Wall clock time and date at job start Wed Apr 1 2020 00:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.80724 * 2 1 4 4 C 1.54997 * 110.91161 * 236.36688 * 2 1 3 5 5 O 1.44379 * 103.49361 * 204.77735 * 4 2 1 6 6 C 1.43745 * 106.97030 * 40.06121 * 5 4 2 7 7 H 1.09004 * 109.87769 * 93.06554 * 6 5 4 8 8 C 1.50709 * 109.87496 * 214.05774 * 6 5 4 9 9 O 1.21276 * 120.00001 * 3.55338 * 8 6 5 10 10 N 1.34778 * 119.99783 * 183.54636 * 8 6 5 11 11 C 1.46501 * 120.00027 * 0.02562 * 10 8 6 12 12 C 1.46498 * 119.99684 * 180.02562 * 10 8 6 13 13 C 1.52998 * 109.47038 * 90.00130 * 12 10 8 14 14 C 1.53005 * 109.46934 * 179.97438 * 13 12 10 15 15 N 1.46904 * 109.46825 * 179.97438 * 14 13 12 16 16 C 1.46895 * 111.00624 * 293.95740 * 15 14 13 17 17 C 1.46903 * 110.99836 * 170.00130 * 15 14 13 18 18 C 1.50698 * 109.47069 * 190.00876 * 17 15 14 19 19 O 1.21293 * 120.00319 * 359.97438 * 18 17 15 20 20 N 1.34777 * 119.99671 * 180.02562 * 18 17 15 21 21 C 1.37100 * 119.99968 * 179.97438 * 20 18 17 22 22 H 1.08009 * 119.99843 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00365 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99970 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00363 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46969 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47099 * 119.99641 * 25 23 21 28 28 H 1.48502 * 109.47135 * 240.00003 * 25 23 21 29 29 C 1.54097 * 107.29791 * 333.48464 * 6 5 4 30 30 H 1.09002 * 109.47153 * 182.17689 * 1 2 3 31 31 H 1.09001 * 109.46832 * 62.17879 * 1 2 3 32 32 H 1.09004 * 109.47261 * 302.17861 * 1 2 3 33 33 H 1.09004 * 110.61336 * 323.28385 * 4 2 1 34 34 H 1.09006 * 110.61410 * 86.27420 * 4 2 1 35 35 H 1.09002 * 109.46658 * 90.00250 * 11 10 8 36 36 H 1.09002 * 109.46982 * 209.99447 * 11 10 8 37 37 H 1.09002 * 109.47362 * 330.00267 * 11 10 8 38 38 H 1.08999 * 109.46929 * 210.00276 * 12 10 8 39 39 H 1.09002 * 109.47252 * 330.00316 * 12 10 8 40 40 H 1.08999 * 109.47380 * 299.99871 * 13 12 10 41 41 H 1.09002 * 109.46947 * 59.99999 * 13 12 10 42 42 H 1.08999 * 109.47318 * 300.00320 * 14 13 12 43 43 H 1.09002 * 109.46968 * 60.00424 * 14 13 12 44 44 H 1.09006 * 109.46727 * 59.99733 * 16 15 14 45 45 H 1.09002 * 109.47183 * 179.97438 * 16 15 14 46 46 H 1.08992 * 109.46936 * 300.00251 * 16 15 14 47 47 H 1.09003 * 109.47318 * 310.00373 * 17 15 14 48 48 H 1.08997 * 109.46939 * 70.00442 * 17 15 14 49 49 H 0.97002 * 120.00350 * 359.97438 * 20 18 17 50 50 H 0.97000 * 120.00364 * 179.97438 * 24 23 21 51 51 H 1.09000 * 110.48704 * 243.35525 * 29 6 5 52 52 H 1.09003 * 110.48716 * 120.71037 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0190 0.0000 4 6 2.0832 -0.8019 -1.2055 5 8 3.3942 -1.2141 -0.7628 6 6 3.2718 -1.5883 0.6197 7 1 3.0852 -2.6594 0.6986 8 6 4.5350 -1.2326 1.3606 9 8 5.4313 -0.6511 0.7867 10 7 4.6686 -1.5605 2.6610 11 6 3.5860 -2.2633 3.3541 12 6 5.8963 -1.2141 3.3813 13 6 5.7444 0.1721 4.0108 14 6 7.0265 0.5335 4.7636 15 7 6.8809 1.8648 5.3675 16 6 6.7779 2.9034 4.3339 17 6 7.9882 2.1483 6.2902 18 6 7.6839 3.4013 7.0702 19 8 6.6468 3.9996 6.8762 20 7 8.5647 3.8576 7.9826 21 6 8.2882 4.9978 8.6918 22 1 7.3646 5.5306 8.5191 23 6 9.1959 5.4681 9.6329 24 7 10.3193 4.8196 9.8434 25 14 8.8194 7.0220 10.5987 26 1 7.5002 7.5589 10.1781 27 1 8.7853 6.7071 12.0495 28 1 9.8731 8.0352 10.3367 29 6 2.0824 -0.8016 1.2037 30 1 -0.3633 -1.0269 0.0390 31 1 -0.3633 0.4796 -0.9089 32 1 -0.3634 0.5473 0.8698 33 1 1.4562 -1.6700 -1.4092 34 1 2.1583 -0.1659 -2.0876 35 1 3.7303 -3.3393 3.2562 36 1 3.5928 -1.9904 4.4094 37 1 2.6297 -1.9833 2.9125 38 1 6.0784 -1.9506 4.1639 39 1 6.7359 -1.2075 2.6862 40 1 5.5623 0.9086 3.2282 41 1 4.9049 0.1654 4.7059 42 1 7.2082 -0.2030 5.5463 43 1 7.8663 0.5401 4.0688 44 1 5.9081 2.7070 3.7068 45 1 6.6705 3.8789 4.8084 46 1 7.6781 2.8950 3.7194 47 1 8.1104 1.3123 6.9790 48 1 8.9078 2.2882 5.7220 49 1 9.3943 3.3793 8.1375 50 1 10.9532 5.1480 10.5001 51 1 2.4209 -0.1258 1.9891 52 1 1.3246 -1.4848 1.5873 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570202512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:42 Heat of formation + Delta-G solvation = -106.570860 kcal Electronic energy + Delta-G solvation = -29969.754092 eV Core-core repulsion = 25776.744663 eV Total energy + Delta-G solvation = -4193.009429 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.92920 -39.05118 -38.55762 -36.82442 -35.85381 -34.02667 -33.86146 -32.52497 -31.20991 -30.42955 -27.89308 -27.36371 -26.85689 -26.26273 -24.89002 -23.79578 -22.58702 -21.16744 -20.72948 -19.69366 -19.08695 -17.80250 -17.65971 -16.96689 -16.46896 -16.13804 -15.72694 -15.54724 -15.36458 -15.15915 -14.62242 -14.58452 -14.40991 -14.24175 -13.85175 -13.66746 -13.40969 -13.37644 -13.25443 -13.22436 -12.81731 -12.64684 -12.21661 -12.06083 -11.99217 -11.96018 -11.76436 -11.56031 -11.43517 -11.27388 -11.21508 -11.21043 -11.13013 -10.88955 -10.52825 -10.43821 -10.32408 -10.19948 -9.71592 -9.45883 -8.97076 -8.39733 -7.94351 -7.78977 -6.39120 -3.79700 2.31711 2.47620 3.17922 3.28171 3.35525 3.50091 3.87823 3.94433 4.03444 4.11542 4.25429 4.29099 4.35295 4.63286 4.69990 4.78453 4.86033 4.94698 4.96134 5.04607 5.10513 5.14429 5.18019 5.20388 5.24999 5.26276 5.28502 5.31527 5.35693 5.49326 5.57344 5.58870 5.67654 5.72325 5.78166 5.82249 5.99324 6.04738 6.06494 6.17857 6.26189 6.33364 6.37931 6.65081 7.03887 7.35174 7.46812 7.57968 7.91176 8.09893 8.65294 9.21243 9.58001 10.10191 10.78812 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020844 B = 0.001749 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.011894 B =16006.678915 C =16643.002043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 H 0.090 0.910 4 C 0.048 3.952 5 O -0.348 6.348 6 C 0.063 3.937 7 H 0.093 0.907 8 C 0.512 3.488 9 O -0.515 6.515 10 N -0.614 5.614 11 C 0.066 3.934 12 C 0.117 3.883 13 C -0.129 4.129 14 C 0.058 3.942 15 N -0.519 5.519 16 C 0.022 3.978 17 C 0.045 3.955 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.566 5.566 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C -0.144 4.144 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.014 0.986 47 H 0.087 0.913 48 H 0.047 0.953 49 H 0.392 0.608 50 H 0.270 0.730 51 H 0.086 0.914 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.410 -18.480 -17.340 30.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 H 0.108 0.892 4 C -0.028 4.028 5 O -0.265 6.265 6 C 0.001 3.999 7 H 0.110 0.890 8 C 0.298 3.702 9 O -0.389 6.389 10 N -0.349 5.349 11 C -0.077 4.077 12 C -0.005 4.005 13 C -0.168 4.168 14 C -0.071 4.071 15 N -0.243 5.243 16 C -0.126 4.126 17 C -0.086 4.086 18 C 0.231 3.769 19 O -0.461 6.461 20 N -0.203 5.203 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.182 4.182 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.032 0.968 47 H 0.105 0.895 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.104 0.896 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.708 -17.716 -17.514 29.996 hybrid contribution 1.003 0.346 0.444 1.150 sum -15.705 -17.370 -17.070 28.979 Atomic orbital electron populations 1.21727 0.93384 1.02235 1.02601 1.22769 0.96871 1.00688 0.94266 0.89173 1.23741 0.83834 0.97733 0.97541 1.89018 1.29194 1.86172 1.22141 1.22616 0.93388 0.99860 0.84012 0.88959 1.20487 0.88703 0.79283 0.81721 1.90737 1.41508 1.39683 1.66976 1.47771 1.18554 1.58652 1.09957 1.22051 0.90175 0.96717 0.98779 1.21492 0.86456 0.96548 0.96038 1.21917 0.98862 0.96206 0.99844 1.22032 0.96117 0.91646 0.97321 1.61565 1.43362 1.01351 1.17973 1.22550 0.99007 0.97651 0.93384 1.21865 0.92211 0.98648 0.95867 1.19761 0.85846 0.87305 0.84027 1.90480 1.26538 1.60247 1.68879 1.41881 1.19191 1.24809 1.34398 1.19748 1.05413 1.01520 1.15981 0.87888 1.25258 0.95282 0.99547 0.97969 1.69621 1.09285 1.40198 1.35301 0.85805 0.78591 0.80958 0.79012 1.19243 1.20785 1.20806 1.23091 0.96447 0.99487 0.99206 0.92262 0.91997 0.91883 0.91730 0.88468 0.92352 0.90257 0.90569 0.90186 0.89839 0.91357 0.90875 0.90881 0.95014 0.92182 0.88740 0.96784 0.89451 0.93507 0.77505 0.91975 0.89580 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.60 9.19 37.16 0.34 -0.26 16 2 C -0.13 -0.80 3.72 -88.61 -0.33 -1.13 16 3 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 4 C 0.05 0.34 7.17 38.21 0.27 0.61 16 5 O -0.35 -3.88 10.74 -54.80 -0.59 -4.47 16 6 C 0.06 0.55 3.04 -27.31 -0.08 0.46 16 7 H 0.09 0.59 7.99 -51.93 -0.42 0.18 16 8 C 0.51 6.01 6.86 -10.98 -0.08 5.93 16 9 O -0.52 -8.50 16.11 -14.00 -0.23 -8.72 16 10 N -0.61 -5.64 2.87 -181.57 -0.52 -6.16 16 11 C 0.07 0.35 10.02 59.85 0.60 0.95 16 12 C 0.12 1.16 5.41 -4.04 -0.02 1.14 16 13 C -0.13 -1.54 5.46 -26.73 -0.15 -1.69 16 14 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 15 N -0.52 -9.06 4.50 -244.37 -1.10 -10.16 16 16 C 0.02 0.39 8.96 60.06 0.54 0.93 16 17 C 0.05 0.84 5.45 -4.98 -0.03 0.82 16 18 C 0.45 10.73 7.48 -10.99 -0.08 10.65 16 19 O -0.58 -15.82 13.91 5.55 0.08 -15.74 16 20 N -0.57 -14.57 5.29 -10.96 -0.06 -14.63 16 21 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 22 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.80 13.05 55.50 0.72 -24.07 16 25 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 C -0.14 -0.90 4.29 -25.20 -0.11 -1.01 16 30 H 0.06 0.20 8.10 -51.93 -0.42 -0.22 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.33 8.05 -51.93 -0.42 -0.08 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 37 H 0.08 0.30 4.44 -51.93 -0.23 0.07 16 38 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 39 H 0.08 0.96 7.42 -51.93 -0.39 0.57 16 40 H 0.07 0.96 6.55 -51.93 -0.34 0.62 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 43 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 44 H 0.06 0.98 6.47 -51.93 -0.34 0.64 16 45 H 0.09 1.99 5.82 -51.93 -0.30 1.68 16 46 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.09 1.44 7.93 -51.93 -0.41 1.03 16 48 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 49 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 51 H 0.09 0.63 7.44 -51.93 -0.39 0.24 16 52 H 0.09 0.33 7.23 -51.93 -0.38 -0.05 16 LS Contribution 412.66 15.07 6.22 6.22 Total: -1.00 -35.76 412.66 -8.78 -44.54 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -8.91 Total: 6.88 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 0.62 Total: 10.09 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.95 Total: -55.02 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.74 Total: -28.94 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.76 -8.78 -44.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570202512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.031 kcal (2) G-P(sol) polarization free energy of solvation -35.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds