Wall clock time and date at job start Wed Apr 1 2020 00:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 110.82450 * 2 1 4 4 C 1.54993 * 110.90549 * 123.63995 * 2 1 3 5 5 O 1.44380 * 103.48779 * 155.22624 * 4 2 1 6 6 C 1.43749 * 106.97606 * 319.94060 * 5 4 2 7 7 H 1.09000 * 109.87712 * 266.93950 * 6 5 4 8 8 C 1.50694 * 109.87877 * 145.93730 * 6 5 4 9 9 O 1.21283 * 120.00363 * 356.45407 * 8 6 5 10 10 N 1.34784 * 119.99988 * 176.45525 * 8 6 5 11 11 C 1.46494 * 119.99635 * 0.02562 * 10 8 6 12 12 C 1.46493 * 119.99864 * 179.72721 * 10 8 6 13 13 C 1.53000 * 109.47637 * 90.00039 * 12 10 8 14 14 C 1.52994 * 109.47472 * 179.97438 * 13 12 10 15 15 N 1.46903 * 109.47180 * 179.97438 * 14 13 12 16 16 C 1.46902 * 110.99923 * 66.04754 * 15 14 13 17 17 C 1.46903 * 111.00047 * 190.00120 * 15 14 13 18 18 C 1.50697 * 109.47030 * 169.99956 * 17 15 14 19 19 O 1.21291 * 120.00103 * 0.02562 * 18 17 15 20 20 N 1.34778 * 119.99894 * 180.02562 * 18 17 15 21 21 C 1.37099 * 119.99943 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99899 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99881 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99715 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99775 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47265 * 89.99874 * 25 23 21 27 27 H 1.48502 * 109.47049 * 209.99897 * 25 23 21 28 28 H 1.48498 * 109.47364 * 329.99579 * 25 23 21 29 29 C 1.54100 * 107.29336 * 26.51523 * 6 5 4 30 30 H 1.08992 * 109.47106 * 297.80891 * 1 2 3 31 31 H 1.08996 * 109.46608 * 57.81341 * 1 2 3 32 32 H 1.08997 * 109.46369 * 177.80895 * 1 2 3 33 33 H 1.09005 * 110.62005 * 36.72666 * 4 2 1 34 34 H 1.08996 * 110.62001 * 273.72558 * 4 2 1 35 35 H 1.08995 * 109.47693 * 90.00207 * 11 10 8 36 36 H 1.09003 * 109.47006 * 210.00121 * 11 10 8 37 37 H 1.09004 * 109.47665 * 329.99813 * 11 10 8 38 38 H 1.09002 * 109.47192 * 209.99937 * 12 10 8 39 39 H 1.08996 * 109.47342 * 329.99648 * 12 10 8 40 40 H 1.09002 * 109.46747 * 300.00171 * 13 12 10 41 41 H 1.08996 * 109.47074 * 59.99445 * 13 12 10 42 42 H 1.08993 * 109.47409 * 300.00238 * 14 13 12 43 43 H 1.09008 * 109.47165 * 60.00188 * 14 13 12 44 44 H 1.09001 * 109.46835 * 60.00189 * 16 15 14 45 45 H 1.08999 * 109.47230 * 179.97438 * 16 15 14 46 46 H 1.08998 * 109.46531 * 299.99974 * 16 15 14 47 47 H 1.08995 * 109.46879 * 290.00032 * 17 15 14 48 48 H 1.09000 * 109.46809 * 50.00258 * 17 15 14 49 49 H 0.96999 * 119.99670 * 359.97438 * 20 18 17 50 50 H 0.97003 * 119.99101 * 179.97438 * 24 23 21 51 51 H 1.08993 * 110.49032 * 116.64829 * 29 6 5 52 52 H 1.09005 * 110.48703 * 239.29934 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0831 -0.8021 1.2054 5 8 3.3942 -1.2142 0.7627 6 6 3.2720 -1.5881 -0.6199 7 1 3.0854 -2.6591 -0.6990 8 6 4.5351 -1.2321 -1.3606 9 8 5.4314 -0.6507 -0.7865 10 7 4.6688 -1.5598 -2.6611 11 6 3.5859 -2.2615 -3.3547 12 6 5.8943 -1.2084 -3.3828 13 6 6.9060 -2.3490 -3.2557 14 6 8.1856 -1.9823 -4.0099 15 7 9.1572 -3.0773 -3.8873 16 6 8.6798 -4.2842 -4.5754 17 6 10.4755 -2.6703 -4.3918 18 6 11.4971 -3.7173 -4.0296 19 8 11.1600 -4.7055 -3.4124 20 7 12.7852 -3.5556 -4.3916 21 6 13.7145 -4.5084 -4.0625 22 1 13.4143 -5.3887 -3.5136 23 6 15.0425 -4.3419 -4.4362 24 7 15.4074 -3.2714 -5.1054 25 14 16.3084 -5.6403 -3.9884 26 1 16.3882 -6.6494 -5.0750 27 1 17.6354 -4.9976 -3.8114 28 1 15.9083 -6.3063 -2.7229 29 6 2.0826 -0.8013 -1.2039 30 1 -0.3633 0.4794 0.9089 31 1 -0.3632 0.5474 -0.8697 32 1 -0.3632 -1.0269 -0.0393 33 1 1.4563 -1.6703 1.4089 34 1 2.1582 -0.1663 2.0876 35 1 2.9055 -1.5336 -3.7964 36 1 4.0051 -2.8904 -4.1402 37 1 3.0415 -2.8830 -2.6436 38 1 5.6620 -1.0444 -4.4350 39 1 6.3177 -0.2982 -2.9581 40 1 7.1383 -2.5130 -2.2034 41 1 6.4826 -3.2592 -3.6803 42 1 7.9530 -1.8185 -5.0620 43 1 8.6093 -1.0719 -3.5855 44 1 8.5318 -4.0649 -5.6328 45 1 9.4181 -5.0790 -4.4694 46 1 7.7354 -4.6038 -4.1349 47 1 10.4327 -2.5641 -5.4757 48 1 10.7575 -1.7174 -3.9441 49 1 13.0546 -2.7655 -4.8855 50 1 16.3346 -3.1551 -5.3659 51 1 2.4210 -0.1254 -1.9891 52 1 1.3247 -1.4844 -1.5875 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570202511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:23 Heat of formation + Delta-G solvation = -134.690019 kcal Electronic energy + Delta-G solvation = -29715.652964 eV Core-core repulsion = 25521.424197 eV Total energy + Delta-G solvation = -4194.228767 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.61923 -40.40568 -39.70816 -38.21293 -36.80938 -35.88846 -34.55423 -33.50985 -33.24468 -31.12149 -29.39341 -28.08981 -27.42573 -27.13854 -26.56313 -24.90814 -23.49050 -21.85778 -21.59004 -21.00614 -20.42839 -19.85298 -18.38242 -17.91783 -17.60103 -17.16196 -16.76572 -16.63349 -16.46244 -16.38638 -16.06814 -15.77521 -15.51567 -15.25161 -15.01633 -14.81550 -14.66184 -14.42996 -14.02553 -13.78389 -13.74721 -13.49114 -13.37640 -13.08140 -13.06481 -12.91642 -12.85767 -12.72028 -12.65657 -12.50557 -12.39987 -12.34989 -12.25420 -12.12450 -11.77250 -11.69672 -11.54215 -11.45991 -11.10254 -10.49291 -10.29168 -10.00362 -9.72003 -9.17323 -8.46743 -5.95493 1.37368 1.40795 1.48988 1.53968 1.80920 2.05025 2.28490 2.77623 2.95291 3.19888 3.32183 3.42686 3.57225 3.76538 3.83930 3.93918 4.07847 4.15426 4.17400 4.29126 4.32539 4.37356 4.39689 4.46016 4.52203 4.52735 4.58057 4.61161 4.63733 4.69498 4.70894 4.74415 4.78209 4.81670 4.89095 4.95697 5.09313 5.09974 5.15234 5.22825 5.28293 5.37131 5.40764 5.52109 5.78729 5.89253 6.08609 6.25143 6.32678 6.60933 7.11664 7.12875 7.56159 8.12562 8.70735 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.028368 B = 0.001599 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.796870 B =17508.773289 C =17874.849721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 H 0.072 0.928 4 C 0.040 3.960 5 O -0.392 6.392 6 C 0.059 3.941 7 H 0.115 0.885 8 C 0.500 3.500 9 O -0.579 6.579 10 N -0.609 5.609 11 C 0.064 3.936 12 C 0.121 3.879 13 C -0.118 4.118 14 C 0.062 3.938 15 N -0.547 5.547 16 C 0.029 3.971 17 C 0.059 3.941 18 C 0.440 3.560 19 O -0.616 6.616 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.269 1.269 27 H -0.270 1.270 28 H -0.275 1.275 29 C -0.131 4.131 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.035 0.965 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.035 0.965 45 H 0.051 0.949 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.104 0.896 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.080 0.920 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.217 7.791 0.295 36.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 H 0.090 0.910 4 C -0.036 4.036 5 O -0.311 6.311 6 C -0.001 4.001 7 H 0.132 0.868 8 C 0.288 3.712 9 O -0.457 6.457 10 N -0.343 5.343 11 C -0.077 4.077 12 C -0.002 4.002 13 C -0.157 4.157 14 C -0.066 4.066 15 N -0.272 5.272 16 C -0.119 4.119 17 C -0.072 4.072 18 C 0.227 3.773 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.194 1.194 27 H -0.195 1.195 28 H -0.200 1.200 29 C -0.169 4.169 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.132 0.868 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.070 0.930 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.122 0.878 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.098 0.902 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -34.562 7.384 1.544 35.376 hybrid contribution 1.298 0.017 -0.675 1.464 sum -33.264 7.401 0.869 34.089 Atomic orbital electron populations 1.21694 0.91344 1.03293 1.02947 1.22735 0.98349 0.99436 0.93872 0.90997 1.23971 0.82742 0.98801 0.98065 1.89003 1.31720 1.86623 1.23716 1.22837 0.92846 1.01474 0.82979 0.86784 1.21213 0.88992 0.78458 0.82501 1.90715 1.43828 1.43090 1.68107 1.47902 1.18755 1.58043 1.09581 1.22261 0.89264 0.97597 0.98557 1.21428 0.83927 0.96949 0.97898 1.21788 0.94550 0.99459 0.99872 1.22076 0.91702 0.93166 0.99637 1.61457 1.01438 1.05997 1.58319 1.22413 1.00949 0.92872 0.95639 1.21722 0.88827 0.97125 0.99563 1.20816 0.83676 0.89163 0.83628 1.90457 1.80369 1.33750 1.45615 1.41933 1.06588 1.21942 1.50720 1.19664 0.89104 1.02407 1.35201 0.90432 1.26039 0.99244 0.99680 0.96274 1.69679 1.19481 1.28162 1.38812 0.84918 0.77064 0.77676 0.78604 1.19433 1.19487 1.20000 1.23084 0.95649 0.99592 0.98579 0.91805 0.91309 0.90907 0.89706 0.88658 0.89822 0.89327 0.89551 0.86765 0.91878 0.94637 0.90574 0.92180 0.90907 0.94634 0.92983 0.90411 0.91028 0.87783 0.77022 0.91303 0.90158 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.55 9.19 71.99 0.66 0.12 16 2 C -0.13 -1.21 3.72 -9.49 -0.04 -1.24 16 3 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 4 C 0.04 0.54 7.17 72.66 0.52 1.06 16 5 O -0.39 -9.29 10.74 -130.27 -1.40 -10.69 16 6 C 0.06 1.00 2.97 30.22 0.09 1.09 16 7 H 0.11 1.38 7.17 -2.39 -0.02 1.36 16 8 C 0.50 12.07 6.86 87.65 0.60 12.67 16 9 O -0.58 -20.98 16.11 15.67 0.25 -20.73 16 10 N -0.61 -10.21 2.87 -846.78 -2.43 -12.65 16 11 C 0.06 0.40 9.23 127.77 1.18 1.58 16 12 C 0.12 2.21 5.41 86.38 0.47 2.68 16 13 C -0.12 -2.75 5.46 30.59 0.17 -2.59 16 14 C 0.06 1.56 4.96 86.30 0.43 1.99 16 15 N -0.55 -18.97 4.50 -927.06 -4.17 -23.15 16 16 C 0.03 0.95 8.96 127.69 1.14 2.09 16 17 C 0.06 2.17 5.45 85.56 0.47 2.63 16 18 C 0.44 22.00 7.47 87.66 0.66 22.66 16 19 O -0.62 -35.58 13.91 -3.06 -0.04 -35.62 16 20 N -0.57 -30.63 5.29 -306.98 -1.62 -32.25 16 21 C -0.33 -19.59 9.68 84.04 0.81 -18.77 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -50.73 13.05 21.66 0.28 -50.45 16 25 Si 0.99 44.05 29.55 68.60 2.03 46.08 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 29 C -0.13 -1.13 4.85 31.58 0.15 -0.97 16 30 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.07 0.13 8.10 -2.39 -0.02 0.12 16 33 H 0.08 0.76 8.05 -2.38 -0.02 0.74 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 35 H 0.08 0.17 7.89 -2.39 -0.02 0.15 16 36 H 0.09 0.40 8.07 -2.39 -0.02 0.38 16 37 H 0.09 0.30 6.19 -2.38 -0.01 0.28 16 38 H 0.11 1.26 8.07 -2.39 -0.02 1.24 16 39 H 0.06 1.46 7.42 -2.39 -0.02 1.45 16 40 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 1.58 6.55 -2.39 -0.02 1.56 16 42 H 0.06 1.19 8.12 -2.39 -0.02 1.17 16 43 H 0.07 1.86 7.93 -2.38 -0.02 1.84 16 44 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.05 2.17 5.82 -2.39 -0.01 2.15 16 46 H 0.08 2.20 6.47 -2.39 -0.02 2.18 16 47 H 0.07 2.29 8.12 -2.39 -0.02 2.27 16 48 H 0.10 3.50 7.93 -2.39 -0.02 3.48 16 49 H 0.40 20.00 7.90 -92.71 -0.73 19.26 16 50 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 51 H 0.08 0.74 7.38 -2.39 -0.02 0.72 16 52 H 0.12 0.19 7.83 -2.38 -0.02 0.18 16 Total: -1.00 -85.12 413.59 0.85 -84.27 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.18 Total: 30.42 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 7.78 Total: 24.76 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -7.95 Total: -118.49 kcal Atomic # 8 Polarization: -65.86 SS G_CDS: -1.19 Total: -67.05 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -85.12 0.85 -84.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570202511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.422 kcal (2) G-P(sol) polarization free energy of solvation -85.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds