Wall clock time and date at job start Wed Apr 1 2020 00:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.75232 * 2 1 4 4 C 1.54381 * 110.84864 * 123.47169 * 2 1 3 5 5 O 1.43232 * 107.59377 * 139.74939 * 4 2 1 6 6 C 1.43653 * 109.96785 * 1.70875 * 5 4 2 7 7 H 1.09006 * 110.30735 * 94.48888 * 6 5 4 8 8 C 1.50697 * 110.30945 * 216.55858 * 6 5 4 9 9 O 1.21281 * 120.00078 * 9.17899 * 8 6 5 10 10 N 1.34776 * 120.00047 * 189.18612 * 8 6 5 11 11 C 1.46501 * 120.00055 * 5.20433 * 10 8 6 12 12 C 1.46497 * 120.00061 * 185.20589 * 10 8 6 13 13 C 1.52998 * 109.47350 * 89.99798 * 12 10 8 14 14 C 1.52995 * 109.47432 * 179.97438 * 13 12 10 15 15 N 1.46904 * 109.47168 * 179.97438 * 14 13 12 16 16 C 1.46895 * 111.00109 * 293.95510 * 15 14 13 17 17 C 1.46899 * 110.99606 * 169.99936 * 15 14 13 18 18 C 1.50708 * 109.46880 * 190.00327 * 17 15 14 19 19 O 1.21292 * 119.99986 * 359.97438 * 18 17 15 20 20 N 1.34775 * 119.99906 * 180.02562 * 18 17 15 21 21 C 1.37096 * 119.99650 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00471 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99992 * 179.97438 * 21 20 18 24 24 N 1.31419 * 119.99713 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00346 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46921 * 60.00262 * 25 23 21 27 27 H 1.48495 * 109.47379 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47246 * 300.00572 * 25 23 21 29 29 C 1.54940 * 105.22354 * 335.52523 * 6 5 4 30 30 H 1.08998 * 109.46920 * 297.98739 * 1 2 3 31 31 H 1.09001 * 109.46632 * 57.98560 * 1 2 3 32 32 H 1.09001 * 109.46948 * 177.98506 * 1 2 3 33 33 H 1.08993 * 109.83111 * 20.23280 * 4 2 1 34 34 H 1.09007 * 109.82904 * 259.26119 * 4 2 1 35 35 H 1.08997 * 109.47002 * 84.80798 * 11 10 8 36 36 H 1.09000 * 109.47066 * 204.81015 * 11 10 8 37 37 H 1.09003 * 109.47252 * 324.81124 * 11 10 8 38 38 H 1.09001 * 109.47199 * 209.99853 * 12 10 8 39 39 H 1.08997 * 109.47205 * 329.99798 * 12 10 8 40 40 H 1.09001 * 109.47014 * 300.00168 * 13 12 10 41 41 H 1.08997 * 109.46967 * 59.99853 * 13 12 10 42 42 H 1.09001 * 109.47171 * 300.00087 * 14 13 12 43 43 H 1.08997 * 109.47152 * 59.99982 * 14 13 12 44 44 H 1.08996 * 109.47127 * 60.00073 * 16 15 14 45 45 H 1.08999 * 109.47089 * 179.97438 * 16 15 14 46 46 H 1.08996 * 109.47203 * 299.99845 * 16 15 14 47 47 H 1.09003 * 109.47495 * 310.00066 * 17 15 14 48 48 H 1.09003 * 109.47533 * 70.00645 * 17 15 14 49 49 H 0.96999 * 120.00029 * 0.02562 * 20 18 17 50 50 H 0.96995 * 119.99579 * 180.02562 * 24 23 21 51 51 H 1.08998 * 111.12700 * 154.41458 * 29 6 5 52 52 H 1.09001 * 111.12573 * 278.57461 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9163 1.0193 0.0000 4 6 2.0795 -0.7957 1.2035 5 8 3.2074 -1.5502 0.7451 6 6 3.4511 -1.2735 -0.6434 7 1 4.1963 -0.4847 -0.7468 8 6 3.9098 -2.5215 -1.3527 9 8 3.8644 -3.5927 -0.7857 10 7 4.3706 -2.4473 -2.6170 11 6 4.5331 -1.1419 -3.2620 12 6 4.7090 -3.6718 -3.3464 13 6 3.4750 -4.1756 -4.0976 14 6 3.8285 -5.4542 -4.8598 15 7 2.6434 -5.9382 -5.5805 16 6 1.5967 -6.3679 -4.6438 17 6 2.9972 -7.0213 -6.5078 18 6 1.8204 -7.3236 -7.3994 19 8 0.7884 -6.6987 -7.2743 20 7 1.9143 -8.2891 -8.3350 21 6 0.8436 -8.5645 -9.1457 22 1 -0.0750 -8.0075 -9.0349 23 6 0.9406 -9.5595 -10.1107 24 7 2.0586 -10.2370 -10.2459 25 14 -0.5180 -9.9343 -11.2158 26 1 -0.8784 -8.7188 -11.9890 27 1 -0.1603 -11.0287 -12.1536 28 1 -1.6747 -10.3528 -10.3839 29 6 2.0879 -0.8032 -1.2099 30 1 -0.3633 0.4823 0.9075 31 1 -0.3632 0.5448 -0.8714 32 1 -0.3633 -1.0270 -0.0361 33 1 1.3120 -1.4709 1.5817 34 1 2.3896 -0.1084 1.9906 35 1 5.5017 -0.7214 -2.9921 36 1 4.4778 -1.2619 -4.3440 37 1 3.7405 -0.4713 -2.9298 38 1 5.5071 -3.4619 -4.0585 39 1 5.0418 -4.4341 -2.6420 40 1 2.6768 -4.3856 -3.3855 41 1 3.1421 -3.4134 -4.8020 42 1 4.6265 -5.2438 -5.5719 43 1 4.1616 -6.2166 -4.1557 44 1 1.3041 -5.5270 -4.0152 45 1 0.7307 -6.7210 -5.2037 46 1 1.9783 -7.1742 -4.0175 47 1 3.8462 -6.7140 -7.1185 48 1 3.2618 -7.9135 -5.9403 49 1 2.7393 -8.7896 -8.4343 50 1 2.1264 -10.9313 -10.9198 51 1 2.2245 -0.1615 -2.0803 52 1 1.4469 -1.6523 -1.4470 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570202510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:11 Heat of formation + Delta-G solvation = -108.086994 kcal Electronic energy + Delta-G solvation = -29941.514281 eV Core-core repulsion = 25748.439108 eV Total energy + Delta-G solvation = -4193.075173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.86256 -39.09337 -38.56706 -36.83484 -35.83750 -34.02836 -33.86556 -32.48890 -31.21151 -30.49062 -27.91686 -27.36846 -26.89137 -26.27822 -24.91450 -23.80241 -22.53444 -21.21699 -20.69714 -19.43215 -19.08357 -18.04315 -17.80460 -17.02338 -16.41923 -15.94344 -15.89858 -15.72041 -15.32546 -15.03180 -14.71678 -14.52173 -14.23787 -14.20854 -13.85029 -13.66927 -13.49974 -13.36916 -13.23653 -13.22744 -12.83634 -12.76907 -12.23324 -12.07745 -11.99262 -11.96499 -11.67135 -11.56320 -11.49214 -11.42949 -11.23693 -11.19840 -11.14118 -10.86966 -10.53595 -10.42384 -10.28675 -10.18947 -9.67858 -9.44122 -8.96845 -8.40166 -7.94550 -7.79582 -6.39066 -3.79748 2.27852 2.46434 3.21647 3.27054 3.31478 3.48110 3.79354 3.94214 4.02490 4.11112 4.22123 4.28740 4.49347 4.55728 4.64479 4.71893 4.84687 4.89599 4.93935 5.08225 5.10144 5.15713 5.17929 5.23398 5.27333 5.28796 5.29167 5.34894 5.39081 5.46058 5.56652 5.57374 5.66963 5.75616 5.77551 5.81398 5.98526 6.04158 6.05733 6.17120 6.28063 6.33324 6.48119 6.63981 7.03399 7.34348 7.46023 7.57502 7.90151 8.09275 8.65202 9.20886 9.57737 10.10035 10.78692 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020166 B = 0.001761 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.154177 B =15895.527763 C =16619.570483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 H 0.089 0.911 4 C 0.052 3.948 5 O -0.355 6.355 6 C 0.066 3.934 7 H 0.094 0.906 8 C 0.513 3.487 9 O -0.516 6.516 10 N -0.614 5.614 11 C 0.070 3.930 12 C 0.116 3.884 13 C -0.129 4.129 14 C 0.058 3.942 15 N -0.519 5.519 16 C 0.022 3.978 17 C 0.046 3.954 18 C 0.445 3.555 19 O -0.578 6.578 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C -0.142 4.142 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.014 0.986 47 H 0.087 0.913 48 H 0.047 0.953 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.094 0.906 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.307 22.161 18.377 29.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 H 0.107 0.893 4 C -0.025 4.025 5 O -0.273 6.273 6 C 0.005 3.995 7 H 0.111 0.889 8 C 0.300 3.700 9 O -0.390 6.390 10 N -0.349 5.349 11 C -0.073 4.073 12 C -0.006 4.006 13 C -0.168 4.168 14 C -0.071 4.071 15 N -0.242 5.242 16 C -0.126 4.126 17 C -0.086 4.086 18 C 0.230 3.770 19 O -0.462 6.462 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.180 4.180 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.032 0.968 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.112 0.888 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.566 22.084 18.496 29.339 hybrid contribution 0.137 -0.993 -0.410 1.083 sum 5.702 21.091 18.086 28.363 Atomic orbital electron populations 1.21739 0.93157 1.02767 1.02444 1.22774 0.97566 0.99889 0.94141 0.89300 1.23328 0.88499 0.94415 0.96251 1.88529 1.48961 1.67602 1.22209 1.22813 0.98323 0.94900 0.83496 0.88870 1.20450 0.77599 0.90587 0.81407 1.90734 1.52848 1.30148 1.65241 1.47758 1.65950 1.07798 1.13419 1.21981 1.01683 0.84206 0.99439 1.21505 0.97262 0.86327 0.95549 1.21920 0.97953 0.97789 0.99146 1.22031 0.93066 0.95714 0.96325 1.61565 1.08715 1.35609 1.18350 1.22548 0.96706 0.98393 0.94946 1.21866 0.98187 0.93156 0.95373 1.19758 0.89421 0.83596 0.84212 1.90477 1.31258 1.52472 1.71986 1.41863 1.15538 1.32016 1.30777 1.19644 0.94223 1.17210 1.11724 0.88001 1.25261 0.98095 0.96356 0.98297 1.69609 1.25755 1.23702 1.35337 0.85916 0.80825 0.77994 0.79463 1.19926 1.21012 1.19949 1.23428 0.94757 1.01089 0.98706 0.91981 0.91835 0.91943 0.90758 0.90949 0.92310 0.90081 0.91066 0.90163 0.89733 0.91462 0.90821 0.90856 0.95004 0.92207 0.88729 0.96788 0.89449 0.93510 0.77497 0.91867 0.88754 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.16 37.16 0.34 -0.37 16 2 C -0.13 -0.68 3.59 -88.53 -0.32 -1.00 16 3 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 4 C 0.05 0.39 7.40 37.88 0.28 0.67 16 5 O -0.35 -4.01 10.62 -54.40 -0.58 -4.59 16 6 C 0.07 0.58 2.91 -26.86 -0.08 0.50 16 7 H 0.09 0.59 7.61 -51.93 -0.40 0.20 16 8 C 0.51 6.01 7.01 -10.99 -0.08 5.93 16 9 O -0.52 -8.47 16.13 -13.61 -0.22 -8.69 16 10 N -0.61 -5.60 2.87 -181.58 -0.52 -6.13 16 11 C 0.07 0.36 9.95 59.85 0.60 0.96 16 12 C 0.12 1.14 5.42 -4.04 -0.02 1.12 16 13 C -0.13 -1.51 5.46 -26.73 -0.15 -1.66 16 14 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 15 N -0.52 -8.98 4.50 -244.37 -1.10 -10.08 16 16 C 0.02 0.38 8.96 60.06 0.54 0.92 16 17 C 0.05 0.84 5.45 -4.97 -0.03 0.81 16 18 C 0.44 10.68 7.48 -10.98 -0.08 10.60 16 19 O -0.58 -15.76 13.91 5.55 0.08 -15.68 16 20 N -0.57 -14.51 5.29 -10.96 -0.06 -14.57 16 21 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 24 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 25 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 C -0.14 -0.94 5.54 -24.34 -0.13 -1.07 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.37 8.13 -51.93 -0.42 -0.06 16 33 H 0.07 0.56 7.81 -51.93 -0.41 0.16 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.37 8.03 -51.93 -0.42 -0.05 16 37 H 0.07 0.27 4.79 -51.93 -0.25 0.02 16 38 H 0.08 0.60 8.07 -51.93 -0.42 0.19 16 39 H 0.08 0.97 7.36 -51.93 -0.38 0.59 16 40 H 0.07 0.92 6.55 -51.93 -0.34 0.58 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 43 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 44 H 0.06 0.96 6.47 -51.93 -0.34 0.62 16 45 H 0.09 1.97 5.82 -51.93 -0.30 1.67 16 46 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 47 H 0.09 1.44 7.93 -51.93 -0.41 1.02 16 48 H 0.05 0.81 8.12 -51.93 -0.42 0.38 16 49 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 50 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 51 H 0.09 0.41 6.39 -51.93 -0.33 0.07 16 52 H 0.09 0.74 7.95 -51.93 -0.41 0.32 16 LS Contribution 413.16 15.07 6.23 6.23 Total: -1.00 -35.56 413.16 -8.74 -44.29 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -8.87 Total: 6.93 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 0.61 Total: 10.10 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.96 Total: -54.78 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.72 Total: -28.96 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.56 -8.74 -44.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570202510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.793 kcal (2) G-P(sol) polarization free energy of solvation -35.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds