Wall clock time and date at job start Wed Apr 1 2020 00:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 110.41949 * 2 1 4 4 C 1.54479 * 110.37378 * 237.69217 * 2 1 3 5 5 C 1.54517 * 104.06037 * 217.18898 * 4 2 1 6 6 H 1.08995 * 110.50736 * 241.21139 * 5 4 2 7 7 C 1.50706 * 110.50766 * 118.64504 * 5 4 2 8 8 O 1.21271 * 120.00227 * 359.97438 * 7 5 4 9 9 N 1.34777 * 119.99415 * 179.97438 * 7 5 4 10 10 C 1.46497 * 120.00283 * 0.02562 * 9 7 5 11 11 C 1.46506 * 119.99644 * 179.97438 * 9 7 5 12 12 C 1.53000 * 109.46963 * 90.00399 * 11 9 7 13 13 C 1.52999 * 109.47232 * 180.02562 * 12 11 9 14 14 N 1.46900 * 109.47093 * 179.97438 * 13 12 11 15 15 C 1.46896 * 110.99863 * 293.95412 * 14 13 12 16 16 C 1.46897 * 110.99843 * 169.99631 * 14 13 12 17 17 C 1.50704 * 109.46942 * 189.99781 * 16 14 13 18 18 O 1.21287 * 120.00226 * 0.02562 * 17 16 14 19 19 N 1.34779 * 119.99838 * 180.02562 * 17 16 14 20 20 C 1.37090 * 119.99958 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00249 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00082 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99745 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00031 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47045 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47316 * 120.00038 * 24 22 20 27 27 H 1.48498 * 109.46993 * 240.00277 * 24 22 20 28 28 C 1.54481 * 104.06349 * 0.02562 * 5 4 2 29 29 O 1.44422 * 104.80535 * 23.97783 * 28 5 4 30 30 H 1.09001 * 109.47320 * 182.30787 * 1 2 3 31 31 H 1.09005 * 109.47541 * 302.30989 * 1 2 3 32 32 H 1.09005 * 109.47229 * 62.31049 * 1 2 3 33 33 H 1.08991 * 110.51153 * 98.54483 * 4 2 1 34 34 H 1.08995 * 110.50884 * 335.83266 * 4 2 1 35 35 H 1.08997 * 109.47218 * 90.00240 * 10 9 7 36 36 H 1.09000 * 109.46916 * 210.00022 * 10 9 7 37 37 H 1.08998 * 109.47299 * 329.99798 * 10 9 7 38 38 H 1.09003 * 109.46863 * 210.00105 * 11 9 7 39 39 H 1.08997 * 109.47023 * 330.00702 * 11 9 7 40 40 H 1.09005 * 109.47140 * 300.00104 * 12 11 9 41 41 H 1.08998 * 109.47006 * 59.99505 * 12 11 9 42 42 H 1.09003 * 109.46612 * 299.99717 * 13 12 11 43 43 H 1.08998 * 109.46738 * 59.99674 * 13 12 11 44 44 H 1.08997 * 109.47674 * 60.00296 * 15 14 13 45 45 H 1.09000 * 109.47337 * 180.02562 * 15 14 13 46 46 H 1.09003 * 109.47249 * 299.99715 * 15 14 13 47 47 H 1.08993 * 109.47575 * 310.00131 * 16 14 13 48 48 H 1.09000 * 109.46713 * 70.00163 * 16 14 13 49 49 H 0.96999 * 120.00068 * 359.97438 * 19 17 16 50 50 H 0.97001 * 119.99507 * 179.97438 * 23 22 20 51 51 H 1.08995 * 110.37274 * 142.81171 * 28 5 4 52 52 H 1.08999 * 110.36722 * 265.03812 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0677 -0.7740 -1.2240 5 6 3.3178 -1.5056 -0.6858 6 1 4.2105 -1.1790 -1.2191 7 6 3.1487 -2.9983 -0.8065 8 8 2.1293 -3.4571 -1.2766 9 7 4.1306 -3.8233 -0.3920 10 6 5.3618 -3.2691 0.1765 11 6 3.9661 -5.2744 -0.5088 12 6 4.4976 -5.7403 -1.8657 13 6 4.3253 -7.2556 -1.9880 14 7 4.8351 -7.7028 -3.2911 15 6 4.0171 -7.1684 -4.3880 16 6 4.9065 -9.1687 -3.3535 17 6 5.6555 -9.5828 -4.5939 18 8 6.0877 -8.7397 -5.3512 19 7 5.8451 -10.8900 -4.8618 20 6 6.5268 -11.2667 -5.9899 21 1 6.9124 -10.5160 -6.6639 22 6 6.7228 -12.6144 -6.2658 23 7 6.2550 -13.5279 -5.4451 24 14 7.6523 -13.1277 -7.8027 25 1 8.0735 -11.9177 -8.5536 26 1 8.8523 -13.9126 -7.4164 27 1 6.7707 -13.9606 -8.6594 28 6 3.3869 -1.0876 0.7998 29 8 2.0322 -0.7245 1.1444 30 1 -0.3634 -1.0268 0.0414 31 1 -0.3634 0.5493 0.8686 32 1 -0.3634 0.4776 -0.9100 33 1 2.3429 -0.0839 -2.0214 34 1 1.3276 -1.4919 -1.5772 35 1 5.2473 -3.1603 1.2549 36 1 6.1939 -3.9408 -0.0346 37 1 5.5604 -2.2939 -0.2680 38 1 4.5219 -5.7683 0.2883 39 1 2.9093 -5.5280 -0.4260 40 1 3.9419 -5.2462 -2.6627 41 1 5.5544 -5.4865 -1.9485 42 1 4.8808 -7.7499 -1.1910 43 1 3.2683 -7.5088 -1.9053 44 1 4.0383 -6.0790 -4.3597 45 1 4.4162 -7.5152 -5.3412 46 1 2.9896 -7.5148 -4.2771 47 1 5.4265 -9.5450 -2.4725 48 1 3.8978 -9.5806 -3.3836 49 1 5.4998 -11.5643 -4.2560 50 1 6.3914 -14.4687 -5.6379 51 1 3.7237 -1.9228 1.4137 52 1 4.0534 -0.2340 0.9230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570200759.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:25 Heat of formation + Delta-G solvation = -109.198619 kcal Electronic energy + Delta-G solvation = -29827.788384 eV Core-core repulsion = 25634.665007 eV Total energy + Delta-G solvation = -4193.123377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.00201 -39.04488 -38.57261 -36.87085 -35.89074 -33.88394 -33.02355 -32.53515 -31.42670 -31.17572 -27.97947 -27.41661 -26.66764 -26.14430 -24.90092 -23.71370 -22.42072 -21.42476 -20.70690 -19.40694 -19.09237 -17.81165 -17.64208 -16.95994 -16.77339 -16.11277 -15.91910 -15.58822 -15.41529 -15.23759 -14.80176 -14.60001 -14.32744 -13.92651 -13.72217 -13.53294 -13.49661 -13.35873 -13.20820 -12.81163 -12.74985 -12.64841 -12.24648 -12.15070 -11.97453 -11.93299 -11.64081 -11.57692 -11.54781 -11.44115 -11.22021 -11.20464 -11.14889 -10.89752 -10.55201 -10.37022 -10.32758 -10.20358 -9.89687 -9.46418 -9.00374 -8.40592 -7.94953 -7.79987 -6.39659 -3.80197 2.29411 2.61252 3.17606 3.27921 3.35248 3.41832 3.91707 3.93785 4.02609 4.10389 4.28341 4.36263 4.48829 4.59421 4.72389 4.80959 4.86093 4.92532 4.98239 5.01246 5.07116 5.10968 5.16323 5.23501 5.27786 5.28399 5.31534 5.34485 5.39308 5.52146 5.56247 5.66231 5.73881 5.77082 5.80763 5.84811 5.99072 6.03688 6.05804 6.16730 6.28771 6.33090 6.38672 6.63608 7.02238 7.34012 7.45657 7.57503 7.86206 8.09334 8.64770 9.20736 9.57427 10.09607 10.78277 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032440 B = 0.001588 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.923160 B =17628.732521 C =17828.442169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 H 0.070 0.930 4 C -0.144 4.144 5 C -0.147 4.147 6 H 0.111 0.889 7 C 0.523 3.477 8 O -0.529 6.529 9 N -0.615 5.615 10 C 0.072 3.928 11 C 0.116 3.884 12 C -0.129 4.129 13 C 0.058 3.942 14 N -0.519 5.519 15 C 0.022 3.978 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.566 5.566 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.055 3.945 29 O -0.368 6.368 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.013 0.987 47 H 0.087 0.913 48 H 0.047 0.953 49 H 0.392 0.608 50 H 0.270 0.730 51 H 0.096 0.904 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 25.060 16.020 30.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 H 0.088 0.912 4 C -0.182 4.182 5 C -0.169 4.169 6 H 0.129 0.871 7 C 0.311 3.689 8 O -0.405 6.405 9 N -0.348 5.348 10 C -0.071 4.071 11 C -0.007 4.007 12 C -0.168 4.168 13 C -0.071 4.071 14 N -0.243 5.243 15 C -0.126 4.126 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.022 4.022 29 O -0.287 6.287 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.032 0.968 47 H 0.105 0.895 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.114 0.886 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.346 25.301 15.386 30.284 hybrid contribution -0.195 -1.114 -0.417 1.205 sum -6.541 24.187 14.969 29.187 Atomic orbital electron populations 1.21802 0.92910 1.03376 1.02370 1.23043 0.95791 0.95085 0.84737 0.91231 1.23095 0.96976 0.99879 0.98272 1.22717 1.01650 0.93301 0.99193 0.87089 1.20285 0.82878 0.88498 0.77251 1.90685 1.28273 1.77321 1.44191 1.47809 1.17502 1.06941 1.62561 1.21937 0.86684 1.00111 0.98331 1.21501 1.02781 0.78627 0.97757 1.21910 1.02274 0.95659 0.96930 1.22030 0.97861 0.95007 0.92211 1.61560 1.52194 1.08515 1.01989 1.22550 0.93626 0.99659 0.96750 1.21864 0.99394 0.88195 0.99124 1.19759 0.85710 0.83362 0.88131 1.90479 1.54309 1.50535 1.50818 1.41877 1.49876 1.05186 1.23318 1.19751 1.30520 0.92038 1.00411 0.87882 1.25258 0.98101 0.95470 0.99186 1.69623 1.46295 1.01264 1.37209 0.85803 0.78879 0.78686 0.80987 1.19246 1.20779 1.20804 1.23439 0.85653 1.00354 0.92760 1.89186 1.26518 1.74552 1.38423 0.91418 0.91921 0.90982 0.89965 0.87906 0.92266 0.90264 0.90976 0.90277 0.89846 0.91373 0.90886 0.90894 0.95035 0.92177 0.88734 0.96810 0.89451 0.93518 0.77508 0.91972 0.88582 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.52 37.15 0.35 -0.67 16 2 C 0.07 0.53 3.92 -25.96 -0.10 0.43 16 3 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 4 C -0.14 -1.12 6.22 -25.16 -0.16 -1.28 16 5 C -0.15 -1.09 2.57 -90.20 -0.23 -1.32 16 6 H 0.11 0.57 7.30 -51.93 -0.38 0.19 16 7 C 0.52 5.59 6.99 -10.98 -0.08 5.51 16 8 O -0.53 -7.77 14.86 5.57 0.08 -7.69 16 9 N -0.62 -5.42 2.85 -181.57 -0.52 -5.94 16 10 C 0.07 0.37 9.10 59.85 0.54 0.91 16 11 C 0.12 1.12 5.41 -4.04 -0.02 1.10 16 12 C -0.13 -1.51 5.46 -26.73 -0.15 -1.66 16 13 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 14 N -0.52 -9.01 4.50 -244.38 -1.10 -10.11 16 15 C 0.02 0.39 8.96 60.06 0.54 0.92 16 16 C 0.05 0.84 5.45 -4.98 -0.03 0.82 16 17 C 0.44 10.70 7.47 -10.98 -0.08 10.62 16 18 O -0.58 -15.79 13.91 5.55 0.08 -15.71 16 19 N -0.57 -14.53 5.29 -10.96 -0.06 -14.59 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 21 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 24 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 28 C 0.06 0.36 6.44 37.93 0.24 0.61 16 29 O -0.37 -3.49 11.34 -35.23 -0.40 -3.89 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 1.06 6.23 -51.93 -0.32 0.74 16 35 H 0.06 0.22 7.13 -51.93 -0.37 -0.15 16 36 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 37 H 0.07 0.26 6.25 -51.93 -0.32 -0.07 16 38 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 39 H 0.08 0.94 7.42 -51.93 -0.39 0.55 16 40 H 0.07 0.94 6.55 -51.93 -0.34 0.60 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 43 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 44 H 0.06 0.96 6.47 -51.93 -0.34 0.63 16 45 H 0.09 1.97 5.82 -51.93 -0.30 1.67 16 46 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.09 1.44 7.93 -51.93 -0.41 1.03 16 48 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 49 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 50 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 51 H 0.10 0.59 5.92 -51.93 -0.31 0.28 16 52 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 410.16 15.07 6.18 6.18 Total: -1.00 -34.94 410.16 -8.25 -43.19 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -8.79 Total: 7.71 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 0.58 Total: 8.69 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.95 Total: -54.66 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.24 Total: -27.29 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.94 -8.25 -43.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570200759.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.011 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds