Wall clock time and date at job start Wed Apr 1 2020 00:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 110.32986 * 2 1 4 4 C 1.54487 * 110.37091 * 122.24844 * 2 1 3 5 5 C 1.54510 * 104.06095 * 142.92187 * 4 2 1 6 6 H 1.08993 * 110.51320 * 241.35845 * 5 4 2 7 7 C 1.50696 * 110.51053 * 118.64312 * 5 4 2 8 8 O 1.21285 * 119.99932 * 0.02562 * 7 5 4 9 9 N 1.34777 * 119.99956 * 180.02562 * 7 5 4 10 10 C 1.46497 * 120.00282 * 359.97438 * 9 7 5 11 11 C 1.46507 * 119.99747 * 180.02562 * 9 7 5 12 12 C 1.53005 * 109.47148 * 90.00104 * 11 9 7 13 13 C 1.52998 * 109.47223 * 180.02562 * 12 11 9 14 14 N 1.46894 * 109.46951 * 180.02562 * 13 12 11 15 15 C 1.46895 * 111.00446 * 66.04245 * 14 13 12 16 16 C 1.46902 * 110.99830 * 189.99919 * 14 13 12 17 17 C 1.50696 * 109.47408 * 169.99642 * 16 14 13 18 18 O 1.21296 * 119.99976 * 0.02562 * 17 16 14 19 19 N 1.34773 * 120.00278 * 179.97438 * 17 16 14 20 20 C 1.37103 * 120.00142 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99774 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99997 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99886 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00022 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46926 * 90.00027 * 24 22 20 26 26 H 1.48496 * 109.47055 * 209.99909 * 24 22 20 27 27 H 1.48497 * 109.47162 * 330.00358 * 24 22 20 28 28 C 1.54486 * 104.06135 * 0.02562 * 5 4 2 29 29 O 1.44419 * 110.46793 * 237.68501 * 2 1 3 30 30 H 1.09000 * 109.47290 * 297.74611 * 1 2 3 31 31 H 1.08999 * 109.47135 * 57.75453 * 1 2 3 32 32 H 1.09005 * 109.46738 * 177.75129 * 1 2 3 33 33 H 1.08991 * 110.51176 * 261.56589 * 4 2 1 34 34 H 1.08995 * 110.51259 * 24.28078 * 4 2 1 35 35 H 1.09001 * 109.46821 * 90.00309 * 10 9 7 36 36 H 1.08992 * 109.47463 * 210.00215 * 10 9 7 37 37 H 1.08994 * 109.46977 * 330.00577 * 10 9 7 38 38 H 1.09000 * 109.46739 * 209.99610 * 11 9 7 39 39 H 1.08996 * 109.47473 * 329.99775 * 11 9 7 40 40 H 1.09003 * 109.46951 * 299.99944 * 12 11 9 41 41 H 1.08996 * 109.47203 * 59.99505 * 12 11 9 42 42 H 1.09000 * 109.46685 * 299.99518 * 13 12 11 43 43 H 1.08999 * 109.47105 * 59.99250 * 13 12 11 44 44 H 1.09003 * 109.46898 * 60.00349 * 15 14 13 45 45 H 1.09000 * 109.47121 * 179.97438 * 15 14 13 46 46 H 1.08995 * 109.47300 * 299.99825 * 15 14 13 47 47 H 1.09004 * 109.47099 * 289.99770 * 16 14 13 48 48 H 1.08998 * 109.47246 * 49.99429 * 16 14 13 49 49 H 0.97002 * 119.99779 * 359.97438 * 19 17 16 50 50 H 0.97006 * 119.99878 * 179.97438 * 23 22 20 51 51 H 1.09003 * 110.36984 * 217.18794 * 28 5 4 52 52 H 1.08996 * 110.37119 * 94.85075 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0678 -0.7728 1.2248 5 6 3.3194 -1.5027 0.6883 6 1 3.1988 -2.5824 0.7757 7 6 4.5528 -1.0464 1.4242 8 8 4.4622 -0.2144 2.3020 9 7 5.7566 -1.5630 1.1069 10 6 5.8660 -2.5683 0.0470 11 6 6.9555 -1.1198 1.8228 12 6 7.1796 -2.0133 3.0444 13 6 8.4314 -1.5501 3.7924 14 7 8.6468 -2.4084 4.9649 15 6 8.9706 -3.7826 4.5591 16 6 9.6928 -1.8565 5.8362 17 6 9.7170 -2.6179 7.1365 18 8 8.9397 -3.5310 7.3191 19 7 10.6031 -2.2851 8.0959 20 6 10.6254 -2.9782 9.2786 21 1 9.9327 -3.7907 9.4416 22 6 11.5393 -2.6354 10.2676 23 7 12.3824 -1.6472 10.0691 24 14 11.5693 -3.5793 11.8793 25 1 12.5029 -4.7283 11.7627 26 1 12.0240 -2.6808 12.9707 27 1 10.2050 -4.0792 12.1857 28 6 3.3902 -1.0840 -0.7971 29 8 2.0350 -0.7233 -1.1435 30 1 -0.3634 0.4784 0.9095 31 1 -0.3633 0.5483 -0.8692 32 1 -0.3633 -1.0269 -0.0403 33 1 2.3411 -0.0820 2.0224 34 1 1.3284 -1.4917 1.5776 35 1 6.0305 -2.0717 -0.9092 36 1 6.7039 -3.2318 0.2607 37 1 4.9450 -3.1494 0.0009 38 1 7.8191 -1.1860 1.1610 39 1 6.8244 -0.0874 2.1469 40 1 6.3160 -1.9472 3.7063 41 1 7.3107 -3.0457 2.7203 42 1 9.2951 -1.6160 3.1308 43 1 8.2998 -0.5178 4.1165 44 1 9.8792 -3.7791 3.9570 45 1 9.1256 -4.3964 5.4464 46 1 8.1478 -4.1918 3.9730 47 1 10.6611 -1.9472 5.3439 48 1 9.4832 -0.8054 6.0346 49 1 11.2254 -1.5556 7.9494 50 1 13.0202 -1.4076 10.7597 51 1 3.7289 -1.9187 -1.4109 52 1 4.0542 -0.2283 -0.9189 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570200761.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:56 Heat of formation + Delta-G solvation = -110.297506 kcal Electronic energy + Delta-G solvation = -29703.421597 eV Core-core repulsion = 25510.250569 eV Total energy + Delta-G solvation = -4193.171028 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98718 -39.10939 -38.59363 -36.90729 -35.91117 -33.88331 -33.04221 -32.53619 -31.44663 -31.17917 -28.01088 -27.41176 -26.70588 -26.16329 -24.89307 -23.66900 -22.43143 -21.50484 -20.74164 -19.40933 -19.09927 -17.98227 -17.80819 -16.80064 -16.47492 -16.10310 -15.84119 -15.74981 -15.44936 -15.24223 -14.78991 -14.61877 -14.26411 -14.18160 -13.73232 -13.59619 -13.42747 -13.34358 -13.24924 -12.96176 -12.88634 -12.45806 -12.41795 -12.20492 -12.01138 -11.90472 -11.81678 -11.64005 -11.46710 -11.29199 -11.22709 -11.20427 -11.15666 -10.90023 -10.56201 -10.37342 -10.25129 -10.19660 -10.06611 -9.45363 -9.04209 -8.41164 -7.94907 -7.80872 -6.39384 -3.80025 2.24823 2.56811 3.19241 3.27719 3.33974 3.39775 3.93606 3.93860 4.02409 4.16435 4.25351 4.28083 4.49414 4.58851 4.72183 4.76307 4.83183 4.88602 4.95158 5.05573 5.07607 5.13045 5.14872 5.20747 5.27020 5.28672 5.30235 5.34495 5.44892 5.47249 5.60612 5.62373 5.65128 5.74146 5.74530 5.75526 5.95790 6.00598 6.05509 6.10393 6.29672 6.33301 6.35805 6.58320 6.97693 7.31799 7.44568 7.57483 7.81460 8.09212 8.64832 9.20758 9.57395 10.09608 10.78441 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024331 B = 0.001617 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.506417 B =17309.254093 C =17843.656304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.071 0.929 4 C -0.143 4.143 5 C -0.146 4.146 6 H 0.110 0.890 7 C 0.521 3.479 8 O -0.527 6.527 9 N -0.614 5.614 10 C 0.073 3.927 11 C 0.116 3.884 12 C -0.129 4.129 13 C 0.059 3.941 14 N -0.519 5.519 15 C 0.022 3.978 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.060 3.940 29 O -0.369 6.369 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.030 0.970 43 H 0.074 0.926 44 H 0.012 0.988 45 H 0.095 0.905 46 H 0.059 0.941 47 H 0.047 0.953 48 H 0.088 0.912 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.100 0.900 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.053 2.477 -25.861 30.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 H 0.089 0.911 4 C -0.181 4.181 5 C -0.167 4.167 6 H 0.128 0.872 7 C 0.308 3.692 8 O -0.403 6.403 9 N -0.347 5.347 10 C -0.071 4.071 11 C -0.007 4.007 12 C -0.168 4.168 13 C -0.070 4.070 14 N -0.243 5.243 15 C -0.126 4.126 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.017 4.017 29 O -0.288 6.288 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.031 0.969 45 H 0.113 0.887 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.106 0.894 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.118 0.882 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.026 2.326 -25.064 29.840 hybrid contribution 1.556 -0.044 0.423 1.613 sum -14.470 2.281 -24.641 28.666 Atomic orbital electron populations 1.21805 0.92859 1.03045 1.02646 1.23058 0.95561 0.95646 0.84557 0.91109 1.23050 0.95205 1.00413 0.99412 1.22705 0.94226 1.03068 0.96727 0.87178 1.20321 0.84282 0.81376 0.83237 1.90716 1.85482 1.32619 1.31466 1.47820 1.07354 1.42170 1.37386 1.21927 1.03496 0.91539 0.90091 1.21509 0.85899 0.99774 0.93515 1.21912 0.99293 0.99298 0.96284 1.22027 0.96021 0.97626 0.91334 1.61516 1.44355 1.02341 1.16065 1.22553 0.97780 0.90466 1.01765 1.21861 0.93200 0.99491 0.93965 1.19754 0.84327 0.87318 0.85611 1.90481 1.42330 1.32648 1.80704 1.41869 1.31802 1.32293 1.14231 1.19702 1.17500 1.14390 0.91196 0.87936 1.25253 0.95914 0.96948 0.99857 1.69615 1.20834 1.28478 1.35462 0.85859 0.78734 0.78887 0.80808 1.20468 1.20940 1.19430 1.23366 0.85451 1.00391 0.92512 1.89151 1.26379 1.74666 1.38639 0.90846 0.91830 0.91663 0.87914 0.89922 0.92260 0.90491 0.90858 0.90500 0.89589 0.90493 0.91751 0.95234 0.90744 0.96930 0.88695 0.92238 0.93545 0.89407 0.77505 0.91920 0.88229 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.52 37.16 0.35 -0.54 16 2 C 0.07 0.54 3.92 -25.95 -0.10 0.43 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.14 -1.16 6.21 -25.16 -0.16 -1.32 16 5 C -0.15 -1.11 2.57 -90.20 -0.23 -1.34 16 6 H 0.11 0.67 7.30 -51.93 -0.38 0.29 16 7 C 0.52 5.35 6.93 -10.99 -0.08 5.27 16 8 O -0.53 -7.54 14.86 5.55 0.08 -7.46 16 9 N -0.61 -5.14 2.87 -181.57 -0.52 -5.66 16 10 C 0.07 0.34 9.08 59.85 0.54 0.88 16 11 C 0.12 1.06 5.41 -4.04 -0.02 1.04 16 12 C -0.13 -1.48 5.46 -26.73 -0.15 -1.63 16 13 C 0.06 0.76 4.96 -3.83 -0.02 0.74 16 14 N -0.52 -8.94 4.50 -244.38 -1.10 -10.04 16 15 C 0.02 0.37 8.96 60.06 0.54 0.90 16 16 C 0.05 0.85 5.45 -4.98 -0.03 0.82 16 17 C 0.44 10.72 7.47 -10.99 -0.08 10.64 16 18 O -0.58 -15.83 13.91 5.54 0.08 -15.76 16 19 N -0.57 -14.55 5.29 -10.96 -0.06 -14.61 16 20 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 21 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 24 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.06 0.40 6.06 37.94 0.23 0.63 16 29 O -0.37 -3.24 11.35 -35.23 -0.40 -3.64 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 1.03 6.50 -51.93 -0.34 0.69 16 34 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 35 H 0.06 0.19 8.00 -51.93 -0.42 -0.22 16 36 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 37 H 0.07 0.26 6.02 -51.93 -0.31 -0.06 16 38 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 39 H 0.09 0.92 7.42 -51.93 -0.39 0.53 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 0.70 6.55 -51.93 -0.34 0.36 16 42 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 43 H 0.07 0.95 7.93 -51.93 -0.41 0.53 16 44 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.09 1.91 5.82 -51.93 -0.30 1.61 16 46 H 0.06 0.86 6.47 -51.93 -0.34 0.52 16 47 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 48 H 0.09 1.48 7.93 -51.93 -0.41 1.07 16 49 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 50 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 51 H 0.10 0.43 7.32 -51.93 -0.38 0.05 16 52 H 0.06 0.44 7.86 -51.93 -0.41 0.03 16 LS Contribution 411.49 15.07 6.20 6.20 Total: -1.00 -34.56 411.49 -8.34 -42.89 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -8.88 Total: 7.39 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 0.56 Total: 8.48 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.96 Total: -54.36 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.24 Total: -26.85 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.56 -8.34 -42.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570200761.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.404 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds