Wall clock time and date at job start Wed Apr 1 2020 00:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 110.82450 * 2 1 4 4 C 1.54993 * 110.90549 * 123.63995 * 2 1 3 5 5 O 1.44380 * 103.48779 * 155.22624 * 4 2 1 6 6 C 1.43749 * 106.97606 * 319.94060 * 5 4 2 7 7 H 1.09000 * 109.87712 * 266.93950 * 6 5 4 8 8 C 1.50694 * 109.87877 * 145.93730 * 6 5 4 9 9 O 1.21283 * 120.00363 * 356.45407 * 8 6 5 10 10 N 1.34784 * 119.99988 * 176.45525 * 8 6 5 11 11 C 1.46494 * 119.99635 * 0.02562 * 10 8 6 12 12 C 1.46493 * 119.99864 * 179.72721 * 10 8 6 13 13 C 1.53000 * 109.47637 * 90.00039 * 12 10 8 14 14 C 1.52994 * 109.47472 * 179.97438 * 13 12 10 15 15 N 1.46903 * 109.47180 * 179.97438 * 14 13 12 16 16 C 1.46902 * 110.99923 * 66.04754 * 15 14 13 17 17 C 1.46903 * 111.00047 * 190.00120 * 15 14 13 18 18 C 1.50697 * 109.47030 * 169.99956 * 17 15 14 19 19 O 1.21291 * 120.00103 * 0.02562 * 18 17 15 20 20 N 1.34778 * 119.99894 * 180.02562 * 18 17 15 21 21 C 1.37099 * 119.99943 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99899 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99881 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99715 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99775 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47265 * 89.99874 * 25 23 21 27 27 H 1.48502 * 109.47049 * 209.99897 * 25 23 21 28 28 H 1.48498 * 109.47364 * 329.99579 * 25 23 21 29 29 C 1.54100 * 107.29336 * 26.51523 * 6 5 4 30 30 H 1.08992 * 109.47106 * 297.80891 * 1 2 3 31 31 H 1.08996 * 109.46608 * 57.81341 * 1 2 3 32 32 H 1.08997 * 109.46369 * 177.80895 * 1 2 3 33 33 H 1.09005 * 110.62005 * 36.72666 * 4 2 1 34 34 H 1.08996 * 110.62001 * 273.72558 * 4 2 1 35 35 H 1.08995 * 109.47693 * 90.00207 * 11 10 8 36 36 H 1.09003 * 109.47006 * 210.00121 * 11 10 8 37 37 H 1.09004 * 109.47665 * 329.99813 * 11 10 8 38 38 H 1.09002 * 109.47192 * 209.99937 * 12 10 8 39 39 H 1.08996 * 109.47342 * 329.99648 * 12 10 8 40 40 H 1.09002 * 109.46747 * 300.00171 * 13 12 10 41 41 H 1.08996 * 109.47074 * 59.99445 * 13 12 10 42 42 H 1.08993 * 109.47409 * 300.00238 * 14 13 12 43 43 H 1.09008 * 109.47165 * 60.00188 * 14 13 12 44 44 H 1.09001 * 109.46835 * 60.00189 * 16 15 14 45 45 H 1.08999 * 109.47230 * 179.97438 * 16 15 14 46 46 H 1.08998 * 109.46531 * 299.99974 * 16 15 14 47 47 H 1.08995 * 109.46879 * 290.00032 * 17 15 14 48 48 H 1.09000 * 109.46809 * 50.00258 * 17 15 14 49 49 H 0.96999 * 119.99670 * 359.97438 * 20 18 17 50 50 H 0.97003 * 119.99101 * 179.97438 * 24 23 21 51 51 H 1.08993 * 110.49032 * 116.64829 * 29 6 5 52 52 H 1.09005 * 110.48703 * 239.29934 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0831 -0.8021 1.2054 5 8 3.3942 -1.2142 0.7627 6 6 3.2720 -1.5881 -0.6199 7 1 3.0854 -2.6591 -0.6990 8 6 4.5351 -1.2321 -1.3606 9 8 5.4314 -0.6507 -0.7865 10 7 4.6688 -1.5598 -2.6611 11 6 3.5859 -2.2615 -3.3547 12 6 5.8943 -1.2084 -3.3828 13 6 6.9060 -2.3490 -3.2557 14 6 8.1856 -1.9823 -4.0099 15 7 9.1572 -3.0773 -3.8873 16 6 8.6798 -4.2842 -4.5754 17 6 10.4755 -2.6703 -4.3918 18 6 11.4971 -3.7173 -4.0296 19 8 11.1600 -4.7055 -3.4124 20 7 12.7852 -3.5556 -4.3916 21 6 13.7145 -4.5084 -4.0625 22 1 13.4143 -5.3887 -3.5136 23 6 15.0425 -4.3419 -4.4362 24 7 15.4074 -3.2714 -5.1054 25 14 16.3084 -5.6403 -3.9884 26 1 16.3882 -6.6494 -5.0750 27 1 17.6354 -4.9976 -3.8114 28 1 15.9083 -6.3063 -2.7229 29 6 2.0826 -0.8013 -1.2039 30 1 -0.3633 0.4794 0.9089 31 1 -0.3632 0.5474 -0.8697 32 1 -0.3632 -1.0269 -0.0393 33 1 1.4563 -1.6703 1.4089 34 1 2.1582 -0.1663 2.0876 35 1 2.9055 -1.5336 -3.7964 36 1 4.0051 -2.8904 -4.1402 37 1 3.0415 -2.8830 -2.6436 38 1 5.6620 -1.0444 -4.4350 39 1 6.3177 -0.2982 -2.9581 40 1 7.1383 -2.5130 -2.2034 41 1 6.4826 -3.2592 -3.6803 42 1 7.9530 -1.8185 -5.0620 43 1 8.6093 -1.0719 -3.5855 44 1 8.5318 -4.0649 -5.6328 45 1 9.4181 -5.0790 -4.4694 46 1 7.7354 -4.6038 -4.1349 47 1 10.4327 -2.5641 -5.4757 48 1 10.7575 -1.7174 -3.9441 49 1 13.0546 -2.7655 -4.8855 50 1 16.3346 -3.1551 -5.3659 51 1 2.4210 -0.1254 -1.9891 52 1 1.3247 -1.4844 -1.5875 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570202511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:26 Heat of formation + Delta-G solvation = -107.773197 kcal Electronic energy + Delta-G solvation = -29714.485763 eV Core-core repulsion = 25521.424197 eV Total energy + Delta-G solvation = -4193.061566 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.90204 -39.05638 -38.54707 -36.81794 -35.83323 -34.04620 -33.84388 -32.51231 -31.18896 -30.40421 -27.92295 -27.33581 -26.88928 -26.27481 -24.90093 -23.86131 -22.51868 -21.15673 -20.71226 -19.70829 -19.07476 -17.78784 -17.69495 -16.94835 -16.52413 -16.12047 -15.72628 -15.64844 -15.29331 -15.11325 -14.67564 -14.56486 -14.31795 -14.22284 -13.89576 -13.61493 -13.45701 -13.38122 -13.29241 -13.22243 -12.80645 -12.73413 -12.22099 -12.11392 -11.97024 -11.87323 -11.82736 -11.59048 -11.43059 -11.31073 -11.29068 -11.19530 -11.15156 -10.87321 -10.51518 -10.43580 -10.35208 -10.17171 -9.68667 -9.42909 -8.97293 -8.37889 -7.92183 -7.77285 -6.37024 -3.77519 2.32328 2.50543 3.21220 3.29539 3.36008 3.48395 3.85073 3.96499 4.06543 4.10819 4.20680 4.30410 4.33141 4.61762 4.68065 4.76625 4.85259 4.89375 4.93089 5.03291 5.09529 5.11412 5.16423 5.17944 5.22999 5.25396 5.26791 5.30565 5.38451 5.44585 5.51554 5.52033 5.66064 5.67126 5.77852 5.78755 5.99489 6.03931 6.09519 6.12869 6.32185 6.35767 6.40397 6.61784 7.04073 7.35700 7.48501 7.59905 7.93409 8.11800 8.67525 9.23281 9.60050 10.12408 10.80869 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.028368 B = 0.001599 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.796870 B =17508.773289 C =17874.849721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 H 0.088 0.912 4 C 0.048 3.952 5 O -0.346 6.346 6 C 0.062 3.938 7 H 0.094 0.906 8 C 0.511 3.489 9 O -0.511 6.511 10 N -0.615 5.615 11 C 0.075 3.925 12 C 0.118 3.882 13 C -0.130 4.130 14 C 0.059 3.941 15 N -0.519 5.519 16 C 0.022 3.978 17 C 0.046 3.954 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.270 1.270 29 C -0.141 4.141 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.029 0.971 43 H 0.074 0.926 44 H 0.012 0.988 45 H 0.094 0.906 46 H 0.059 0.941 47 H 0.046 0.954 48 H 0.088 0.912 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.082 0.918 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.725 7.765 2.152 33.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 H 0.107 0.893 4 C -0.029 4.029 5 O -0.264 6.264 6 C 0.000 4.000 7 H 0.112 0.888 8 C 0.298 3.702 9 O -0.384 6.384 10 N -0.351 5.351 11 C -0.068 4.068 12 C -0.005 4.005 13 C -0.169 4.169 14 C -0.070 4.070 15 N -0.243 5.243 16 C -0.126 4.126 17 C -0.085 4.085 18 C 0.230 3.770 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.179 4.179 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.030 0.970 45 H 0.113 0.887 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.106 0.894 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.101 0.899 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -32.019 7.351 3.454 33.033 hybrid contribution 0.579 0.028 -1.260 1.387 sum -31.440 7.379 2.194 32.369 Atomic orbital electron populations 1.21723 0.93450 1.02294 1.02439 1.22764 0.96785 1.00572 0.94496 0.89343 1.23739 0.83958 0.97756 0.97455 1.89048 1.29018 1.86160 1.22125 1.22629 0.93344 0.99954 0.84044 0.88835 1.20459 0.88626 0.79405 0.81730 1.90756 1.41452 1.39783 1.66455 1.47780 1.18179 1.58905 1.10235 1.21900 0.90029 0.96817 0.98101 1.21482 0.83965 0.98978 0.96051 1.21919 0.94278 0.97966 1.02700 1.22028 0.92446 0.94790 0.97720 1.61520 1.01035 1.04343 1.57377 1.22553 1.01642 0.94278 0.94080 1.21861 0.89711 0.98964 0.97976 1.19761 0.83350 0.88663 0.85204 1.90481 1.79678 1.31744 1.44207 1.41868 1.06093 1.22104 1.50173 1.19704 0.87609 1.01926 1.33509 0.87939 1.25251 0.98090 0.97701 0.96940 1.69620 1.18681 1.27205 1.38924 0.85858 0.79331 0.80044 0.79055 1.20488 1.20954 1.19424 1.23049 0.96443 0.99431 0.98993 0.92010 0.92064 0.92195 0.91694 0.88468 0.92337 0.90536 0.91102 0.90489 0.89629 0.90415 0.91751 0.95244 0.90739 0.96956 0.88716 0.92218 0.93560 0.89395 0.77509 0.91944 0.89950 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.47 9.19 37.16 0.34 -0.13 16 2 C -0.13 -0.70 3.72 -88.61 -0.33 -1.03 16 3 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.05 0.33 7.17 38.21 0.27 0.60 16 5 O -0.35 -3.98 10.74 -54.80 -0.59 -4.57 16 6 C 0.06 0.55 2.97 -27.31 -0.08 0.47 16 7 H 0.09 0.65 7.17 -51.93 -0.37 0.28 16 8 C 0.51 6.10 6.86 -10.98 -0.08 6.02 16 9 O -0.51 -8.66 16.11 -14.01 -0.23 -8.88 16 10 N -0.62 -5.61 2.87 -181.58 -0.52 -6.14 16 11 C 0.07 0.37 9.23 59.84 0.55 0.92 16 12 C 0.12 1.16 5.41 -4.05 -0.02 1.14 16 13 C -0.13 -1.58 5.46 -26.73 -0.15 -1.72 16 14 C 0.06 0.79 4.96 -3.83 -0.02 0.77 16 15 N -0.52 -9.18 4.50 -244.37 -1.10 -10.28 16 16 C 0.02 0.38 8.96 60.07 0.54 0.91 16 17 C 0.05 0.87 5.45 -4.98 -0.03 0.84 16 18 C 0.44 10.88 7.47 -10.99 -0.08 10.80 16 19 O -0.58 -16.04 13.91 5.55 0.08 -15.96 16 20 N -0.57 -14.74 5.29 -10.96 -0.06 -14.79 16 21 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.99 13.05 55.50 0.72 -24.27 16 25 Si 0.93 21.47 29.55 -169.99 -5.02 16.44 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 29 C -0.14 -0.77 4.85 -25.20 -0.12 -0.90 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.06 0.16 8.10 -51.93 -0.42 -0.26 16 33 H 0.06 0.34 8.05 -51.93 -0.42 -0.07 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.19 7.89 -51.93 -0.41 -0.22 16 36 H 0.08 0.33 8.07 -51.93 -0.42 -0.08 16 37 H 0.07 0.26 6.19 -51.93 -0.32 -0.06 16 38 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 39 H 0.09 0.98 7.42 -51.93 -0.39 0.60 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 0.74 6.55 -51.93 -0.34 0.40 16 42 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 43 H 0.07 0.99 7.93 -51.92 -0.41 0.58 16 44 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.09 1.94 5.82 -51.93 -0.30 1.64 16 46 H 0.06 0.88 6.47 -51.93 -0.34 0.55 16 47 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 48 H 0.09 1.52 7.93 -51.93 -0.41 1.11 16 49 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 50 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 51 H 0.08 0.47 7.38 -51.93 -0.38 0.09 16 52 H 0.09 0.27 7.83 -51.93 -0.41 -0.14 16 LS Contribution 413.59 15.07 6.23 6.23 Total: -1.00 -36.48 413.59 -8.89 -45.37 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -8.97 Total: 6.29 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 0.56 Total: 10.56 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.96 Total: -55.48 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.74 Total: -29.42 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.48 -8.89 -45.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570202511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.399 kcal (2) G-P(sol) polarization free energy of solvation -36.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds