Wall clock time and date at job start Wed Apr 1 2020 00:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.55292 * 2 1 4 4 C 1.54997 * 110.61637 * 122.88038 * 2 1 3 5 5 C 1.54809 * 102.09373 * 155.68273 * 4 2 1 6 6 H 1.08996 * 110.49313 * 97.92491 * 5 4 2 7 7 C 1.50699 * 110.48671 * 220.44401 * 5 4 2 8 8 O 1.21278 * 119.99941 * 0.02562 * 7 5 4 9 9 N 1.34778 * 119.99777 * 179.97438 * 7 5 4 10 10 C 1.46497 * 120.00174 * 359.97438 * 9 7 5 11 11 C 1.46501 * 119.99687 * 180.02562 * 9 7 5 12 12 C 1.53001 * 109.47282 * 90.00451 * 11 9 7 13 13 C 1.53004 * 109.47145 * 180.02562 * 12 11 9 14 14 N 1.46898 * 109.46857 * 179.97438 * 13 12 11 15 15 C 1.46901 * 111.00035 * 66.04737 * 14 13 12 16 16 C 1.46906 * 110.99738 * 189.99698 * 14 13 12 17 17 C 1.50700 * 109.46865 * 170.00041 * 16 14 13 18 18 O 1.21287 * 120.00539 * 0.02562 * 17 16 14 19 19 N 1.34778 * 119.99829 * 179.97438 * 17 16 14 20 20 C 1.37095 * 120.00026 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00191 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99839 * 180.02562 * 20 19 17 23 23 N 1.31415 * 120.00170 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99805 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47437 * 89.99909 * 24 22 20 26 26 H 1.48507 * 109.47182 * 209.99529 * 24 22 20 27 27 H 1.48496 * 109.47384 * 329.99845 * 24 22 20 28 28 C 1.54108 * 104.18490 * 339.11772 * 5 4 2 29 29 O 1.44122 * 107.34739 * 357.97899 * 28 5 4 30 30 H 1.09004 * 109.47004 * 299.29925 * 1 2 3 31 31 H 1.09008 * 109.47240 * 59.29937 * 1 2 3 32 32 H 1.08999 * 109.47455 * 179.29786 * 1 2 3 33 33 H 1.08997 * 110.90645 * 273.87906 * 4 2 1 34 34 H 1.08997 * 110.90760 * 37.48091 * 4 2 1 35 35 H 1.09001 * 109.46600 * 90.00110 * 10 9 7 36 36 H 1.08996 * 109.46923 * 209.99712 * 10 9 7 37 37 H 1.08997 * 109.47173 * 330.00196 * 10 9 7 38 38 H 1.09004 * 109.46998 * 210.00019 * 11 9 7 39 39 H 1.09002 * 109.47316 * 329.99607 * 11 9 7 40 40 H 1.09003 * 109.46386 * 299.99326 * 12 11 9 41 41 H 1.08994 * 109.47402 * 59.99499 * 12 11 9 42 42 H 1.09004 * 109.47021 * 299.99499 * 13 12 11 43 43 H 1.09006 * 109.47065 * 59.99514 * 13 12 11 44 44 H 1.09003 * 109.47289 * 59.99474 * 15 14 13 45 45 H 1.08996 * 109.47102 * 179.97438 * 15 14 13 46 46 H 1.08994 * 109.46960 * 299.99507 * 15 14 13 47 47 H 1.09002 * 109.47218 * 289.99885 * 16 14 13 48 48 H 1.08999 * 109.46804 * 50.00224 * 16 14 13 49 49 H 0.97005 * 119.99916 * 359.97438 * 19 17 16 50 50 H 0.96999 * 119.99532 * 180.02562 * 23 22 20 51 51 H 1.08995 * 109.87857 * 117.40115 * 28 5 4 52 52 H 1.09003 * 109.87496 * 238.54547 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0757 -0.7876 1.2183 5 6 3.4810 -1.2122 0.7270 6 1 4.2405 -0.5282 1.1057 7 6 3.7848 -2.6249 1.1547 8 8 2.9681 -3.2539 1.7937 9 7 4.9636 -3.1897 0.8262 10 6 5.9494 -2.4305 0.0529 11 6 5.2586 -4.5633 1.2416 12 6 4.7830 -5.5363 0.1609 13 6 5.0905 -6.9708 0.5950 14 7 4.6333 -7.9050 -0.4424 15 6 5.4095 -7.7399 -1.6787 16 6 4.6933 -9.2928 0.0355 17 6 3.9943 -10.1939 -0.9497 18 8 3.4958 -9.7262 -1.9516 19 7 3.9242 -11.5198 -0.7180 20 6 3.2888 -12.3396 -1.6145 21 1 2.8441 -11.9230 -2.5062 22 6 3.2160 -13.7065 -1.3753 23 7 3.7567 -14.2134 -0.2901 24 14 2.3497 -14.8234 -2.5964 25 1 3.3261 -15.3039 -3.6070 26 1 1.7685 -15.9860 -1.8780 27 1 1.2658 -14.0687 -3.2751 28 6 3.3874 -1.1219 -0.8086 29 8 2.0384 -0.7336 -1.1348 30 1 -0.3633 0.5029 0.8962 31 1 -0.3634 0.5247 -0.8837 32 1 -0.3634 -1.0276 -0.0126 33 1 2.1482 -0.1452 2.0959 34 1 1.4564 -1.6600 1.4266 35 1 6.6062 -1.8890 0.7337 36 1 6.5408 -3.1158 -0.5542 37 1 5.4347 -1.7219 -0.5959 38 1 6.3332 -4.6766 1.3850 39 1 4.7426 -4.7788 2.1772 40 1 3.7084 -5.4229 0.0176 41 1 5.2990 -5.3208 -0.7747 42 1 6.1651 -7.0845 0.7387 43 1 4.5741 -7.1860 1.5305 44 1 6.4629 -7.9323 -1.4747 45 1 5.0507 -8.4437 -2.4296 46 1 5.2911 -6.7215 -2.0487 47 1 5.7349 -9.5991 0.1324 48 1 4.2016 -9.3645 1.0056 49 1 4.3239 -11.8940 0.0827 50 1 3.7061 -15.1676 -0.1234 51 1 4.0878 -0.3735 -1.1793 52 1 3.6107 -2.0927 -1.2512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570200760.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:37 Heat of formation + Delta-G solvation = -134.084071 kcal Electronic energy + Delta-G solvation = -29956.976122 eV Core-core repulsion = 25762.773631 eV Total energy + Delta-G solvation = -4194.202491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.66832 -40.40996 -39.69295 -38.24281 -36.83100 -35.89340 -33.89071 -33.29729 -33.14396 -32.20569 -29.45036 -28.23287 -27.43083 -27.09166 -26.53503 -24.71052 -23.19171 -22.17396 -21.84482 -21.00077 -20.05115 -19.84775 -18.29065 -17.88058 -17.67830 -17.37050 -16.75219 -16.67161 -16.58177 -16.45643 -15.97306 -15.81830 -15.69275 -15.28522 -15.02634 -14.77767 -14.48870 -14.34274 -14.03370 -13.77134 -13.50032 -13.35199 -13.31075 -13.24805 -13.05638 -12.95787 -12.83766 -12.78214 -12.67835 -12.51899 -12.40473 -12.35184 -12.24976 -12.12939 -12.11172 -11.81916 -11.54855 -11.46574 -11.03017 -10.55736 -10.30152 -10.00914 -9.71184 -9.18285 -8.47216 -5.95872 1.36819 1.40270 1.50377 1.53460 1.94209 2.04484 2.28060 2.79155 2.82825 3.19289 3.27777 3.41607 3.49851 3.84356 3.91887 3.99176 4.06599 4.13884 4.16045 4.23028 4.28810 4.36129 4.38080 4.43140 4.46952 4.51785 4.55218 4.57113 4.60794 4.62781 4.68443 4.69815 4.79562 4.80800 4.85052 4.93551 4.97939 5.08799 5.13761 5.17005 5.26273 5.28650 5.40318 5.54077 5.88557 5.90337 6.07787 6.24172 6.33021 6.60400 7.10218 7.12419 7.55693 8.12090 8.70228 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016915 B = 0.001816 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.929004 B =15416.008513 C =16229.188539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.070 3.930 3 H 0.099 0.901 4 C -0.139 4.139 5 C -0.138 4.138 6 H 0.147 0.853 7 C 0.511 3.489 8 O -0.581 6.581 9 N -0.613 5.613 10 C 0.061 3.939 11 C 0.120 3.880 12 C -0.118 4.118 13 C 0.062 3.938 14 N -0.547 5.547 15 C 0.029 3.971 16 C 0.059 3.941 17 C 0.440 3.560 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.269 1.269 26 H -0.270 1.270 27 H -0.275 1.275 28 C 0.057 3.943 29 O -0.402 6.402 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.035 0.965 45 H 0.051 0.949 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.105 0.895 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.107 0.893 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.401 31.735 5.857 33.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.013 3.987 3 H 0.117 0.883 4 C -0.177 4.177 5 C -0.159 4.159 6 H 0.165 0.835 7 C 0.300 3.700 8 O -0.461 6.461 9 N -0.345 5.345 10 C -0.080 4.080 11 C -0.003 4.003 12 C -0.157 4.157 13 C -0.066 4.066 14 N -0.271 5.271 15 C -0.119 4.119 16 C -0.073 4.073 17 C 0.227 3.773 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.095 0.905 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.200 1.200 28 C -0.020 4.020 29 O -0.322 6.322 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.129 0.871 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.123 0.877 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.124 0.876 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.082 31.585 5.296 32.800 hybrid contribution 0.426 -1.557 0.164 1.623 sum 7.508 30.028 5.460 31.430 Atomic orbital electron populations 1.21825 0.93010 1.02232 1.03622 1.23360 0.95771 0.95943 0.83637 0.88290 1.23185 0.94073 1.00979 0.99499 1.22785 1.01345 0.93877 0.97942 0.83549 1.20961 0.81079 0.89265 0.78691 1.90701 1.47907 1.65500 1.41993 1.47958 1.17006 1.14603 1.54941 1.22289 0.91994 0.97328 0.96410 1.21422 1.02218 0.79738 0.96898 1.21789 1.00713 0.93529 0.99627 1.22082 0.99162 0.91329 0.94012 1.61463 1.56868 1.03192 1.05620 1.22406 0.94507 1.02548 0.92391 1.21727 0.99870 0.88278 0.97380 1.20817 0.84794 0.82885 0.88779 1.90459 1.52482 1.75417 1.31836 1.41938 1.50656 1.05754 1.22866 1.19647 1.33397 0.89307 1.03853 0.90456 1.26052 0.98069 0.98150 0.99132 1.69676 1.45300 1.14494 1.26659 0.84921 0.78280 0.77347 0.77730 1.19457 1.19472 1.19978 1.23386 0.85125 1.01580 0.91888 1.89000 1.28695 1.74430 1.40114 0.88993 0.91414 0.93792 0.87594 0.91837 0.89902 0.89512 0.89553 0.87116 0.91551 0.94564 0.90838 0.92306 0.90770 0.94673 0.92995 0.90499 0.91056 0.87700 0.77010 0.91299 0.87552 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.66 71.98 0.70 -1.43 16 2 C 0.07 1.00 3.96 31.28 0.12 1.12 16 3 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.14 -2.17 5.96 31.90 0.19 -1.98 16 5 C -0.14 -1.84 2.60 -10.55 -0.03 -1.87 16 6 H 0.15 0.81 8.07 -2.39 -0.02 0.79 16 7 C 0.51 10.74 6.84 87.66 0.60 11.34 16 8 O -0.58 -18.29 15.01 -3.02 -0.05 -18.34 16 9 N -0.61 -9.61 2.87 -846.76 -2.43 -12.03 16 10 C 0.06 0.38 9.99 127.77 1.28 1.66 16 11 C 0.12 2.10 5.41 86.38 0.47 2.57 16 12 C -0.12 -2.69 5.46 30.60 0.17 -2.52 16 13 C 0.06 1.53 4.96 86.30 0.43 1.96 16 14 N -0.55 -18.81 4.50 -927.02 -4.17 -22.99 16 15 C 0.03 0.96 8.96 127.69 1.14 2.10 16 16 C 0.06 2.15 5.45 85.56 0.47 2.61 16 17 C 0.44 21.93 7.47 87.66 0.66 22.59 16 18 O -0.62 -35.52 13.91 -3.05 -0.04 -35.57 16 19 N -0.57 -30.56 5.29 -306.99 -1.62 -32.18 16 20 C -0.33 -19.44 9.68 84.04 0.81 -18.63 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 23 N -0.92 -50.66 13.05 21.66 0.28 -50.38 16 24 Si 0.99 44.04 29.55 68.60 2.03 46.07 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 27 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 28 C 0.06 0.77 5.49 72.36 0.40 1.17 16 29 O -0.40 -8.09 11.25 -148.98 -1.68 -9.76 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.89 8.14 -2.38 -0.02 0.88 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.49 6.79 -2.39 -0.02 1.47 16 35 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.09 0.43 8.07 -2.39 -0.02 0.41 16 37 H 0.09 0.35 4.43 -2.39 -0.01 0.34 16 38 H 0.11 1.20 8.07 -2.38 -0.02 1.18 16 39 H 0.07 1.44 7.42 -2.39 -0.02 1.43 16 40 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.52 6.55 -2.39 -0.02 1.51 16 42 H 0.06 1.15 8.12 -2.38 -0.02 1.13 16 43 H 0.07 1.84 7.93 -2.38 -0.02 1.82 16 44 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.05 2.17 5.82 -2.39 -0.01 2.15 16 46 H 0.08 2.19 6.47 -2.39 -0.02 2.17 16 47 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 48 H 0.10 3.48 7.93 -2.39 -0.02 3.46 16 49 H 0.40 19.93 7.90 -92.70 -0.73 19.20 16 50 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 51 H 0.11 0.66 7.74 -2.39 -0.02 0.64 16 52 H 0.07 1.20 7.09 -2.39 -0.02 1.18 16 Total: -1.00 -81.99 411.27 0.37 -81.62 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.18 Total: 33.20 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 7.86 Total: 20.36 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -7.94 Total: -117.57 kcal Atomic # 8 Polarization: -61.90 SS G_CDS: -1.76 Total: -63.67 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -81.99 0.37 -81.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570200760.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.467 kcal (2) G-P(sol) polarization free energy of solvation -81.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds