Wall clock time and date at job start Wed Apr 1 2020 00:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 110.32986 * 2 1 4 4 C 1.54487 * 110.37091 * 122.24844 * 2 1 3 5 5 C 1.54510 * 104.06095 * 142.92187 * 4 2 1 6 6 H 1.08993 * 110.51320 * 241.35845 * 5 4 2 7 7 C 1.50696 * 110.51053 * 118.64312 * 5 4 2 8 8 O 1.21285 * 119.99932 * 0.02562 * 7 5 4 9 9 N 1.34777 * 119.99956 * 180.02562 * 7 5 4 10 10 C 1.46497 * 120.00282 * 359.97438 * 9 7 5 11 11 C 1.46507 * 119.99747 * 180.02562 * 9 7 5 12 12 C 1.53005 * 109.47148 * 90.00104 * 11 9 7 13 13 C 1.52998 * 109.47223 * 180.02562 * 12 11 9 14 14 N 1.46894 * 109.46951 * 180.02562 * 13 12 11 15 15 C 1.46895 * 111.00446 * 66.04245 * 14 13 12 16 16 C 1.46902 * 110.99830 * 189.99919 * 14 13 12 17 17 C 1.50696 * 109.47408 * 169.99642 * 16 14 13 18 18 O 1.21296 * 119.99976 * 0.02562 * 17 16 14 19 19 N 1.34773 * 120.00278 * 179.97438 * 17 16 14 20 20 C 1.37103 * 120.00142 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99774 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99997 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99886 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00022 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46926 * 90.00027 * 24 22 20 26 26 H 1.48496 * 109.47055 * 209.99909 * 24 22 20 27 27 H 1.48497 * 109.47162 * 330.00358 * 24 22 20 28 28 C 1.54486 * 104.06135 * 0.02562 * 5 4 2 29 29 O 1.44419 * 110.46793 * 237.68501 * 2 1 3 30 30 H 1.09000 * 109.47290 * 297.74611 * 1 2 3 31 31 H 1.08999 * 109.47135 * 57.75453 * 1 2 3 32 32 H 1.09005 * 109.46738 * 177.75129 * 1 2 3 33 33 H 1.08991 * 110.51176 * 261.56589 * 4 2 1 34 34 H 1.08995 * 110.51259 * 24.28078 * 4 2 1 35 35 H 1.09001 * 109.46821 * 90.00309 * 10 9 7 36 36 H 1.08992 * 109.47463 * 210.00215 * 10 9 7 37 37 H 1.08994 * 109.46977 * 330.00577 * 10 9 7 38 38 H 1.09000 * 109.46739 * 209.99610 * 11 9 7 39 39 H 1.08996 * 109.47473 * 329.99775 * 11 9 7 40 40 H 1.09003 * 109.46951 * 299.99944 * 12 11 9 41 41 H 1.08996 * 109.47203 * 59.99505 * 12 11 9 42 42 H 1.09000 * 109.46685 * 299.99518 * 13 12 11 43 43 H 1.08999 * 109.47105 * 59.99250 * 13 12 11 44 44 H 1.09003 * 109.46898 * 60.00349 * 15 14 13 45 45 H 1.09000 * 109.47121 * 179.97438 * 15 14 13 46 46 H 1.08995 * 109.47300 * 299.99825 * 15 14 13 47 47 H 1.09004 * 109.47099 * 289.99770 * 16 14 13 48 48 H 1.08998 * 109.47246 * 49.99429 * 16 14 13 49 49 H 0.97002 * 119.99779 * 359.97438 * 19 17 16 50 50 H 0.97006 * 119.99878 * 179.97438 * 23 22 20 51 51 H 1.09003 * 110.36984 * 217.18794 * 28 5 4 52 52 H 1.08996 * 110.37119 * 94.85075 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0678 -0.7728 1.2248 5 6 3.3194 -1.5027 0.6883 6 1 3.1988 -2.5824 0.7757 7 6 4.5528 -1.0464 1.4242 8 8 4.4622 -0.2144 2.3020 9 7 5.7566 -1.5630 1.1069 10 6 5.8660 -2.5683 0.0470 11 6 6.9555 -1.1198 1.8228 12 6 7.1796 -2.0133 3.0444 13 6 8.4314 -1.5501 3.7924 14 7 8.6468 -2.4084 4.9649 15 6 8.9706 -3.7826 4.5591 16 6 9.6928 -1.8565 5.8362 17 6 9.7170 -2.6179 7.1365 18 8 8.9397 -3.5310 7.3191 19 7 10.6031 -2.2851 8.0959 20 6 10.6254 -2.9782 9.2786 21 1 9.9327 -3.7907 9.4416 22 6 11.5393 -2.6354 10.2676 23 7 12.3824 -1.6472 10.0691 24 14 11.5693 -3.5793 11.8793 25 1 12.5029 -4.7283 11.7627 26 1 12.0240 -2.6808 12.9707 27 1 10.2050 -4.0792 12.1857 28 6 3.3902 -1.0840 -0.7971 29 8 2.0350 -0.7233 -1.1435 30 1 -0.3634 0.4784 0.9095 31 1 -0.3633 0.5483 -0.8692 32 1 -0.3633 -1.0269 -0.0403 33 1 2.3411 -0.0820 2.0224 34 1 1.3284 -1.4917 1.5776 35 1 6.0305 -2.0717 -0.9092 36 1 6.7039 -3.2318 0.2607 37 1 4.9450 -3.1494 0.0009 38 1 7.8191 -1.1860 1.1610 39 1 6.8244 -0.0874 2.1469 40 1 6.3160 -1.9472 3.7063 41 1 7.3107 -3.0457 2.7203 42 1 9.2951 -1.6160 3.1308 43 1 8.2998 -0.5178 4.1165 44 1 9.8792 -3.7791 3.9570 45 1 9.1256 -4.3964 5.4464 46 1 8.1478 -4.1918 3.9730 47 1 10.6611 -1.9472 5.3439 48 1 9.4832 -0.8054 6.0346 49 1 11.2254 -1.5556 7.9494 50 1 13.0202 -1.4076 10.7597 51 1 3.7289 -1.9187 -1.4109 52 1 4.0542 -0.2283 -0.9189 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570200761.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:50 Heat of formation + Delta-G solvation = -135.950177 kcal Electronic energy + Delta-G solvation = -29704.533980 eV Core-core repulsion = 25510.250569 eV Total energy + Delta-G solvation = -4194.283412 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.67090 -40.40376 -39.72709 -38.23693 -36.82590 -35.88593 -33.85029 -33.29322 -33.14988 -32.18662 -29.44340 -28.19269 -27.42488 -27.00172 -26.50435 -24.77189 -23.25740 -22.18215 -21.79204 -20.99075 -20.07405 -19.84870 -18.63620 -17.88091 -17.41729 -17.06075 -16.78447 -16.62262 -16.58637 -16.37259 -16.17343 -15.83491 -15.74382 -15.19843 -15.13203 -14.78317 -14.60815 -14.16243 -13.98813 -13.76370 -13.50818 -13.47015 -13.42882 -13.17349 -13.01137 -12.99097 -12.88594 -12.76867 -12.68734 -12.51506 -12.40951 -12.38621 -12.32283 -12.12599 -11.84540 -11.79622 -11.53460 -11.45939 -10.87222 -10.84949 -10.29406 -10.00416 -9.71737 -9.17870 -8.46791 -5.95535 1.37305 1.40850 1.49751 1.53872 1.92395 2.05073 2.28423 2.78111 2.86744 3.19872 3.32656 3.42334 3.60067 3.70020 3.92074 3.96318 4.05745 4.14582 4.15870 4.18793 4.30383 4.36670 4.38829 4.41587 4.46939 4.52753 4.57725 4.61586 4.62247 4.64314 4.69475 4.71798 4.80508 4.82092 4.90022 4.97268 4.98514 5.06343 5.10378 5.16138 5.25505 5.28995 5.40728 5.53809 5.78239 5.89046 6.08256 6.24729 6.32265 6.60809 7.08758 7.12848 7.56234 8.12509 8.70627 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024331 B = 0.001617 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.506417 B =17309.254093 C =17843.656304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.068 3.932 3 H 0.063 0.937 4 C -0.145 4.145 5 C -0.141 4.141 6 H 0.131 0.869 7 C 0.513 3.487 8 O -0.579 6.579 9 N -0.611 5.611 10 C 0.063 3.937 11 C 0.120 3.880 12 C -0.117 4.117 13 C 0.061 3.939 14 N -0.546 5.546 15 C 0.029 3.971 16 C 0.059 3.941 17 C 0.440 3.560 18 O -0.616 6.616 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.275 1.275 28 C 0.063 3.937 29 O -0.383 6.383 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.034 0.966 45 H 0.051 0.949 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.105 0.895 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.130 0.870 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.555 1.937 -27.973 31.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.010 3.990 3 H 0.081 0.919 4 C -0.183 4.183 5 C -0.162 4.162 6 H 0.148 0.852 7 C 0.302 3.698 8 O -0.459 6.459 9 N -0.343 5.343 10 C -0.079 4.079 11 C -0.003 4.003 12 C -0.156 4.156 13 C -0.067 4.067 14 N -0.270 5.270 15 C -0.119 4.119 16 C -0.073 4.073 17 C 0.227 3.773 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.200 1.200 28 C -0.014 4.014 29 O -0.302 6.302 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.128 0.872 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.123 0.877 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.148 0.852 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.505 1.781 -27.231 31.386 hybrid contribution 1.391 0.117 1.025 1.732 sum -14.114 1.898 -26.206 29.825 Atomic orbital electron populations 1.21807 0.91661 1.03401 1.03225 1.23088 0.96570 0.95131 0.84190 0.91902 1.23026 0.95953 1.00331 0.98981 1.22728 0.92502 1.03974 0.96989 0.85151 1.20824 0.85505 0.80752 0.82717 1.90694 1.86316 1.35041 1.33848 1.47939 1.06455 1.42284 1.37573 1.22248 1.04834 0.91112 0.89668 1.21434 0.87409 0.98120 0.93368 1.21780 0.97082 1.00359 0.96351 1.22084 0.97550 0.96742 0.90281 1.61460 1.44173 1.03281 1.18131 1.22412 0.99583 0.89668 1.00230 1.21724 0.95046 0.99184 0.91309 1.20813 0.82742 0.86763 0.86943 1.90458 1.43521 1.34381 1.81816 1.41937 1.32574 1.32479 1.14213 1.19661 1.18400 1.15135 0.93130 0.90406 1.26035 0.95019 0.97620 1.02587 1.69674 1.20901 1.28987 1.36568 0.84923 0.78474 0.77968 0.76925 1.19488 1.19512 1.19962 1.23495 0.84596 1.01264 0.92075 1.89136 1.27366 1.74729 1.38999 0.90042 0.91536 0.91351 0.90338 0.88957 0.90148 0.89410 0.89409 0.87246 0.91532 0.94222 0.90787 0.92457 0.90754 0.94779 0.92986 0.90366 0.91147 0.87701 0.77030 0.91309 0.85218 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.52 71.98 0.69 -0.96 16 2 C 0.07 1.02 3.92 31.10 0.12 1.14 16 3 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.14 -2.36 6.21 31.61 0.20 -2.16 16 5 C -0.14 -1.96 2.57 -10.52 -0.03 -1.99 16 6 H 0.13 1.27 7.30 -2.39 -0.02 1.25 16 7 C 0.51 10.35 6.93 87.66 0.61 10.95 16 8 O -0.58 -17.35 14.86 -3.05 -0.05 -17.39 16 9 N -0.61 -9.10 2.87 -846.76 -2.43 -11.53 16 10 C 0.06 0.37 9.08 127.77 1.16 1.53 16 11 C 0.12 1.99 5.41 86.38 0.47 2.45 16 12 C -0.12 -2.52 5.46 30.60 0.17 -2.36 16 13 C 0.06 1.46 4.96 86.30 0.43 1.89 16 14 N -0.55 -18.26 4.50 -927.09 -4.17 -22.44 16 15 C 0.03 0.92 8.96 127.69 1.14 2.06 16 16 C 0.06 2.10 5.45 85.56 0.47 2.57 16 17 C 0.44 21.62 7.47 87.66 0.66 22.28 16 18 O -0.62 -34.97 13.91 -3.08 -0.04 -35.01 16 19 N -0.57 -30.22 5.29 -306.98 -1.62 -31.84 16 20 C -0.33 -19.33 9.68 84.04 0.81 -18.52 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 23 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16 24 Si 0.99 43.59 29.55 68.60 2.03 45.62 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 28 C 0.06 0.71 6.06 72.49 0.44 1.15 16 29 O -0.38 -6.15 11.35 -148.98 -1.69 -7.84 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.08 1.69 6.50 -2.39 -0.02 1.68 16 34 H 0.09 1.27 7.87 -2.39 -0.02 1.25 16 35 H 0.08 0.19 8.00 -2.39 -0.02 0.17 16 36 H 0.09 0.38 8.07 -2.39 -0.02 0.36 16 37 H 0.09 0.28 6.02 -2.39 -0.01 0.27 16 38 H 0.11 1.13 8.07 -2.39 -0.02 1.11 16 39 H 0.07 1.39 7.42 -2.39 -0.02 1.38 16 40 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.44 6.55 -2.39 -0.02 1.43 16 42 H 0.06 1.09 8.12 -2.39 -0.02 1.07 16 43 H 0.07 1.78 7.93 -2.39 -0.02 1.76 16 44 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.05 2.12 5.82 -2.39 -0.01 2.11 16 46 H 0.08 2.14 6.47 -2.39 -0.02 2.12 16 47 H 0.07 2.21 8.12 -2.38 -0.02 2.19 16 48 H 0.10 3.41 7.93 -2.39 -0.02 3.39 16 49 H 0.40 19.73 7.90 -92.71 -0.73 18.99 16 50 H 0.28 14.16 8.31 -92.70 -0.77 13.39 16 51 H 0.13 0.65 7.32 -2.39 -0.02 0.63 16 52 H 0.06 0.71 7.86 -2.39 -0.02 0.70 16 Total: -1.00 -78.34 411.49 0.28 -78.06 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.18 Total: 32.56 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 7.79 Total: 19.80 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -7.94 Total: -115.79 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -1.78 Total: -60.25 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -78.34 0.28 -78.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570200761.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.886 kcal (2) G-P(sol) polarization free energy of solvation -78.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds