Wall clock time and date at job start Wed Apr 1 2020 00:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 110.41949 * 2 1 4 4 C 1.54479 * 110.37378 * 237.69217 * 2 1 3 5 5 C 1.54517 * 104.06037 * 217.18898 * 4 2 1 6 6 H 1.08995 * 110.50736 * 241.21139 * 5 4 2 7 7 C 1.50706 * 110.50766 * 118.64504 * 5 4 2 8 8 O 1.21271 * 120.00227 * 359.97438 * 7 5 4 9 9 N 1.34777 * 119.99415 * 179.97438 * 7 5 4 10 10 C 1.46497 * 120.00283 * 0.02562 * 9 7 5 11 11 C 1.46506 * 119.99644 * 179.97438 * 9 7 5 12 12 C 1.53000 * 109.46963 * 90.00399 * 11 9 7 13 13 C 1.52999 * 109.47232 * 180.02562 * 12 11 9 14 14 N 1.46900 * 109.47093 * 179.97438 * 13 12 11 15 15 C 1.46896 * 110.99863 * 293.95412 * 14 13 12 16 16 C 1.46897 * 110.99843 * 169.99631 * 14 13 12 17 17 C 1.50704 * 109.46942 * 189.99781 * 16 14 13 18 18 O 1.21287 * 120.00226 * 0.02562 * 17 16 14 19 19 N 1.34779 * 119.99838 * 180.02562 * 17 16 14 20 20 C 1.37090 * 119.99958 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00249 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00082 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99745 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00031 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47045 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47316 * 120.00038 * 24 22 20 27 27 H 1.48498 * 109.46993 * 240.00277 * 24 22 20 28 28 C 1.54481 * 104.06349 * 0.02562 * 5 4 2 29 29 O 1.44422 * 104.80535 * 23.97783 * 28 5 4 30 30 H 1.09001 * 109.47320 * 182.30787 * 1 2 3 31 31 H 1.09005 * 109.47541 * 302.30989 * 1 2 3 32 32 H 1.09005 * 109.47229 * 62.31049 * 1 2 3 33 33 H 1.08991 * 110.51153 * 98.54483 * 4 2 1 34 34 H 1.08995 * 110.50884 * 335.83266 * 4 2 1 35 35 H 1.08997 * 109.47218 * 90.00240 * 10 9 7 36 36 H 1.09000 * 109.46916 * 210.00022 * 10 9 7 37 37 H 1.08998 * 109.47299 * 329.99798 * 10 9 7 38 38 H 1.09003 * 109.46863 * 210.00105 * 11 9 7 39 39 H 1.08997 * 109.47023 * 330.00702 * 11 9 7 40 40 H 1.09005 * 109.47140 * 300.00104 * 12 11 9 41 41 H 1.08998 * 109.47006 * 59.99505 * 12 11 9 42 42 H 1.09003 * 109.46612 * 299.99717 * 13 12 11 43 43 H 1.08998 * 109.46738 * 59.99674 * 13 12 11 44 44 H 1.08997 * 109.47674 * 60.00296 * 15 14 13 45 45 H 1.09000 * 109.47337 * 180.02562 * 15 14 13 46 46 H 1.09003 * 109.47249 * 299.99715 * 15 14 13 47 47 H 1.08993 * 109.47575 * 310.00131 * 16 14 13 48 48 H 1.09000 * 109.46713 * 70.00163 * 16 14 13 49 49 H 0.96999 * 120.00068 * 359.97438 * 19 17 16 50 50 H 0.97001 * 119.99507 * 179.97438 * 23 22 20 51 51 H 1.08995 * 110.37274 * 142.81171 * 28 5 4 52 52 H 1.08999 * 110.36722 * 265.03812 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0677 -0.7740 -1.2240 5 6 3.3178 -1.5056 -0.6858 6 1 4.2105 -1.1790 -1.2191 7 6 3.1487 -2.9983 -0.8065 8 8 2.1293 -3.4571 -1.2766 9 7 4.1306 -3.8233 -0.3920 10 6 5.3618 -3.2691 0.1765 11 6 3.9661 -5.2744 -0.5088 12 6 4.4976 -5.7403 -1.8657 13 6 4.3253 -7.2556 -1.9880 14 7 4.8351 -7.7028 -3.2911 15 6 4.0171 -7.1684 -4.3880 16 6 4.9065 -9.1687 -3.3535 17 6 5.6555 -9.5828 -4.5939 18 8 6.0877 -8.7397 -5.3512 19 7 5.8451 -10.8900 -4.8618 20 6 6.5268 -11.2667 -5.9899 21 1 6.9124 -10.5160 -6.6639 22 6 6.7228 -12.6144 -6.2658 23 7 6.2550 -13.5279 -5.4451 24 14 7.6523 -13.1277 -7.8027 25 1 8.0735 -11.9177 -8.5536 26 1 8.8523 -13.9126 -7.4164 27 1 6.7707 -13.9606 -8.6594 28 6 3.3869 -1.0876 0.7998 29 8 2.0322 -0.7245 1.1444 30 1 -0.3634 -1.0268 0.0414 31 1 -0.3634 0.5493 0.8686 32 1 -0.3634 0.4776 -0.9100 33 1 2.3429 -0.0839 -2.0214 34 1 1.3276 -1.4919 -1.5772 35 1 5.2473 -3.1603 1.2549 36 1 6.1939 -3.9408 -0.0346 37 1 5.5604 -2.2939 -0.2680 38 1 4.5219 -5.7683 0.2883 39 1 2.9093 -5.5280 -0.4260 40 1 3.9419 -5.2462 -2.6627 41 1 5.5544 -5.4865 -1.9485 42 1 4.8808 -7.7499 -1.1910 43 1 3.2683 -7.5088 -1.9053 44 1 4.0383 -6.0790 -4.3597 45 1 4.4162 -7.5152 -5.3412 46 1 2.9896 -7.5148 -4.2771 47 1 5.4265 -9.5450 -2.4725 48 1 3.8978 -9.5806 -3.3836 49 1 5.4998 -11.5643 -4.2560 50 1 6.3914 -14.4687 -5.6379 51 1 3.7237 -1.9228 1.4137 52 1 4.0534 -0.2340 0.9230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570200759.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:22 Heat of formation + Delta-G solvation = -135.304924 kcal Electronic energy + Delta-G solvation = -29828.920438 eV Core-core repulsion = 25634.665007 eV Total energy + Delta-G solvation = -4194.255431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.67152 -40.40741 -39.64930 -38.23040 -36.82336 -35.88410 -33.83254 -33.28804 -33.14975 -32.16481 -29.45521 -28.25076 -27.40301 -27.00089 -26.50787 -24.81255 -23.28664 -22.06771 -21.78231 -20.99020 -20.07313 -19.84398 -18.27262 -17.90283 -17.57379 -17.36382 -16.73021 -16.62188 -16.59903 -16.47163 -16.01365 -15.86904 -15.71836 -15.26091 -15.05066 -14.86141 -14.46413 -14.10492 -14.06596 -13.78874 -13.50162 -13.38061 -13.28473 -13.24782 -13.09116 -12.97355 -12.92115 -12.72447 -12.59450 -12.53716 -12.39506 -12.30235 -12.19415 -12.13434 -12.11157 -11.74368 -11.56308 -11.46601 -11.04930 -10.56731 -10.29558 -9.99967 -9.70712 -9.24370 -8.46499 -5.95056 1.36462 1.41544 1.54193 1.55890 1.95330 2.05356 2.28779 2.77981 2.90956 3.20223 3.34170 3.41256 3.53488 3.83740 3.93619 3.99988 4.08335 4.13228 4.14697 4.27567 4.34371 4.36431 4.40087 4.42906 4.47641 4.51592 4.54792 4.57903 4.58518 4.62271 4.69700 4.73425 4.79037 4.79524 4.85858 4.96170 4.99342 5.02209 5.13271 5.16205 5.25543 5.28472 5.41492 5.53766 5.86964 5.87915 6.05081 6.19324 6.35039 6.61188 7.12210 7.13413 7.56717 8.12837 8.71183 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032440 B = 0.001588 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.923160 B =17628.732521 C =17828.442169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.069 3.931 3 H 0.094 0.906 4 C -0.147 4.147 5 C -0.143 4.143 6 H 0.140 0.860 7 C 0.512 3.488 8 O -0.582 6.582 9 N -0.614 5.614 10 C 0.064 3.936 11 C 0.120 3.880 12 C -0.116 4.116 13 C 0.060 3.940 14 N -0.535 5.535 15 C 0.030 3.970 16 C 0.057 3.943 17 C 0.441 3.559 18 O -0.615 6.615 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.055 3.945 29 O -0.399 6.399 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.022 0.978 47 H 0.115 0.885 48 H 0.064 0.936 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.098 0.902 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.212 26.077 17.537 31.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.012 3.988 3 H 0.112 0.888 4 C -0.185 4.185 5 C -0.164 4.164 6 H 0.158 0.842 7 C 0.301 3.699 8 O -0.462 6.462 9 N -0.345 5.345 10 C -0.078 4.078 11 C -0.003 4.003 12 C -0.155 4.155 13 C -0.068 4.068 14 N -0.260 5.260 15 C -0.118 4.118 16 C -0.074 4.074 17 C 0.229 3.771 18 O -0.501 6.501 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.021 4.021 29 O -0.318 6.318 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.054 0.946 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.041 0.959 47 H 0.133 0.867 48 H 0.082 0.918 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.117 0.883 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.070 26.320 16.951 31.714 hybrid contribution -0.594 -1.396 -0.855 1.741 sum -5.665 24.924 16.096 30.206 Atomic orbital electron populations 1.21825 0.93277 1.02031 1.03396 1.23187 0.95716 0.95942 0.83949 0.88779 1.23092 0.96561 0.99671 0.99158 1.22791 1.02490 0.90712 1.00417 0.84229 1.20978 0.82400 0.90115 0.76399 1.90662 1.30448 1.78434 1.46672 1.47946 1.18354 1.06456 1.61761 1.22241 0.84984 1.01074 0.99477 1.21406 1.01875 0.79733 0.97313 1.21773 1.01836 0.94512 0.97390 1.22131 0.98307 0.95934 0.90454 1.61536 1.53027 1.07743 1.03670 1.22371 0.93805 1.00239 0.95381 1.21760 0.99575 0.89233 0.96847 1.20775 0.84770 0.82386 0.89218 1.90457 1.55689 1.51396 1.52565 1.41938 1.50210 1.06025 1.23035 1.19697 1.32545 0.92314 1.01633 0.90365 1.26037 0.98397 0.94910 1.01949 1.69680 1.46455 1.01706 1.38334 0.84863 0.77995 0.78043 0.77373 1.19864 1.19506 1.19677 1.23636 0.84986 1.01723 0.91778 1.89154 1.28203 1.75087 1.39391 0.93874 0.91394 0.89496 0.87886 0.91179 0.90376 0.89607 0.89055 0.87427 0.91859 0.93932 0.90848 0.88553 0.94638 0.91154 0.92475 0.95930 0.86706 0.91845 0.77020 0.91326 0.88344 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.52 71.98 0.68 -1.37 16 2 C 0.07 0.94 3.92 31.09 0.12 1.06 16 3 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.15 -2.18 6.22 31.61 0.20 -1.98 16 5 C -0.14 -1.86 2.57 -10.52 -0.03 -1.89 16 6 H 0.14 0.97 7.30 -2.39 -0.02 0.96 16 7 C 0.51 10.72 6.99 87.66 0.61 11.33 16 8 O -0.58 -17.94 14.86 -3.00 -0.04 -17.99 16 9 N -0.61 -9.88 2.85 -846.76 -2.42 -12.30 16 10 C 0.06 0.45 9.10 127.77 1.16 1.61 16 11 C 0.12 2.16 5.41 86.38 0.47 2.63 16 12 C -0.12 -2.61 5.46 30.59 0.17 -2.44 16 13 C 0.06 1.47 4.96 86.30 0.43 1.90 16 14 N -0.54 -18.17 4.50 -927.07 -4.17 -22.34 16 15 C 0.03 1.08 8.96 127.69 1.14 2.22 16 16 C 0.06 2.04 5.45 85.56 0.47 2.51 16 17 C 0.44 21.51 7.47 87.66 0.66 22.17 16 18 O -0.61 -34.69 13.91 -3.05 -0.04 -34.73 16 19 N -0.57 -30.00 5.29 -306.98 -1.62 -31.63 16 20 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 23 N -0.92 -50.08 13.05 21.66 0.28 -49.79 16 24 Si 0.99 43.37 29.55 68.60 2.03 45.39 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 28 C 0.06 0.59 6.44 72.49 0.47 1.05 16 29 O -0.40 -7.09 11.34 -148.98 -1.69 -8.79 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.54 6.23 -2.39 -0.01 1.52 16 35 H 0.08 0.30 7.13 -2.39 -0.02 0.28 16 36 H 0.09 0.54 8.07 -2.39 -0.02 0.52 16 37 H 0.09 0.30 6.25 -2.39 -0.01 0.29 16 38 H 0.11 1.32 8.07 -2.39 -0.02 1.30 16 39 H 0.06 1.42 7.42 -2.39 -0.02 1.40 16 40 H 0.04 1.18 6.55 -2.38 -0.02 1.16 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.10 1.95 7.93 -2.39 -0.02 1.93 16 43 H 0.04 0.87 8.12 -2.39 -0.02 0.85 16 44 H 0.07 2.31 6.47 -2.39 -0.02 2.30 16 45 H 0.06 2.47 5.82 -2.39 -0.01 2.46 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.11 3.50 7.93 -2.39 -0.02 3.48 16 48 H 0.06 2.09 8.12 -2.39 -0.02 2.07 16 49 H 0.40 19.60 7.90 -92.71 -0.73 18.86 16 50 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 51 H 0.10 0.96 5.92 -2.39 -0.01 0.94 16 52 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -79.38 410.16 0.34 -79.05 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: 0.19 Total: 32.89 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 7.83 Total: 20.24 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -7.93 Total: -116.06 kcal Atomic # 8 Polarization: -59.73 SS G_CDS: -1.78 Total: -61.50 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -79.38 0.34 -79.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570200759.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.260 kcal (2) G-P(sol) polarization free energy of solvation -79.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds