Wall clock time and date at job start Wed Apr 1 2020 00:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.75232 * 2 1 4 4 C 1.54381 * 110.84864 * 123.47169 * 2 1 3 5 5 O 1.43232 * 107.59377 * 139.74939 * 4 2 1 6 6 C 1.43653 * 109.96785 * 1.70875 * 5 4 2 7 7 H 1.09006 * 110.30735 * 94.48888 * 6 5 4 8 8 C 1.50697 * 110.30945 * 216.55858 * 6 5 4 9 9 O 1.21281 * 120.00078 * 9.17899 * 8 6 5 10 10 N 1.34776 * 120.00047 * 189.18612 * 8 6 5 11 11 C 1.46501 * 120.00055 * 5.20433 * 10 8 6 12 12 C 1.46497 * 120.00061 * 185.20589 * 10 8 6 13 13 C 1.52998 * 109.47350 * 89.99798 * 12 10 8 14 14 C 1.52995 * 109.47432 * 179.97438 * 13 12 10 15 15 N 1.46904 * 109.47168 * 179.97438 * 14 13 12 16 16 C 1.46895 * 111.00109 * 293.95510 * 15 14 13 17 17 C 1.46899 * 110.99606 * 169.99936 * 15 14 13 18 18 C 1.50708 * 109.46880 * 190.00327 * 17 15 14 19 19 O 1.21292 * 119.99986 * 359.97438 * 18 17 15 20 20 N 1.34775 * 119.99906 * 180.02562 * 18 17 15 21 21 C 1.37096 * 119.99650 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00471 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99992 * 179.97438 * 21 20 18 24 24 N 1.31419 * 119.99713 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00346 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46921 * 60.00262 * 25 23 21 27 27 H 1.48495 * 109.47379 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47246 * 300.00572 * 25 23 21 29 29 C 1.54940 * 105.22354 * 335.52523 * 6 5 4 30 30 H 1.08998 * 109.46920 * 297.98739 * 1 2 3 31 31 H 1.09001 * 109.46632 * 57.98560 * 1 2 3 32 32 H 1.09001 * 109.46948 * 177.98506 * 1 2 3 33 33 H 1.08993 * 109.83111 * 20.23280 * 4 2 1 34 34 H 1.09007 * 109.82904 * 259.26119 * 4 2 1 35 35 H 1.08997 * 109.47002 * 84.80798 * 11 10 8 36 36 H 1.09000 * 109.47066 * 204.81015 * 11 10 8 37 37 H 1.09003 * 109.47252 * 324.81124 * 11 10 8 38 38 H 1.09001 * 109.47199 * 209.99853 * 12 10 8 39 39 H 1.08997 * 109.47205 * 329.99798 * 12 10 8 40 40 H 1.09001 * 109.47014 * 300.00168 * 13 12 10 41 41 H 1.08997 * 109.46967 * 59.99853 * 13 12 10 42 42 H 1.09001 * 109.47171 * 300.00087 * 14 13 12 43 43 H 1.08997 * 109.47152 * 59.99982 * 14 13 12 44 44 H 1.08996 * 109.47127 * 60.00073 * 16 15 14 45 45 H 1.08999 * 109.47089 * 179.97438 * 16 15 14 46 46 H 1.08996 * 109.47203 * 299.99845 * 16 15 14 47 47 H 1.09003 * 109.47495 * 310.00066 * 17 15 14 48 48 H 1.09003 * 109.47533 * 70.00645 * 17 15 14 49 49 H 0.96999 * 120.00029 * 0.02562 * 20 18 17 50 50 H 0.96995 * 119.99579 * 180.02562 * 24 23 21 51 51 H 1.08998 * 111.12700 * 154.41458 * 29 6 5 52 52 H 1.09001 * 111.12573 * 278.57461 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9163 1.0193 0.0000 4 6 2.0795 -0.7957 1.2035 5 8 3.2074 -1.5502 0.7451 6 6 3.4511 -1.2735 -0.6434 7 1 4.1963 -0.4847 -0.7468 8 6 3.9098 -2.5215 -1.3527 9 8 3.8644 -3.5927 -0.7857 10 7 4.3706 -2.4473 -2.6170 11 6 4.5331 -1.1419 -3.2620 12 6 4.7090 -3.6718 -3.3464 13 6 3.4750 -4.1756 -4.0976 14 6 3.8285 -5.4542 -4.8598 15 7 2.6434 -5.9382 -5.5805 16 6 1.5967 -6.3679 -4.6438 17 6 2.9972 -7.0213 -6.5078 18 6 1.8204 -7.3236 -7.3994 19 8 0.7884 -6.6987 -7.2743 20 7 1.9143 -8.2891 -8.3350 21 6 0.8436 -8.5645 -9.1457 22 1 -0.0750 -8.0075 -9.0349 23 6 0.9406 -9.5595 -10.1107 24 7 2.0586 -10.2370 -10.2459 25 14 -0.5180 -9.9343 -11.2158 26 1 -0.8784 -8.7188 -11.9890 27 1 -0.1603 -11.0287 -12.1536 28 1 -1.6747 -10.3528 -10.3839 29 6 2.0879 -0.8032 -1.2099 30 1 -0.3633 0.4823 0.9075 31 1 -0.3632 0.5448 -0.8714 32 1 -0.3633 -1.0270 -0.0361 33 1 1.3120 -1.4709 1.5817 34 1 2.3896 -0.1084 1.9906 35 1 5.5017 -0.7214 -2.9921 36 1 4.4778 -1.2619 -4.3440 37 1 3.7405 -0.4713 -2.9298 38 1 5.5071 -3.4619 -4.0585 39 1 5.0418 -4.4341 -2.6420 40 1 2.6768 -4.3856 -3.3855 41 1 3.1421 -3.4134 -4.8020 42 1 4.6265 -5.2438 -5.5719 43 1 4.1616 -6.2166 -4.1557 44 1 1.3041 -5.5270 -4.0152 45 1 0.7307 -6.7210 -5.2037 46 1 1.9783 -7.1742 -4.0175 47 1 3.8462 -6.7140 -7.1185 48 1 3.2618 -7.9135 -5.9403 49 1 2.7393 -8.7896 -8.4343 50 1 2.1264 -10.9313 -10.9198 51 1 2.2245 -0.1615 -2.0803 52 1 1.4469 -1.6523 -1.4470 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570202510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:08 Heat of formation + Delta-G solvation = -133.778477 kcal Electronic energy + Delta-G solvation = -29942.628347 eV Core-core repulsion = 25748.439108 eV Total energy + Delta-G solvation = -4194.189240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.59134 -40.40232 -39.75680 -38.21920 -36.81139 -35.87577 -34.58116 -33.49130 -33.23275 -31.22551 -29.41134 -28.15353 -27.50068 -27.16975 -26.58658 -24.89016 -23.47741 -21.95474 -21.61659 -20.98404 -20.14202 -19.83810 -18.72180 -17.88584 -17.64129 -17.07013 -16.74275 -16.65974 -16.54176 -16.32795 -16.29057 -15.79338 -15.41553 -15.26159 -14.95388 -14.81750 -14.62756 -14.38626 -13.99626 -13.94052 -13.77607 -13.48660 -13.41295 -13.27817 -13.15653 -13.00669 -12.90473 -12.72095 -12.60243 -12.52872 -12.41317 -12.28626 -12.15425 -12.11705 -11.99088 -11.69867 -11.55208 -11.44946 -11.00900 -10.45602 -10.28508 -9.99616 -9.71187 -9.24030 -8.45637 -5.94307 1.40006 1.41567 1.45176 1.52655 1.76736 2.06123 2.29010 2.76538 2.90246 3.20899 3.25159 3.41837 3.51124 3.75643 3.89242 3.98131 4.02413 4.09784 4.14264 4.20316 4.26950 4.35944 4.37909 4.43817 4.50560 4.52262 4.56374 4.58715 4.62675 4.68359 4.71625 4.73757 4.76572 4.82172 4.87375 4.94084 5.02100 5.05675 5.13358 5.17168 5.26449 5.35623 5.41508 5.51218 5.85959 5.88539 6.05295 6.19655 6.32057 6.61789 7.09038 7.13723 7.57316 8.13434 8.71524 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020166 B = 0.001761 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.154177 B =15895.527763 C =16619.570483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.116 0.884 4 C 0.043 3.957 5 O -0.393 6.393 6 C 0.065 3.935 7 H 0.126 0.874 8 C 0.503 3.497 9 O -0.578 6.578 10 N -0.609 5.609 11 C 0.061 3.939 12 C 0.119 3.881 13 C -0.117 4.117 14 C 0.059 3.941 15 N -0.534 5.534 16 C 0.030 3.970 17 C 0.057 3.943 18 C 0.441 3.559 19 O -0.615 6.615 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.273 1.273 29 C -0.138 4.138 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.035 0.965 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.021 0.979 47 H 0.116 0.884 48 H 0.063 0.937 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.124 0.876 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.502 24.405 17.668 31.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 H 0.134 0.866 4 C -0.033 4.033 5 O -0.312 6.312 6 C 0.005 3.995 7 H 0.143 0.857 8 C 0.291 3.709 9 O -0.457 6.457 10 N -0.342 5.342 11 C -0.080 4.080 12 C -0.004 4.004 13 C -0.156 4.156 14 C -0.069 4.069 15 N -0.259 5.259 16 C -0.118 4.118 17 C -0.074 4.074 18 C 0.228 3.772 19 O -0.501 6.501 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.176 4.176 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.130 0.870 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.116 0.884 43 H 0.053 0.947 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.040 0.960 47 H 0.134 0.866 48 H 0.081 0.919 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.143 0.857 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.794 24.365 17.769 30.913 hybrid contribution -0.214 -1.650 -0.152 1.671 sum 6.581 22.715 17.617 29.490 Atomic orbital electron populations 1.21744 0.92925 1.01964 1.03455 1.22784 0.97661 1.00584 0.92288 0.86606 1.23518 0.87606 0.94505 0.97672 1.88488 1.50218 1.68904 1.23632 1.23024 1.00085 0.93985 0.82452 0.85709 1.21149 0.76873 0.90826 0.82056 1.90695 1.55664 1.32459 1.66907 1.47879 1.64461 1.09149 1.12708 1.22307 1.03489 0.82355 0.99882 1.21444 0.97015 0.86470 0.95443 1.21787 0.98063 0.97305 0.98426 1.22135 0.91907 0.96086 0.96739 1.61541 1.10364 1.35105 1.18856 1.22368 0.95806 0.99011 0.94618 1.21766 0.96047 0.94499 0.95125 1.20775 0.90489 0.82138 0.83769 1.90456 1.33314 1.53481 1.72860 1.41930 1.15210 1.32792 1.31249 1.19618 0.94529 1.18443 1.13645 0.90342 1.26048 1.00780 0.95571 0.98978 1.69671 1.26999 1.23753 1.35720 0.84984 0.77549 0.78088 0.77681 1.19629 1.19479 1.19842 1.23447 0.93087 1.00795 1.00256 0.90904 0.90875 0.93692 0.91990 0.89201 0.90305 0.88948 0.89368 0.86951 0.91852 0.94158 0.90512 0.88355 0.94701 0.91210 0.92452 0.96008 0.86631 0.91888 0.77019 0.91326 0.85748 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.16 71.98 0.66 -0.57 16 2 C -0.11 -1.03 3.59 -9.44 -0.03 -1.07 16 3 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 4 C 0.04 0.62 7.40 72.45 0.54 1.16 16 5 O -0.39 -8.96 10.62 -130.66 -1.39 -10.35 16 6 C 0.06 1.07 2.91 30.51 0.09 1.16 16 7 H 0.13 1.22 7.61 -2.38 -0.02 1.20 16 8 C 0.50 11.76 7.01 87.66 0.61 12.38 16 9 O -0.58 -20.04 16.13 15.29 0.25 -19.79 16 10 N -0.61 -10.17 2.87 -846.78 -2.43 -12.61 16 11 C 0.06 0.42 9.95 127.77 1.27 1.69 16 12 C 0.12 2.16 5.42 86.38 0.47 2.63 16 13 C -0.12 -2.61 5.46 30.59 0.17 -2.44 16 14 C 0.06 1.45 4.96 86.30 0.43 1.88 16 15 N -0.53 -18.05 4.50 -927.06 -4.17 -22.22 16 16 C 0.03 1.08 8.96 127.69 1.14 2.22 16 17 C 0.06 2.03 5.45 85.56 0.47 2.49 16 18 C 0.44 21.45 7.48 87.66 0.66 22.10 16 19 O -0.61 -34.56 13.91 -3.07 -0.04 -34.60 16 20 N -0.57 -29.94 5.29 -306.98 -1.62 -31.56 16 21 C -0.33 -19.12 9.68 84.04 0.81 -18.30 16 22 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 24 N -0.92 -50.08 13.05 21.67 0.28 -49.80 16 25 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 29 C -0.14 -1.60 5.54 32.14 0.18 -1.42 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.04 0.54 8.13 -2.39 -0.02 0.52 16 33 H 0.06 1.00 7.81 -2.39 -0.02 0.98 16 34 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.09 0.49 8.03 -2.39 -0.02 0.47 16 37 H 0.09 0.32 4.79 -2.39 -0.01 0.30 16 38 H 0.11 1.32 8.07 -2.39 -0.02 1.31 16 39 H 0.06 1.45 7.36 -2.39 -0.02 1.43 16 40 H 0.04 1.12 6.55 -2.39 -0.02 1.10 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.10 1.95 7.93 -2.39 -0.02 1.93 16 43 H 0.03 0.85 8.12 -2.39 -0.02 0.83 16 44 H 0.07 2.30 6.47 -2.39 -0.02 2.29 16 45 H 0.06 2.49 5.82 -2.39 -0.01 2.47 16 46 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.12 3.50 7.93 -2.39 -0.02 3.48 16 48 H 0.06 2.07 8.12 -2.39 -0.02 2.06 16 49 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 50 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 51 H 0.12 0.64 6.39 -2.39 -0.02 0.63 16 52 H 0.06 1.06 7.95 -2.39 -0.02 1.04 16 Total: -1.00 -81.43 413.16 1.00 -80.43 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.18 Total: 31.55 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 7.92 Total: 23.62 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -7.94 Total: -116.19 kcal Atomic # 8 Polarization: -63.57 SS G_CDS: -1.18 Total: -64.75 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -81.43 1.00 -80.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570202510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.349 kcal (2) G-P(sol) polarization free energy of solvation -81.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds