Wall clock time and date at job start Wed Apr 1 2020 00:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.42013 * 2 1 4 4 C 1.54482 * 110.37171 * 237.69818 * 2 1 3 5 5 C 1.54506 * 104.18198 * 217.25905 * 4 2 1 6 6 H 1.09005 * 110.51628 * 118.57407 * 5 4 2 7 7 C 1.50707 * 110.50950 * 241.14617 * 5 4 2 8 8 O 1.21282 * 119.99867 * 19.87721 * 7 5 4 9 9 N 1.34774 * 119.99709 * 199.87910 * 7 5 4 10 10 C 1.46495 * 120.00436 * 5.35117 * 9 7 5 11 11 C 1.46502 * 119.99551 * 185.35343 * 9 7 5 12 12 C 1.53005 * 109.47502 * 89.99844 * 11 9 7 13 13 C 1.52995 * 109.47178 * 179.97438 * 12 11 9 14 14 N 1.46899 * 109.47010 * 179.97438 * 13 12 11 15 15 C 1.46894 * 111.00229 * 293.95852 * 14 13 12 16 16 C 1.46895 * 111.00073 * 169.99865 * 14 13 12 17 17 C 1.50703 * 109.47568 * 190.00490 * 16 14 13 18 18 O 1.21291 * 119.99554 * 359.97438 * 17 16 14 19 19 N 1.34773 * 120.00459 * 180.02562 * 17 16 14 20 20 C 1.37092 * 120.00282 * 179.97438 * 19 17 16 21 21 H 1.08007 * 119.99821 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00427 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99685 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00238 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47123 * 59.99900 * 24 22 20 26 26 H 1.48504 * 109.47048 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46994 * 299.99795 * 24 22 20 28 28 C 1.54480 * 104.06537 * 359.92753 * 5 4 2 29 29 O 1.44429 * 104.79995 * 23.97868 * 28 5 4 30 30 H 1.09004 * 109.47075 * 182.30463 * 1 2 3 31 31 H 1.08995 * 109.46949 * 302.30412 * 1 2 3 32 32 H 1.09002 * 109.47173 * 62.30365 * 1 2 3 33 33 H 1.09000 * 110.51537 * 98.54193 * 4 2 1 34 34 H 1.09004 * 110.50718 * 335.97010 * 4 2 1 35 35 H 1.08994 * 109.47136 * 84.69602 * 10 9 7 36 36 H 1.09000 * 109.47524 * 204.69435 * 10 9 7 37 37 H 1.08999 * 109.47282 * 324.69548 * 10 9 7 38 38 H 1.09000 * 109.47074 * 209.99832 * 11 9 7 39 39 H 1.08998 * 109.47224 * 329.99644 * 11 9 7 40 40 H 1.09000 * 109.46946 * 300.00067 * 12 11 9 41 41 H 1.09005 * 109.46485 * 59.99972 * 12 11 9 42 42 H 1.09000 * 109.47394 * 299.99985 * 13 12 11 43 43 H 1.08998 * 109.47229 * 59.99996 * 13 12 11 44 44 H 1.08991 * 109.47224 * 59.99801 * 15 14 13 45 45 H 1.09002 * 109.47248 * 180.02562 * 15 14 13 46 46 H 1.08997 * 109.46782 * 299.99417 * 15 14 13 47 47 H 1.09004 * 109.47615 * 310.00670 * 16 14 13 48 48 H 1.09003 * 109.47066 * 70.00083 * 16 14 13 49 49 H 0.96998 * 120.00032 * 0.02562 * 19 17 16 50 50 H 0.97006 * 120.00152 * 180.02562 * 23 22 20 51 51 H 1.08993 * 110.37267 * 142.81089 * 28 5 4 52 52 H 1.08995 * 110.36932 * 265.14999 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7739 -1.2241 5 6 3.3172 -1.5083 -0.6886 6 1 3.1928 -2.5877 -0.7764 7 6 4.5513 -1.0585 -1.4276 8 8 4.5469 -0.0065 -2.0311 9 7 5.6596 -1.8253 -1.4177 10 6 5.6296 -3.1481 -0.7890 11 6 6.8944 -1.3357 -2.0356 12 6 7.7200 -0.5772 -0.9944 13 6 9.0098 -0.0666 -1.6397 14 7 9.8021 0.6622 -0.6402 15 6 9.1143 1.8888 -0.2156 16 6 11.1464 0.9623 -1.1508 17 6 12.0053 1.4845 -0.0281 18 8 11.5429 1.5963 1.0876 19 7 13.2869 1.8284 -0.2640 20 6 14.0682 2.3040 0.7573 21 1 13.6567 2.4028 1.7510 22 6 15.3893 2.6590 0.5141 23 7 15.8898 2.5393 -0.6951 24 14 16.4540 3.3064 1.9058 25 1 16.5493 2.2800 2.9747 26 1 17.8124 3.6114 1.3891 27 1 15.8464 4.5430 2.4597 28 6 3.3901 -1.0910 0.7970 29 8 2.0367 -0.7252 1.1442 30 1 -0.3633 -1.0269 0.0413 31 1 -0.3633 0.5492 0.8686 32 1 -0.3634 0.4777 -0.9099 33 1 2.3429 -0.0837 -2.0216 34 1 1.3265 -1.4901 -1.5789 35 1 5.2502 -3.8805 -1.5015 36 1 6.6376 -3.4278 -0.4825 37 1 4.9787 -3.1204 0.0849 38 1 7.4718 -2.1801 -2.4121 39 1 6.6477 -0.6676 -2.8607 40 1 7.1426 0.2672 -0.6179 41 1 7.9667 -1.2455 -0.1694 42 1 9.5870 -0.9112 -2.0159 43 1 8.7634 0.6015 -2.4650 44 1 8.1501 1.6316 0.2227 45 1 9.7228 2.4092 0.5240 46 1 8.9600 2.5362 -1.0788 47 1 11.5919 0.0541 -1.5569 48 1 11.0771 1.7153 -1.9359 49 1 13.6564 1.7401 -1.1565 50 1 16.8123 2.7868 -0.8649 51 1 3.7263 -1.9271 1.4099 52 1 4.0570 -0.2376 0.9190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570200758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:13 Heat of formation + Delta-G solvation = -111.010963 kcal Electronic energy + Delta-G solvation = -29858.860846 eV Core-core repulsion = 25665.658879 eV Total energy + Delta-G solvation = -4193.201966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.95341 -39.09219 -38.59028 -36.89961 -35.89349 -33.88443 -33.00944 -32.49021 -31.49972 -31.18902 -27.98095 -27.39957 -26.71240 -26.17360 -24.90115 -23.64588 -22.41281 -21.51464 -20.73155 -19.36603 -19.09573 -17.99970 -17.81235 -16.90221 -16.19605 -16.13409 -15.83602 -15.61672 -15.53566 -15.30522 -14.91030 -14.59097 -14.26947 -13.98221 -13.71371 -13.62731 -13.54433 -13.31898 -13.23727 -12.92913 -12.89467 -12.42751 -12.39854 -12.23134 -12.00086 -11.98430 -11.82487 -11.58957 -11.44785 -11.27816 -11.21312 -11.18929 -11.16206 -10.88009 -10.56953 -10.42666 -10.19956 -10.19569 -10.09516 -9.44782 -9.03805 -8.41468 -7.95360 -7.81198 -6.39674 -3.80400 2.19125 2.56972 3.21384 3.26797 3.31293 3.42966 3.93268 3.97874 4.03529 4.14008 4.25954 4.27976 4.54176 4.64960 4.71569 4.78403 4.82428 4.91774 4.96552 5.07708 5.13358 5.14271 5.19154 5.20374 5.27097 5.29068 5.30977 5.33256 5.43519 5.52607 5.57055 5.61906 5.63783 5.73846 5.75237 5.79054 5.96076 6.01912 6.03360 6.13823 6.25705 6.32062 6.38951 6.62203 6.97128 7.32317 7.44047 7.56907 7.78924 8.08585 8.64470 9.20287 9.56958 10.09234 10.78045 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.001693 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.889131 B =16537.773189 C =17072.670527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.074 0.926 4 C -0.139 4.139 5 C -0.147 4.147 6 H 0.105 0.895 7 C 0.522 3.478 8 O -0.531 6.531 9 N -0.614 5.614 10 C 0.074 3.926 11 C 0.114 3.886 12 C -0.129 4.129 13 C 0.058 3.942 14 N -0.519 5.519 15 C 0.022 3.978 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.064 3.936 29 O -0.368 6.368 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.013 0.987 47 H 0.087 0.913 48 H 0.047 0.953 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.100 0.900 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.461 -12.161 -5.149 29.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 H 0.092 0.908 4 C -0.177 4.177 5 C -0.168 4.168 6 H 0.123 0.877 7 C 0.309 3.691 8 O -0.408 6.408 9 N -0.347 5.347 10 C -0.069 4.069 11 C -0.008 4.008 12 C -0.168 4.168 13 C -0.071 4.071 14 N -0.242 5.242 15 C -0.126 4.126 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 C -0.014 4.014 29 O -0.287 6.287 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.032 0.968 47 H 0.105 0.895 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.118 0.882 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.628 -11.832 -4.184 29.437 hybrid contribution 1.049 0.634 -0.842 1.487 sum -25.579 -11.198 -5.026 28.371 Atomic orbital electron populations 1.21800 0.92898 1.02948 1.02661 1.23083 0.95417 0.95861 0.84424 0.90849 1.23015 0.95180 1.00023 0.99516 1.22742 0.94113 1.02861 0.97117 0.87692 1.20342 0.84129 0.84073 0.80525 1.90702 1.83340 1.23436 1.43287 1.47838 1.11093 1.17873 1.57889 1.21886 1.03893 0.83328 0.97781 1.21523 0.83892 0.99239 0.96182 1.21922 0.95488 1.00648 0.98767 1.22025 0.94011 0.97999 0.93063 1.61554 1.01393 1.23452 1.37846 1.22550 0.99310 0.90582 1.00145 1.21863 0.89961 1.00625 0.96107 1.19751 0.83173 0.84438 0.89661 1.90480 1.72916 1.58636 1.24134 1.41860 1.09235 1.56916 1.12158 1.19649 0.92315 1.38949 0.91941 0.87989 1.25252 0.97380 0.97792 0.97518 1.69607 1.16068 1.48616 1.20110 0.85919 0.78443 0.79370 0.80485 1.19912 1.21000 1.19955 1.23237 0.85548 1.00666 0.91920 1.89177 1.26511 1.74500 1.38548 0.91734 0.91722 0.90947 0.88466 0.90099 0.92308 0.90101 0.91138 0.90225 0.89747 0.91465 0.90786 0.90865 0.95046 0.92200 0.88696 0.96820 0.89457 0.93526 0.77507 0.91864 0.88213 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.52 37.16 0.35 -0.55 16 2 C 0.07 0.57 3.93 -25.95 -0.10 0.47 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.14 -1.07 6.16 -25.16 -0.16 -1.23 16 5 C -0.15 -1.11 2.53 -90.20 -0.23 -1.34 16 6 H 0.10 0.56 6.99 -51.93 -0.36 0.20 16 7 C 0.52 5.28 6.76 -10.98 -0.07 5.21 16 8 O -0.53 -7.38 15.06 5.56 0.08 -7.29 16 9 N -0.61 -5.18 2.87 -181.57 -0.52 -5.70 16 10 C 0.07 0.37 9.86 59.84 0.59 0.96 16 11 C 0.11 1.05 5.42 -4.04 -0.02 1.03 16 12 C -0.13 -1.47 5.46 -26.73 -0.15 -1.61 16 13 C 0.06 0.75 4.96 -3.83 -0.02 0.73 16 14 N -0.52 -8.89 4.50 -244.38 -1.10 -9.99 16 15 C 0.02 0.38 8.96 60.06 0.54 0.92 16 16 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16 17 C 0.44 10.64 7.48 -10.99 -0.08 10.56 16 18 O -0.58 -15.73 13.91 5.55 0.08 -15.66 16 19 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 20 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 21 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 24 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.06 0.52 6.86 37.93 0.26 0.78 16 29 O -0.37 -3.59 11.35 -35.23 -0.40 -3.99 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.90 6.71 -51.93 -0.35 0.55 16 34 H 0.08 0.49 7.87 -51.93 -0.41 0.08 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.08 0.37 8.03 -51.93 -0.42 -0.05 16 37 H 0.07 0.27 5.88 -51.93 -0.31 -0.03 16 38 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 39 H 0.08 0.90 7.35 -51.93 -0.38 0.52 16 40 H 0.07 0.89 6.55 -51.93 -0.34 0.55 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 43 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 44 H 0.06 0.94 6.47 -51.93 -0.34 0.61 16 45 H 0.09 1.97 5.82 -51.93 -0.30 1.67 16 46 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 47 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 48 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 49 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 50 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 51 H 0.10 0.60 7.54 -51.93 -0.39 0.21 16 52 H 0.07 0.62 7.86 -51.93 -0.41 0.21 16 LS Contribution 413.05 15.07 6.22 6.22 Total: -1.00 -34.16 413.05 -8.23 -42.39 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -8.88 Total: 7.63 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 0.65 Total: 8.69 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.96 Total: -54.16 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.24 Total: -26.94 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.16 -8.23 -42.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570200758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.624 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds