1.21991 1.00528 0.81131 0.98543 1.23052 0.92821 0.95305 0.83805 1.86731 1.79344 1.26777 1.41907 1.23386 0.95270 0.98524 1.01714 1.23021 0.96385 0.91045 0.97834 1.63436 1.08184 1.20792 1.30292 1.22110 0.98630 0.96472 0.91970 1.19733 0.86003 0.84891 0.86670 1.90523 1.67529 1.69540 1.18815 1.41870 1.30543 1.37702 1.09894 1.19751 1.08428 1.17992 0.96520 0.87835 1.25263 0.99349 0.98512 0.94885 1.69623 1.42279 1.41206 1.01212 0.85804 0.80307 0.79318 0.78938 1.19204 1.20766 1.20787 1.22682 0.94098 0.84987 1.03214 0.93514 0.93004 0.89835 0.90551 0.92423 0.92687 0.92385 0.92255 0.91911 0.91005 0.77107 0.89872 0.90220 0.78703 0.90834 0.89530 0.93269 0.90160 0.89199 0.93134 0.77488 0.91952 0.88298 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.87 37.16 0.33 -1.09 16 2 C -0.08 -0.57 2.15 -90.62 -0.19 -0.76 16 3 C -0.15 -0.82 8.84 37.16 0.33 -0.49 16 4 C -0.11 -0.71 2.32 -91.77 -0.21 -0.92 16 5 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 6 C -0.15 -0.71 8.74 37.16 0.32 -0.38 16 7 C 0.52 5.06 6.86 -10.98 -0.08 4.99 16 8 O -0.53 -7.37 13.66 5.56 0.08 -7.29 16 9 N -0.73 -5.99 5.02 -60.29 -0.30 -6.29 16 10 C 0.10 1.14 4.75 -4.04 -0.02 1.12 16 11 C 0.09 1.08 0.93 -88.64 -0.08 1.00 16 12 O -0.54 -6.39 13.11 -35.23 -0.46 -6.85 16 13 C -0.15 -1.45 5.73 -24.44 -0.14 -1.59 16 14 C 0.04 0.55 6.71 -2.30 -0.02 0.53 16 15 N -0.50 -8.39 5.07 -232.69 -1.18 -9.57 16 16 C 0.04 0.73 5.29 -4.98 -0.03 0.70 16 17 C 0.44 10.57 6.95 -10.99 -0.08 10.50 16 18 O -0.58 -15.67 14.35 5.55 0.08 -15.59 16 19 N -0.56 -14.50 5.29 -10.97 -0.06 -14.56 16 20 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 21 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.81 13.05 55.50 0.72 -24.08 16 24 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 C 0.08 1.31 4.57 -2.83 -0.01 1.30 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.97 5.51 -51.93 -0.29 0.68 16 32 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.26 6.43 -51.93 -0.33 -0.07 16 36 H 0.06 0.22 7.56 -51.93 -0.39 -0.18 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.27 6.43 -51.93 -0.33 -0.07 16 39 H 0.39 2.07 6.71 -40.82 -0.27 1.80 16 40 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.37 2.65 8.05 45.56 0.37 3.02 16 43 H 0.07 0.50 8.04 -51.93 -0.42 0.08 16 44 H 0.09 0.83 8.05 -51.92 -0.42 0.41 16 45 H 0.05 0.59 7.72 -51.93 -0.40 0.19 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 48 H 0.05 0.88 8.01 -51.93 -0.42 0.47 16 49 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 50 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 51 H 0.10 1.77 7.69 -51.93 -0.40 1.37 16 52 H 0.07 1.49 6.67 -51.93 -0.35 1.14 16 LS Contribution 408.01 15.07 6.15 6.15 Total: -1.00 -34.05 408.01 -8.24 -42.29 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -8.13 Total: 12.62 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.11 Total: 6.86 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.82 Total: -54.50 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.31 Total: -29.73 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.05 -8.24 -42.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569759856.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.688 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds