Wall clock time and date at job start Wed Apr 1 2020 01:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46915 * 2 1 4 4 C 1.52996 * 109.47255 * 120.00153 * 2 1 3 5 5 H 1.09000 * 109.47127 * 300.00517 * 4 2 1 6 6 C 1.52998 * 109.47255 * 179.97438 * 4 2 1 7 7 C 1.50704 * 109.47034 * 60.00071 * 4 2 1 8 8 O 1.21280 * 119.99865 * 359.97438 * 7 4 2 9 9 N 1.34779 * 119.99713 * 180.02562 * 7 4 2 10 10 C 1.46498 * 119.99630 * 179.97438 * 9 7 4 11 11 C 1.53002 * 109.46801 * 179.97438 * 10 9 7 12 12 O 1.42902 * 110.62744 * 61.90136 * 11 10 9 13 13 C 1.55422 * 110.69879 * 298.62667 * 11 10 9 14 14 C 1.54903 * 101.52531 * 205.97378 * 13 11 10 15 15 N 1.47848 * 104.89306 * 37.06419 * 14 13 11 16 16 C 1.46897 * 111.00191 * 213.57793 * 15 14 13 17 17 C 1.50699 * 109.47135 * 176.68625 * 16 15 14 18 18 O 1.21290 * 120.00109 * 6.06520 * 17 16 15 19 19 N 1.34774 * 120.00149 * 186.06480 * 17 16 15 20 20 C 1.37100 * 120.00378 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99500 * 0.02562 * 20 19 17 22 22 C 1.38940 * 120.00056 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00526 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99990 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47260 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47243 * 120.00248 * 24 22 20 27 27 H 1.48501 * 109.47580 * 240.00068 * 24 22 20 28 28 C 1.47442 * 108.56533 * 335.85257 * 15 14 13 29 29 H 1.09000 * 109.47475 * 299.99543 * 1 2 3 30 30 H 1.09007 * 109.47438 * 59.99946 * 1 2 3 31 31 H 1.09000 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46819 * 240.00087 * 2 1 3 33 33 H 1.09001 * 109.47322 * 299.99876 * 3 2 1 34 34 H 1.09000 * 109.47306 * 60.00385 * 3 2 1 35 35 H 1.09005 * 109.47248 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47024 * 179.97438 * 6 4 2 37 37 H 1.09000 * 109.47475 * 300.00304 * 6 4 2 38 38 H 1.09000 * 109.47131 * 59.99989 * 6 4 2 39 39 H 0.96998 * 120.00000 * 359.97438 * 9 7 4 40 40 H 1.09002 * 109.47208 * 60.00413 * 10 9 7 41 41 H 1.08996 * 109.47633 * 299.99957 * 10 9 7 42 42 H 0.96698 * 113.99915 * 303.10168 * 12 11 10 43 43 H 1.09000 * 111.10676 * 87.90388 * 13 11 10 44 44 H 1.09007 * 111.00246 * 324.00113 * 13 11 10 45 45 H 1.08992 * 110.37615 * 278.18246 * 14 13 11 46 46 H 1.09000 * 110.37598 * 155.94615 * 14 13 11 47 47 H 1.08995 * 109.47339 * 296.69461 * 16 15 14 48 48 H 1.09001 * 109.46781 * 56.69070 * 16 15 14 49 49 H 0.97002 * 119.99964 * 0.02562 * 19 17 16 50 50 H 0.97001 * 120.00373 * 179.97438 * 23 22 20 51 51 H 1.09004 * 109.89459 * 120.39395 * 28 15 14 52 52 H 1.09005 * 109.88536 * 241.41879 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2075 2.1392 6 6 3.5700 -0.7218 1.2489 7 6 1.5377 -2.1421 1.2491 8 8 0.8400 -2.5386 0.3397 9 7 1.8629 -2.9718 2.2602 10 6 1.3741 -4.3529 2.2604 11 6 1.8843 -5.0742 3.5096 12 8 1.3863 -4.4457 4.6925 13 6 3.4377 -5.1215 3.5207 14 6 3.7028 -6.3811 4.3825 15 7 2.6348 -7.3313 4.0053 16 6 2.2329 -8.1546 5.1536 17 6 1.0901 -9.0516 4.7530 18 8 0.7256 -9.0899 3.5968 19 7 0.4731 -9.8113 5.6796 20 6 -0.5669 -10.6270 5.3153 21 1 -0.8914 -10.6611 4.2858 22 6 -1.2027 -11.4106 6.2705 23 7 -0.8075 -11.3696 7.5231 24 14 -2.6192 -12.5226 5.7741 25 1 -2.8675 -12.3871 4.3162 26 1 -2.2752 -13.9327 6.0882 27 1 -3.8408 -12.1325 6.5230 28 6 1.4905 -6.5660 3.4773 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4426 0.0005 36 1 3.9333 -1.2353 2.1391 37 1 3.9330 -1.2358 0.3588 38 1 3.9337 0.3057 1.2486 39 1 2.4206 -2.6546 2.9877 40 1 1.7375 -4.8671 1.3706 41 1 0.2842 -4.3526 2.2603 42 1 1.6065 -3.5067 4.7614 43 1 3.8542 -4.2313 3.9919 44 1 3.8320 -5.2483 2.5123 45 1 3.6360 -6.1366 5.4425 46 1 4.6823 -6.7998 4.1513 47 1 3.0769 -8.7637 5.4771 48 1 1.9171 -7.5073 5.9718 49 1 0.7643 -9.7805 6.6043 50 1 -1.2516 -11.9164 8.1900 51 1 1.2808 -6.8720 2.4523 52 1 0.6126 -6.7339 4.1012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569759856.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:32 Heat of formation + Delta-G solvation = -155.825375 kcal Electronic energy + Delta-G solvation = -30650.308672 eV Core-core repulsion = 26455.163407 eV Total energy + Delta-G solvation = -4195.145265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.54995 -40.81816 -39.70567 -37.34297 -36.88094 -35.90213 -35.44403 -33.34748 -32.61530 -31.65793 -30.32641 -28.57814 -28.09310 -26.82521 -25.67867 -24.91274 -22.59402 -21.92040 -21.67960 -20.91956 -20.60013 -19.86500 -18.75403 -18.00382 -17.51940 -17.06873 -16.74386 -16.66983 -16.48963 -16.26014 -15.76093 -15.70296 -15.44703 -15.18391 -14.94306 -14.79136 -14.59055 -14.18792 -13.90771 -13.75148 -13.59380 -13.52975 -13.25006 -13.15715 -13.04419 -12.99683 -12.87510 -12.80767 -12.45880 -12.41804 -12.39935 -12.22744 -12.13131 -11.99988 -11.88639 -11.60086 -11.50515 -11.45035 -11.02693 -10.58373 -10.31325 -10.17414 -10.02622 -9.30253 -8.48748 -5.97467 1.34421 1.39522 1.53984 1.63468 2.02189 2.05962 2.27035 2.79435 3.02062 3.17720 3.24934 3.44667 3.56156 3.64444 3.75294 3.83216 3.96623 4.21243 4.25068 4.28575 4.36826 4.40467 4.48117 4.49835 4.56731 4.57405 4.63013 4.68011 4.72035 4.82654 4.86941 4.94203 4.97532 4.97962 5.04791 5.06023 5.09794 5.13507 5.24140 5.27719 5.39047 5.40184 5.50286 5.60002 5.81755 5.96191 6.09694 6.48728 6.57884 6.72014 7.10521 7.25259 7.53215 8.08814 8.69014 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.002048 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.929445 B =13668.433321 C =14537.355108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.077 4.077 3 C -0.144 4.144 4 C -0.099 4.099 5 H 0.120 0.880 6 C -0.144 4.144 7 C 0.511 3.489 8 O -0.577 6.577 9 N -0.712 5.712 10 C 0.113 3.887 11 C 0.110 3.890 12 O -0.558 6.558 13 C -0.136 4.136 14 C 0.040 3.960 15 N -0.521 5.521 16 C 0.054 3.946 17 C 0.438 3.562 18 O -0.617 6.617 19 N -0.573 5.573 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.275 1.275 26 H -0.269 1.269 27 H -0.270 1.270 28 C 0.077 3.923 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.414 0.586 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.389 0.611 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.113 0.887 48 H 0.063 0.937 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.072 0.928 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.490 27.177 -5.361 30.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.096 4.096 3 C -0.201 4.201 4 C -0.120 4.120 5 H 0.138 0.862 6 C -0.202 4.202 7 C 0.299 3.701 8 O -0.457 6.457 9 N -0.366 5.366 10 C -0.012 4.012 11 C 0.068 3.932 12 O -0.366 6.366 13 C -0.174 4.174 14 C -0.086 4.086 15 N -0.246 5.246 16 C -0.077 4.077 17 C 0.225 3.775 18 O -0.503 6.503 19 N -0.211 5.211 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.200 1.200 26 H -0.194 1.194 27 H -0.196 1.196 28 C -0.051 4.051 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.252 0.748 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.239 0.761 43 H 0.136 0.864 44 H 0.109 0.891 45 H 0.077 0.923 46 H 0.115 0.885 47 H 0.131 0.869 48 H 0.081 0.919 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.090 0.910 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 12.650 25.808 -6.851 29.547 hybrid contribution -0.999 -0.057 1.026 1.433 sum 11.651 25.751 -5.826 28.858 Atomic orbital electron populations 1.22044 0.96004 1.02160 1.01497 1.20901 0.95471 0.96808 0.96464 1.21883 1.01867 0.93888 1.02428 1.21445 0.98872 0.90008 1.01660 0.86240 1.21879 0.90926 1.04444 1.02905 1.21409 0.79021 0.88866 0.80793 1.90668 1.39350 1.78105 1.37542 1.45778 1.53831 1.10989 1.25977 1.21636 0.98900 0.82772 0.97901 1.22622 0.94546 0.92120 0.83916 1.86681 1.79807 1.28754 1.41400 1.23387 0.92735 0.99167 1.02074 1.23210 0.95299 0.91182 0.98947 1.63407 1.08890 1.22380 1.29918 1.21959 0.96801 0.96117 0.92816 1.20782 0.86517 0.84348 0.85846 1.90495 1.68807 1.70520 1.20490 1.41933 1.30618 1.38164 1.10347 1.19683 1.10446 1.20175 0.95886 0.90440 1.26046 1.01315 0.99217 0.94746 1.69678 1.43057 1.41571 1.01769 0.84872 0.77450 0.77842 0.78160 1.19953 1.19381 1.19561 1.22458 0.92994 0.88949 1.00742 0.92435 0.92955 0.93021 0.92620 0.92658 0.91591 0.90958 0.90294 0.93204 0.89178 0.74790 0.91213 0.93021 0.76050 0.86377 0.89051 0.92277 0.88452 0.86918 0.91912 0.77051 0.91264 0.90974 0.95010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 8.87 71.98 0.64 -2.20 16 2 C -0.08 -1.08 2.15 -10.80 -0.02 -1.11 16 3 C -0.14 -1.21 8.84 71.98 0.64 -0.58 16 4 C -0.10 -1.08 2.32 -11.54 -0.03 -1.11 16 5 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 6 C -0.14 -0.88 8.74 71.98 0.63 -0.25 16 7 C 0.51 9.64 6.86 87.66 0.60 10.24 16 8 O -0.58 -16.86 13.66 -3.03 -0.04 -16.90 16 9 N -0.71 -10.46 5.02 -463.06 -2.32 -12.79 16 10 C 0.11 2.56 4.75 86.38 0.41 2.97 16 11 C 0.11 2.49 0.93 -9.51 -0.01 2.48 16 12 O -0.56 -12.09 13.11 -148.98 -1.95 -14.04 16 13 C -0.14 -2.14 5.73 32.08 0.18 -1.96 16 14 C 0.04 0.87 6.71 86.77 0.58 1.45 16 15 N -0.52 -17.21 5.07 -890.10 -4.51 -21.72 16 16 C 0.05 1.99 5.29 85.56 0.45 2.44 16 17 C 0.44 21.77 6.95 87.66 0.61 22.38 16 18 O -0.62 -35.26 14.35 -3.06 -0.04 -35.31 16 19 N -0.57 -30.55 5.29 -307.00 -1.62 -32.17 16 20 C -0.33 -19.46 9.68 84.04 0.81 -18.65 16 21 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 22 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 23 N -0.92 -50.65 13.05 21.66 0.28 -50.36 16 24 Si 0.99 44.12 29.55 68.60 2.03 46.15 16 25 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 28 C 0.08 2.69 4.57 86.65 0.40 3.09 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.05 1.28 5.51 -2.39 -0.01 1.26 16 32 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 33 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.07 0.42 6.43 -2.38 -0.02 0.40 16 36 H 0.08 0.19 7.56 -2.39 -0.02 0.17 16 37 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.09 0.27 6.43 -2.39 -0.02 0.25 16 39 H 0.41 2.75 6.71 -92.71 -0.62 2.13 16 40 H 0.07 1.78 8.09 -2.39 -0.02 1.76 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.39 4.26 8.05 -74.06 -0.60 3.67 16 43 H 0.12 0.89 8.04 -2.39 -0.02 0.87 16 44 H 0.09 1.44 8.05 -2.38 -0.02 1.42 16 45 H 0.06 1.19 7.72 -2.39 -0.02 1.17 16 46 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.11 3.60 8.14 -2.39 -0.02 3.59 16 48 H 0.06 2.15 8.01 -2.39 -0.02 2.13 16 49 H 0.40 20.03 7.90 -92.71 -0.73 19.30 16 50 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 51 H 0.07 2.82 7.69 -2.38 -0.02 2.80 16 52 H 0.03 1.35 6.67 -2.38 -0.02 1.33 16 Total: -1.00 -79.91 408.01 -2.83 -82.75 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: -1.01 Total: 35.48 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 6.36 Total: 18.91 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -8.17 Total: -117.04 kcal Atomic # 8 Polarization: -64.21 SS G_CDS: -2.04 Total: -66.25 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -79.91 -2.83 -82.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569759856.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.079 kcal (2) G-P(sol) polarization free energy of solvation -79.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds