Wall clock time and date at job start Wed Apr 1 2020 00:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.42013 * 2 1 4 4 C 1.54482 * 110.37171 * 237.69818 * 2 1 3 5 5 C 1.54506 * 104.18198 * 217.25905 * 4 2 1 6 6 H 1.09005 * 110.51628 * 118.57407 * 5 4 2 7 7 C 1.50707 * 110.50950 * 241.14617 * 5 4 2 8 8 O 1.21282 * 119.99867 * 19.87721 * 7 5 4 9 9 N 1.34774 * 119.99709 * 199.87910 * 7 5 4 10 10 C 1.46495 * 120.00436 * 5.35117 * 9 7 5 11 11 C 1.46502 * 119.99551 * 185.35343 * 9 7 5 12 12 C 1.53005 * 109.47502 * 89.99844 * 11 9 7 13 13 C 1.52995 * 109.47178 * 179.97438 * 12 11 9 14 14 N 1.46899 * 109.47010 * 179.97438 * 13 12 11 15 15 C 1.46894 * 111.00229 * 293.95852 * 14 13 12 16 16 C 1.46895 * 111.00073 * 169.99865 * 14 13 12 17 17 C 1.50703 * 109.47568 * 190.00490 * 16 14 13 18 18 O 1.21291 * 119.99554 * 359.97438 * 17 16 14 19 19 N 1.34773 * 120.00459 * 180.02562 * 17 16 14 20 20 C 1.37092 * 120.00282 * 179.97438 * 19 17 16 21 21 H 1.08007 * 119.99821 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00427 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99685 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00238 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47123 * 59.99900 * 24 22 20 26 26 H 1.48504 * 109.47048 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46994 * 299.99795 * 24 22 20 28 28 C 1.54480 * 104.06537 * 359.92753 * 5 4 2 29 29 O 1.44429 * 104.79995 * 23.97868 * 28 5 4 30 30 H 1.09004 * 109.47075 * 182.30463 * 1 2 3 31 31 H 1.08995 * 109.46949 * 302.30412 * 1 2 3 32 32 H 1.09002 * 109.47173 * 62.30365 * 1 2 3 33 33 H 1.09000 * 110.51537 * 98.54193 * 4 2 1 34 34 H 1.09004 * 110.50718 * 335.97010 * 4 2 1 35 35 H 1.08994 * 109.47136 * 84.69602 * 10 9 7 36 36 H 1.09000 * 109.47524 * 204.69435 * 10 9 7 37 37 H 1.08999 * 109.47282 * 324.69548 * 10 9 7 38 38 H 1.09000 * 109.47074 * 209.99832 * 11 9 7 39 39 H 1.08998 * 109.47224 * 329.99644 * 11 9 7 40 40 H 1.09000 * 109.46946 * 300.00067 * 12 11 9 41 41 H 1.09005 * 109.46485 * 59.99972 * 12 11 9 42 42 H 1.09000 * 109.47394 * 299.99985 * 13 12 11 43 43 H 1.08998 * 109.47229 * 59.99996 * 13 12 11 44 44 H 1.08991 * 109.47224 * 59.99801 * 15 14 13 45 45 H 1.09002 * 109.47248 * 180.02562 * 15 14 13 46 46 H 1.08997 * 109.46782 * 299.99417 * 15 14 13 47 47 H 1.09004 * 109.47615 * 310.00670 * 16 14 13 48 48 H 1.09003 * 109.47066 * 70.00083 * 16 14 13 49 49 H 0.96998 * 120.00032 * 0.02562 * 19 17 16 50 50 H 0.97006 * 120.00152 * 180.02562 * 23 22 20 51 51 H 1.08993 * 110.37267 * 142.81089 * 28 5 4 52 52 H 1.08995 * 110.36932 * 265.14999 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7739 -1.2241 5 6 3.3172 -1.5083 -0.6886 6 1 3.1928 -2.5877 -0.7764 7 6 4.5513 -1.0585 -1.4276 8 8 4.5469 -0.0065 -2.0311 9 7 5.6596 -1.8253 -1.4177 10 6 5.6296 -3.1481 -0.7890 11 6 6.8944 -1.3357 -2.0356 12 6 7.7200 -0.5772 -0.9944 13 6 9.0098 -0.0666 -1.6397 14 7 9.8021 0.6622 -0.6402 15 6 9.1143 1.8888 -0.2156 16 6 11.1464 0.9623 -1.1508 17 6 12.0053 1.4845 -0.0281 18 8 11.5429 1.5963 1.0876 19 7 13.2869 1.8284 -0.2640 20 6 14.0682 2.3040 0.7573 21 1 13.6567 2.4028 1.7510 22 6 15.3893 2.6590 0.5141 23 7 15.8898 2.5393 -0.6951 24 14 16.4540 3.3064 1.9058 25 1 16.5493 2.2800 2.9747 26 1 17.8124 3.6114 1.3891 27 1 15.8464 4.5430 2.4597 28 6 3.3901 -1.0910 0.7970 29 8 2.0367 -0.7252 1.1442 30 1 -0.3633 -1.0269 0.0413 31 1 -0.3633 0.5492 0.8686 32 1 -0.3634 0.4777 -0.9099 33 1 2.3429 -0.0837 -2.0216 34 1 1.3265 -1.4901 -1.5789 35 1 5.2502 -3.8805 -1.5015 36 1 6.6376 -3.4278 -0.4825 37 1 4.9787 -3.1204 0.0849 38 1 7.4718 -2.1801 -2.4121 39 1 6.6477 -0.6676 -2.8607 40 1 7.1426 0.2672 -0.6179 41 1 7.9667 -1.2455 -0.1694 42 1 9.5870 -0.9112 -2.0159 43 1 8.7634 0.6015 -2.4650 44 1 8.1501 1.6316 0.2227 45 1 9.7228 2.4092 0.5240 46 1 8.9600 2.5362 -1.0788 47 1 11.5919 0.0541 -1.5569 48 1 11.0771 1.7153 -1.9359 49 1 13.6564 1.7401 -1.1565 50 1 16.8123 2.7868 -0.8649 51 1 3.7263 -1.9271 1.4099 52 1 4.0570 -0.2376 0.9190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570200758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:10 Heat of formation + Delta-G solvation = -136.094586 kcal Electronic energy + Delta-G solvation = -29859.948553 eV Core-core repulsion = 25665.658879 eV Total energy + Delta-G solvation = -4194.289674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.65660 -40.40414 -39.74158 -38.23936 -36.81120 -35.87820 -33.82459 -33.28850 -33.13931 -32.26329 -29.45259 -28.21654 -27.41246 -27.04416 -26.54146 -24.79323 -23.25493 -22.22989 -21.78359 -20.98460 -20.03565 -19.83889 -18.66742 -17.90081 -17.49690 -16.90048 -16.75678 -16.63570 -16.57304 -16.34443 -16.20147 -16.04885 -15.73941 -15.28452 -15.02658 -14.83815 -14.44541 -14.22235 -14.12680 -13.77903 -13.49756 -13.47112 -13.41117 -13.17089 -13.05406 -12.97942 -12.93854 -12.82641 -12.63405 -12.54042 -12.43661 -12.41495 -12.29471 -12.11915 -11.86281 -11.80088 -11.55145 -11.45325 -10.89463 -10.88075 -10.29261 -9.99866 -9.71550 -9.23752 -8.45929 -5.94625 1.39740 1.41402 1.44170 1.52381 1.92087 2.05923 2.28887 2.76912 2.83268 3.20677 3.37318 3.41862 3.55824 3.66808 3.91972 3.97829 4.07277 4.12449 4.14959 4.17715 4.27253 4.36356 4.36989 4.39997 4.45306 4.52074 4.56365 4.58606 4.59537 4.62875 4.69503 4.73335 4.79008 4.80777 4.89031 4.93489 4.97527 5.03026 5.06352 5.13472 5.24759 5.26650 5.41216 5.52540 5.75435 5.87955 6.05228 6.19998 6.31465 6.61571 7.06612 7.13545 7.57068 8.13308 8.71192 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.001693 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.889131 B =16537.773189 C =17072.670527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.063 3.937 3 H 0.056 0.944 4 C -0.137 4.137 5 C -0.139 4.139 6 H 0.137 0.863 7 C 0.516 3.484 8 O -0.579 6.579 9 N -0.612 5.612 10 C 0.066 3.934 11 C 0.119 3.881 12 C -0.118 4.118 13 C 0.060 3.940 14 N -0.536 5.536 15 C 0.030 3.970 16 C 0.057 3.943 17 C 0.440 3.560 18 O -0.615 6.615 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.062 3.938 29 O -0.384 6.384 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.041 0.959 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.037 0.963 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.023 0.977 47 H 0.115 0.885 48 H 0.064 0.936 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.125 0.875 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.945 -14.382 -5.861 31.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.006 3.994 3 H 0.074 0.926 4 C -0.175 4.175 5 C -0.160 4.160 6 H 0.154 0.846 7 C 0.304 3.696 8 O -0.459 6.459 9 N -0.343 5.343 10 C -0.076 4.076 11 C -0.004 4.004 12 C -0.157 4.157 13 C -0.068 4.068 14 N -0.260 5.260 15 C -0.118 4.118 16 C -0.074 4.074 17 C 0.228 3.772 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.015 4.015 29 O -0.303 6.303 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.055 0.945 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.041 0.959 47 H 0.133 0.867 48 H 0.082 0.918 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.143 0.857 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -27.114 -14.095 -4.912 30.951 hybrid contribution 1.163 1.307 -0.617 1.856 sum -25.951 -12.788 -5.529 29.454 Atomic orbital electron populations 1.21798 0.91234 1.03594 1.03246 1.23182 0.96778 0.95044 0.84443 0.92617 1.22994 0.95826 1.00080 0.98589 1.22764 0.92702 1.04511 0.96066 0.84554 1.20814 0.85169 0.83518 0.80072 1.90680 1.84244 1.25511 1.45454 1.47961 1.10224 1.18846 1.57297 1.22173 1.05014 0.81689 0.98697 1.21440 0.84257 0.99814 0.94913 1.21799 0.94768 0.99874 0.99255 1.22130 0.94240 0.98264 0.92187 1.61526 1.01397 1.23299 1.39806 1.22367 0.98940 0.90935 0.99558 1.21756 0.89764 1.02016 0.93837 1.20789 0.82929 0.82852 0.90650 1.90459 1.73584 1.59758 1.26359 1.41924 1.09881 1.57496 1.11854 1.19620 0.93578 1.41267 0.91883 0.90380 1.26025 0.97899 0.97331 0.99973 1.69667 1.16607 1.48494 1.21326 0.84995 0.77131 0.78592 0.77642 1.19677 1.19423 1.19880 1.23309 0.84666 1.00679 0.92839 1.89161 1.27131 1.74606 1.39397 0.90909 0.91994 0.89634 0.90401 0.87912 0.90268 0.89301 0.89778 0.87309 0.91401 0.93981 0.90859 0.88509 0.94505 0.91185 0.92549 0.95872 0.86688 0.91815 0.77011 0.91314 0.85747 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.52 71.98 0.69 -0.93 16 2 C 0.06 1.03 3.93 31.10 0.12 1.15 16 3 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.14 -2.00 6.16 31.61 0.19 -1.81 16 5 C -0.14 -1.90 2.53 -10.52 -0.03 -1.92 16 6 H 0.14 0.99 6.99 -2.38 -0.02 0.97 16 7 C 0.52 10.09 6.76 87.66 0.59 10.68 16 8 O -0.58 -16.54 15.06 -3.04 -0.05 -16.59 16 9 N -0.61 -9.19 2.87 -846.76 -2.43 -11.63 16 10 C 0.07 0.44 9.86 127.77 1.26 1.70 16 11 C 0.12 1.98 5.42 86.38 0.47 2.44 16 12 C -0.12 -2.53 5.46 30.59 0.17 -2.37 16 13 C 0.06 1.42 4.96 86.30 0.43 1.84 16 14 N -0.54 -17.90 4.50 -927.10 -4.17 -22.07 16 15 C 0.03 1.06 8.96 127.69 1.14 2.21 16 16 C 0.06 2.03 5.45 85.56 0.47 2.50 16 17 C 0.44 21.37 7.48 87.66 0.66 22.03 16 18 O -0.62 -34.61 13.91 -3.06 -0.04 -34.65 16 19 N -0.57 -29.86 5.29 -306.99 -1.62 -31.48 16 20 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 21 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 23 N -0.92 -49.91 13.05 21.66 0.28 -49.63 16 24 Si 0.99 43.31 29.55 68.60 2.03 45.33 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 C 0.06 0.96 6.86 72.49 0.50 1.45 16 29 O -0.38 -7.24 11.35 -148.98 -1.69 -8.94 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 1.48 6.71 -2.39 -0.02 1.46 16 34 H 0.10 1.02 7.87 -2.38 -0.02 1.00 16 35 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.09 0.50 8.03 -2.39 -0.02 0.48 16 37 H 0.08 0.35 5.88 -2.39 -0.01 0.34 16 38 H 0.11 1.19 8.07 -2.39 -0.02 1.17 16 39 H 0.07 1.39 7.35 -2.39 -0.02 1.37 16 40 H 0.04 1.12 6.55 -2.39 -0.02 1.10 16 41 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.10 1.87 7.93 -2.39 -0.02 1.85 16 43 H 0.04 0.86 8.12 -2.39 -0.02 0.84 16 44 H 0.07 2.27 6.47 -2.39 -0.02 2.25 16 45 H 0.06 2.43 5.82 -2.39 -0.01 2.42 16 46 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.12 3.45 7.93 -2.39 -0.02 3.44 16 48 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 49 H 0.40 19.50 7.90 -92.71 -0.73 18.77 16 50 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 51 H 0.12 1.23 7.54 -2.39 -0.02 1.21 16 52 H 0.04 0.85 7.86 -2.39 -0.02 0.84 16 Total: -1.00 -76.75 413.05 0.42 -76.33 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 0.18 Total: 32.92 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 7.94 Total: 20.40 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -7.94 Total: -114.81 kcal Atomic # 8 Polarization: -58.40 SS G_CDS: -1.78 Total: -60.18 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -76.75 0.42 -76.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570200758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.763 kcal (2) G-P(sol) polarization free energy of solvation -76.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds