Wall clock time and date at job start Wed Apr 1 2020 00:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.55292 * 2 1 4 4 C 1.54997 * 110.61637 * 122.88038 * 2 1 3 5 5 C 1.54809 * 102.09373 * 155.68273 * 4 2 1 6 6 H 1.08996 * 110.49313 * 97.92491 * 5 4 2 7 7 C 1.50699 * 110.48671 * 220.44401 * 5 4 2 8 8 O 1.21278 * 119.99941 * 0.02562 * 7 5 4 9 9 N 1.34778 * 119.99777 * 179.97438 * 7 5 4 10 10 C 1.46497 * 120.00174 * 359.97438 * 9 7 5 11 11 C 1.46501 * 119.99687 * 180.02562 * 9 7 5 12 12 C 1.53001 * 109.47282 * 90.00451 * 11 9 7 13 13 C 1.53004 * 109.47145 * 180.02562 * 12 11 9 14 14 N 1.46898 * 109.46857 * 179.97438 * 13 12 11 15 15 C 1.46901 * 111.00035 * 66.04737 * 14 13 12 16 16 C 1.46906 * 110.99738 * 189.99698 * 14 13 12 17 17 C 1.50700 * 109.46865 * 170.00041 * 16 14 13 18 18 O 1.21287 * 120.00539 * 0.02562 * 17 16 14 19 19 N 1.34778 * 119.99829 * 179.97438 * 17 16 14 20 20 C 1.37095 * 120.00026 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00191 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99839 * 180.02562 * 20 19 17 23 23 N 1.31415 * 120.00170 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99805 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47437 * 89.99909 * 24 22 20 26 26 H 1.48507 * 109.47182 * 209.99529 * 24 22 20 27 27 H 1.48496 * 109.47384 * 329.99845 * 24 22 20 28 28 C 1.54108 * 104.18490 * 339.11772 * 5 4 2 29 29 O 1.44122 * 107.34739 * 357.97899 * 28 5 4 30 30 H 1.09004 * 109.47004 * 299.29925 * 1 2 3 31 31 H 1.09008 * 109.47240 * 59.29937 * 1 2 3 32 32 H 1.08999 * 109.47455 * 179.29786 * 1 2 3 33 33 H 1.08997 * 110.90645 * 273.87906 * 4 2 1 34 34 H 1.08997 * 110.90760 * 37.48091 * 4 2 1 35 35 H 1.09001 * 109.46600 * 90.00110 * 10 9 7 36 36 H 1.08996 * 109.46923 * 209.99712 * 10 9 7 37 37 H 1.08997 * 109.47173 * 330.00196 * 10 9 7 38 38 H 1.09004 * 109.46998 * 210.00019 * 11 9 7 39 39 H 1.09002 * 109.47316 * 329.99607 * 11 9 7 40 40 H 1.09003 * 109.46386 * 299.99326 * 12 11 9 41 41 H 1.08994 * 109.47402 * 59.99499 * 12 11 9 42 42 H 1.09004 * 109.47021 * 299.99499 * 13 12 11 43 43 H 1.09006 * 109.47065 * 59.99514 * 13 12 11 44 44 H 1.09003 * 109.47289 * 59.99474 * 15 14 13 45 45 H 1.08996 * 109.47102 * 179.97438 * 15 14 13 46 46 H 1.08994 * 109.46960 * 299.99507 * 15 14 13 47 47 H 1.09002 * 109.47218 * 289.99885 * 16 14 13 48 48 H 1.08999 * 109.46804 * 50.00224 * 16 14 13 49 49 H 0.97005 * 119.99916 * 359.97438 * 19 17 16 50 50 H 0.96999 * 119.99532 * 180.02562 * 23 22 20 51 51 H 1.08995 * 109.87857 * 117.40115 * 28 5 4 52 52 H 1.09003 * 109.87496 * 238.54547 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0757 -0.7876 1.2183 5 6 3.4810 -1.2122 0.7270 6 1 4.2405 -0.5282 1.1057 7 6 3.7848 -2.6249 1.1547 8 8 2.9681 -3.2539 1.7937 9 7 4.9636 -3.1897 0.8262 10 6 5.9494 -2.4305 0.0529 11 6 5.2586 -4.5633 1.2416 12 6 4.7830 -5.5363 0.1609 13 6 5.0905 -6.9708 0.5950 14 7 4.6333 -7.9050 -0.4424 15 6 5.4095 -7.7399 -1.6787 16 6 4.6933 -9.2928 0.0355 17 6 3.9943 -10.1939 -0.9497 18 8 3.4958 -9.7262 -1.9516 19 7 3.9242 -11.5198 -0.7180 20 6 3.2888 -12.3396 -1.6145 21 1 2.8441 -11.9230 -2.5062 22 6 3.2160 -13.7065 -1.3753 23 7 3.7567 -14.2134 -0.2901 24 14 2.3497 -14.8234 -2.5964 25 1 3.3261 -15.3039 -3.6070 26 1 1.7685 -15.9860 -1.8780 27 1 1.2658 -14.0687 -3.2751 28 6 3.3874 -1.1219 -0.8086 29 8 2.0384 -0.7336 -1.1348 30 1 -0.3633 0.5029 0.8962 31 1 -0.3634 0.5247 -0.8837 32 1 -0.3634 -1.0276 -0.0126 33 1 2.1482 -0.1452 2.0959 34 1 1.4564 -1.6600 1.4266 35 1 6.6062 -1.8890 0.7337 36 1 6.5408 -3.1158 -0.5542 37 1 5.4347 -1.7219 -0.5959 38 1 6.3332 -4.6766 1.3850 39 1 4.7426 -4.7788 2.1772 40 1 3.7084 -5.4229 0.0176 41 1 5.2990 -5.3208 -0.7747 42 1 6.1651 -7.0845 0.7387 43 1 4.5741 -7.1860 1.5305 44 1 6.4629 -7.9323 -1.4747 45 1 5.0507 -8.4437 -2.4296 46 1 5.2911 -6.7215 -2.0487 47 1 5.7349 -9.5991 0.1324 48 1 4.2016 -9.3645 1.0056 49 1 4.3239 -11.8940 0.0827 50 1 3.7061 -15.1676 -0.1234 51 1 4.0878 -0.3735 -1.1793 52 1 3.6107 -2.0927 -1.2512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570200760.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:41 Heat of formation + Delta-G solvation = -107.352283 kcal Electronic energy + Delta-G solvation = -29955.816945 eV Core-core repulsion = 25762.773631 eV Total energy + Delta-G solvation = -4193.043314 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.96997 -39.04846 -38.57152 -36.88354 -35.89339 -33.86901 -33.05914 -32.49452 -31.43459 -31.16216 -28.00341 -27.42677 -26.70011 -26.21104 -24.85697 -23.57075 -22.35167 -21.53731 -20.73987 -19.37786 -19.07150 -17.79436 -17.63847 -17.02801 -16.74299 -16.16945 -15.82769 -15.54791 -15.49026 -15.05092 -14.72927 -14.58381 -14.36846 -13.98126 -13.75966 -13.59756 -13.42005 -13.33273 -13.26403 -12.83587 -12.71107 -12.60788 -12.27025 -12.16122 -11.96282 -11.89517 -11.65242 -11.60994 -11.48691 -11.43849 -11.25812 -11.20430 -11.17145 -10.88393 -10.53881 -10.35939 -10.28947 -10.17979 -9.87390 -9.43823 -9.01676 -8.39224 -7.93233 -7.78809 -6.37876 -3.78382 2.27044 2.59517 3.20511 3.28881 3.35350 3.39649 3.88614 3.95374 4.02792 4.08808 4.29150 4.40006 4.54656 4.61073 4.67756 4.76173 4.84784 4.89749 4.99416 5.06052 5.10758 5.15369 5.16626 5.22348 5.23429 5.28950 5.34730 5.36897 5.41110 5.49060 5.55628 5.63947 5.75723 5.77012 5.78219 5.85725 5.97897 6.02704 6.07791 6.12803 6.31974 6.35690 6.47195 6.60642 6.99952 7.33955 7.46762 7.59071 7.84500 8.10840 8.66518 9.22380 9.59054 10.11351 10.79989 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016915 B = 0.001816 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.929004 B =15416.008513 C =16229.188539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 H 0.071 0.929 4 C -0.137 4.137 5 C -0.146 4.146 6 H 0.108 0.892 7 C 0.522 3.478 8 O -0.525 6.525 9 N -0.616 5.616 10 C 0.069 3.931 11 C 0.116 3.884 12 C -0.130 4.130 13 C 0.059 3.941 14 N -0.519 5.519 15 C 0.022 3.978 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.058 3.942 29 O -0.368 6.368 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.029 0.971 43 H 0.074 0.926 44 H 0.012 0.988 45 H 0.095 0.905 46 H 0.059 0.941 47 H 0.046 0.954 48 H 0.088 0.912 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.070 0.930 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.099 29.851 5.363 30.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 H 0.089 0.911 4 C -0.175 4.175 5 C -0.168 4.168 6 H 0.126 0.874 7 C 0.309 3.691 8 O -0.401 6.401 9 N -0.349 5.349 10 C -0.074 4.074 11 C -0.006 4.006 12 C -0.168 4.168 13 C -0.070 4.070 14 N -0.242 5.242 15 C -0.126 4.126 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.019 4.019 29 O -0.288 6.288 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.031 0.969 45 H 0.113 0.887 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.106 0.894 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.088 0.912 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.725 29.680 4.795 30.434 hybrid contribution 1.129 -1.017 0.324 1.554 sum 5.853 28.663 5.119 29.699 Atomic orbital electron populations 1.21782 0.92766 1.03486 1.02476 1.23177 0.95748 0.95016 0.84711 0.91143 1.23209 0.94093 1.01932 0.98290 1.22728 1.00776 0.95342 0.97951 0.87364 1.20305 0.81214 0.88147 0.79436 1.90725 1.46089 1.63954 1.39288 1.47825 1.16871 1.14832 1.55405 1.21991 0.92446 0.97044 0.95944 1.21499 1.00684 0.79644 0.98806 1.21919 1.03246 0.93425 0.98259 1.22027 0.97560 0.91979 0.95415 1.61525 1.55253 1.03316 1.04154 1.22552 0.93651 1.02791 0.93560 1.21865 0.99243 0.88564 0.98856 1.19756 0.85814 0.82920 0.88496 1.90482 1.51023 1.74747 1.29836 1.41871 1.50305 1.05118 1.22955 1.19698 1.31445 0.88085 1.03451 0.87937 1.25260 0.97904 0.97472 0.97421 1.69617 1.45211 1.13808 1.25797 0.85858 0.79450 0.79221 0.79756 1.20481 1.20954 1.19411 1.23237 0.85441 1.01201 0.92001 1.89036 1.27160 1.73739 1.38824 0.90958 0.91733 0.91366 0.89769 0.88117 0.92327 0.90454 0.90721 0.90533 0.89604 0.90447 0.91749 0.95248 0.90758 0.96948 0.88699 0.92222 0.93553 0.89407 0.77509 0.91937 0.91194 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.66 37.16 0.36 -0.69 16 2 C 0.07 0.55 3.96 -25.68 -0.10 0.44 16 3 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 4 C -0.14 -1.11 5.96 -24.72 -0.15 -1.26 16 5 C -0.15 -1.10 2.60 -90.24 -0.23 -1.34 16 6 H 0.11 0.52 8.07 -51.93 -0.42 0.10 16 7 C 0.52 5.56 6.84 -10.99 -0.08 5.49 16 8 O -0.53 -7.81 15.01 5.56 0.08 -7.73 16 9 N -0.62 -5.34 2.87 -181.57 -0.52 -5.86 16 10 C 0.07 0.34 9.99 59.85 0.60 0.93 16 11 C 0.12 1.10 5.41 -4.04 -0.02 1.08 16 12 C -0.13 -1.53 5.46 -26.73 -0.15 -1.68 16 13 C 0.06 0.78 4.96 -3.82 -0.02 0.76 16 14 N -0.52 -9.08 4.50 -244.36 -1.10 -10.18 16 15 C 0.02 0.37 8.96 60.07 0.54 0.91 16 16 C 0.05 0.86 5.45 -4.97 -0.03 0.83 16 17 C 0.44 10.82 7.47 -10.98 -0.08 10.74 16 18 O -0.58 -15.97 13.91 5.55 0.08 -15.89 16 19 N -0.57 -14.68 5.29 -10.96 -0.06 -14.74 16 20 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.94 13.05 55.50 0.72 -24.21 16 24 Si 0.93 21.43 29.55 -169.99 -5.02 16.40 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 C 0.06 0.45 5.49 37.74 0.21 0.65 16 29 O -0.37 -3.80 11.25 -35.23 -0.40 -4.20 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.10 1.09 6.79 -51.93 -0.35 0.74 16 35 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 37 H 0.07 0.29 4.43 -51.93 -0.23 0.06 16 38 H 0.08 0.55 8.07 -51.93 -0.42 0.14 16 39 H 0.09 0.94 7.42 -51.93 -0.39 0.56 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.06 0.72 6.55 -51.93 -0.34 0.38 16 42 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 43 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 44 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.09 1.94 5.82 -51.93 -0.30 1.63 16 46 H 0.06 0.88 6.47 -51.93 -0.34 0.54 16 47 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 48 H 0.09 1.50 7.93 -51.93 -0.41 1.09 16 49 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 50 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 51 H 0.07 0.35 7.74 -51.93 -0.40 -0.05 16 52 H 0.09 0.76 7.09 -51.93 -0.37 0.39 16 LS Contribution 411.27 15.07 6.20 6.20 Total: -1.00 -35.30 411.27 -8.27 -43.57 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -8.86 Total: 7.87 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 0.61 Total: 8.77 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.95 Total: -54.99 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.24 Total: -27.82 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.30 -8.27 -43.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570200760.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.787 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds