Wall clock time and date at job start Wed Apr 1 2020 00:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.80724 * 2 1 4 4 C 1.54997 * 110.91161 * 236.36688 * 2 1 3 5 5 O 1.44379 * 103.49361 * 204.77735 * 4 2 1 6 6 C 1.43745 * 106.97030 * 40.06121 * 5 4 2 7 7 H 1.09004 * 109.87769 * 93.06554 * 6 5 4 8 8 C 1.50709 * 109.87496 * 214.05774 * 6 5 4 9 9 O 1.21276 * 120.00001 * 3.55338 * 8 6 5 10 10 N 1.34778 * 119.99783 * 183.54636 * 8 6 5 11 11 C 1.46501 * 120.00027 * 0.02562 * 10 8 6 12 12 C 1.46498 * 119.99684 * 180.02562 * 10 8 6 13 13 C 1.52998 * 109.47038 * 90.00130 * 12 10 8 14 14 C 1.53005 * 109.46934 * 179.97438 * 13 12 10 15 15 N 1.46904 * 109.46825 * 179.97438 * 14 13 12 16 16 C 1.46895 * 111.00624 * 293.95740 * 15 14 13 17 17 C 1.46903 * 110.99836 * 170.00130 * 15 14 13 18 18 C 1.50698 * 109.47069 * 190.00876 * 17 15 14 19 19 O 1.21293 * 120.00319 * 359.97438 * 18 17 15 20 20 N 1.34777 * 119.99671 * 180.02562 * 18 17 15 21 21 C 1.37100 * 119.99968 * 179.97438 * 20 18 17 22 22 H 1.08009 * 119.99843 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00365 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99970 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00363 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46969 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47099 * 119.99641 * 25 23 21 28 28 H 1.48502 * 109.47135 * 240.00003 * 25 23 21 29 29 C 1.54097 * 107.29791 * 333.48464 * 6 5 4 30 30 H 1.09002 * 109.47153 * 182.17689 * 1 2 3 31 31 H 1.09001 * 109.46832 * 62.17879 * 1 2 3 32 32 H 1.09004 * 109.47261 * 302.17861 * 1 2 3 33 33 H 1.09004 * 110.61336 * 323.28385 * 4 2 1 34 34 H 1.09006 * 110.61410 * 86.27420 * 4 2 1 35 35 H 1.09002 * 109.46658 * 90.00250 * 11 10 8 36 36 H 1.09002 * 109.46982 * 209.99447 * 11 10 8 37 37 H 1.09002 * 109.47362 * 330.00267 * 11 10 8 38 38 H 1.08999 * 109.46929 * 210.00276 * 12 10 8 39 39 H 1.09002 * 109.47252 * 330.00316 * 12 10 8 40 40 H 1.08999 * 109.47380 * 299.99871 * 13 12 10 41 41 H 1.09002 * 109.46947 * 59.99999 * 13 12 10 42 42 H 1.08999 * 109.47318 * 300.00320 * 14 13 12 43 43 H 1.09002 * 109.46968 * 60.00424 * 14 13 12 44 44 H 1.09006 * 109.46727 * 59.99733 * 16 15 14 45 45 H 1.09002 * 109.47183 * 179.97438 * 16 15 14 46 46 H 1.08992 * 109.46936 * 300.00251 * 16 15 14 47 47 H 1.09003 * 109.47318 * 310.00373 * 17 15 14 48 48 H 1.08997 * 109.46939 * 70.00442 * 17 15 14 49 49 H 0.97002 * 120.00350 * 359.97438 * 20 18 17 50 50 H 0.97000 * 120.00364 * 179.97438 * 24 23 21 51 51 H 1.09000 * 110.48704 * 243.35525 * 29 6 5 52 52 H 1.09003 * 110.48716 * 120.71037 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0190 0.0000 4 6 2.0832 -0.8019 -1.2055 5 8 3.3942 -1.2141 -0.7628 6 6 3.2718 -1.5883 0.6197 7 1 3.0852 -2.6594 0.6986 8 6 4.5350 -1.2326 1.3606 9 8 5.4313 -0.6511 0.7867 10 7 4.6686 -1.5605 2.6610 11 6 3.5860 -2.2633 3.3541 12 6 5.8963 -1.2141 3.3813 13 6 5.7444 0.1721 4.0108 14 6 7.0265 0.5335 4.7636 15 7 6.8809 1.8648 5.3675 16 6 6.7779 2.9034 4.3339 17 6 7.9882 2.1483 6.2902 18 6 7.6839 3.4013 7.0702 19 8 6.6468 3.9996 6.8762 20 7 8.5647 3.8576 7.9826 21 6 8.2882 4.9978 8.6918 22 1 7.3646 5.5306 8.5191 23 6 9.1959 5.4681 9.6329 24 7 10.3193 4.8196 9.8434 25 14 8.8194 7.0220 10.5987 26 1 7.5002 7.5589 10.1781 27 1 8.7853 6.7071 12.0495 28 1 9.8731 8.0352 10.3367 29 6 2.0824 -0.8016 1.2037 30 1 -0.3633 -1.0269 0.0390 31 1 -0.3633 0.4796 -0.9089 32 1 -0.3634 0.5473 0.8698 33 1 1.4562 -1.6700 -1.4092 34 1 2.1583 -0.1659 -2.0876 35 1 3.7303 -3.3393 3.2562 36 1 3.5928 -1.9904 4.4094 37 1 2.6297 -1.9833 2.9125 38 1 6.0784 -1.9506 4.1639 39 1 6.7359 -1.2075 2.6862 40 1 5.5623 0.9086 3.2282 41 1 4.9049 0.1654 4.7059 42 1 7.2082 -0.2030 5.5463 43 1 7.8663 0.5401 4.0688 44 1 5.9081 2.7070 3.7068 45 1 6.6705 3.8789 4.8084 46 1 7.6781 2.8950 3.7194 47 1 8.1104 1.3123 6.9790 48 1 8.9078 2.2882 5.7220 49 1 9.3943 3.3793 8.1375 50 1 10.9532 5.1480 10.5001 51 1 2.4209 -0.1258 1.9891 52 1 1.3246 -1.4848 1.5873 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570202512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:37 Heat of formation + Delta-G solvation = -132.485484 kcal Electronic energy + Delta-G solvation = -29970.877835 eV Core-core repulsion = 25776.744663 eV Total energy + Delta-G solvation = -4194.133171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.65052 -40.40850 -39.71057 -38.21913 -36.82950 -35.88545 -34.57483 -33.52019 -33.24400 -31.16833 -29.40396 -28.13027 -27.47947 -27.12855 -26.57196 -24.83991 -23.54727 -21.89720 -21.65426 -21.00506 -20.41636 -19.84738 -18.35557 -17.93197 -17.61022 -17.13167 -16.70852 -16.62699 -16.60414 -16.29086 -16.13039 -15.78106 -15.53593 -15.21582 -15.07657 -14.88365 -14.73888 -14.39304 -14.04108 -13.81717 -13.75618 -13.50012 -13.38476 -13.16436 -13.05206 -13.01205 -12.87571 -12.70649 -12.59906 -12.52974 -12.39714 -12.30343 -12.26302 -12.11319 -11.79884 -11.67431 -11.55688 -11.46637 -11.10832 -10.51198 -10.29410 -9.99970 -9.72135 -9.24569 -8.46473 -5.95042 1.36287 1.41291 1.48295 1.55639 1.78342 2.05344 2.28504 2.76416 2.93717 3.20145 3.31196 3.41263 3.52843 3.77065 3.82507 3.94087 4.07830 4.13873 4.17891 4.21164 4.33011 4.36660 4.38919 4.43228 4.50978 4.51743 4.57058 4.58138 4.61834 4.67670 4.71469 4.73707 4.75861 4.81065 4.86922 4.96107 5.01669 5.07626 5.12450 5.21157 5.25734 5.34487 5.41432 5.50504 5.76154 5.87835 6.04831 6.19145 6.32051 6.61175 7.09863 7.13396 7.56748 8.12881 8.71193 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020844 B = 0.001749 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.011894 B =16006.678915 C =16643.002043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 H 0.066 0.934 4 C 0.044 3.956 5 O -0.388 6.388 6 C 0.063 3.937 7 H 0.123 0.877 8 C 0.501 3.499 9 O -0.578 6.578 10 N -0.609 5.609 11 C 0.058 3.942 12 C 0.120 3.880 13 C -0.117 4.117 14 C 0.060 3.940 15 N -0.535 5.535 16 C 0.030 3.970 17 C 0.057 3.943 18 C 0.441 3.559 19 O -0.615 6.615 20 N -0.575 5.575 21 C -0.331 4.331 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.272 1.272 29 C -0.138 4.138 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.035 0.965 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.022 0.978 47 H 0.116 0.884 48 H 0.064 0.936 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.072 0.928 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.684 -20.710 -16.559 31.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.147 4.147 3 H 0.084 0.916 4 C -0.032 4.032 5 O -0.307 6.307 6 C 0.002 3.998 7 H 0.140 0.860 8 C 0.289 3.711 9 O -0.457 6.457 10 N -0.342 5.342 11 C -0.083 4.083 12 C -0.003 4.003 13 C -0.156 4.156 14 C -0.068 4.068 15 N -0.259 5.259 16 C -0.118 4.118 17 C -0.074 4.074 18 C 0.229 3.771 19 O -0.501 6.501 20 N -0.212 5.212 21 C -0.461 4.461 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.175 4.175 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.093 0.907 42 H 0.117 0.883 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.040 0.960 47 H 0.134 0.866 48 H 0.082 0.918 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.090 0.910 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.997 -19.995 -16.709 31.669 hybrid contribution 1.375 1.004 0.170 1.711 sum -16.622 -18.991 -16.539 30.174 Atomic orbital electron populations 1.21697 0.91387 1.03429 1.02820 1.22746 0.98395 0.99343 0.94190 0.91576 1.23945 0.82773 0.98808 0.97678 1.88977 1.31618 1.86603 1.23509 1.22814 0.92416 1.01667 0.82927 0.86008 1.21222 0.89091 0.78341 0.82448 1.90697 1.43749 1.42724 1.68528 1.47892 1.19168 1.57780 1.09382 1.22362 0.89467 0.97581 0.98937 1.21435 0.86431 0.96130 0.96274 1.21785 0.98303 0.96746 0.98791 1.22136 0.96858 0.89724 0.98107 1.61539 1.43240 1.02940 1.18200 1.22364 0.99861 0.96205 0.93344 1.21765 0.93102 0.96420 0.96142 1.20777 0.84738 0.88371 0.83252 1.90459 1.28102 1.61807 1.69765 1.41941 1.19747 1.24594 1.34935 1.19689 1.05368 1.03105 1.17933 0.90384 1.26041 0.94854 1.02273 0.98210 1.69678 1.09660 1.41262 1.35575 0.84867 0.78196 0.77320 0.77914 1.19858 1.19481 1.19689 1.23125 0.96230 0.99627 0.98566 0.90484 0.91686 0.91855 0.89212 0.88622 0.90147 0.89339 0.89026 0.86920 0.91837 0.94229 0.90682 0.88322 0.94662 0.91321 0.92446 0.95969 0.86599 0.91849 0.77006 0.91325 0.90971 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.19 71.98 0.66 -0.20 16 2 C -0.13 -1.51 3.72 -9.49 -0.04 -1.54 16 3 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 4 C 0.04 0.58 7.17 72.67 0.52 1.10 16 5 O -0.39 -8.72 10.74 -130.27 -1.40 -10.12 16 6 C 0.06 1.02 3.04 30.22 0.09 1.11 16 7 H 0.12 1.21 7.99 -2.38 -0.02 1.19 16 8 C 0.50 11.76 6.86 87.66 0.60 12.36 16 9 O -0.58 -20.13 16.11 15.69 0.25 -19.88 16 10 N -0.61 -10.32 2.87 -846.75 -2.43 -12.75 16 11 C 0.06 0.42 10.02 127.77 1.28 1.70 16 12 C 0.12 2.21 5.41 86.38 0.47 2.68 16 13 C -0.12 -2.69 5.46 30.60 0.17 -2.53 16 14 C 0.06 1.48 4.96 86.30 0.43 1.91 16 15 N -0.53 -18.30 4.50 -927.04 -4.17 -22.47 16 16 C 0.03 1.10 8.96 127.69 1.14 2.25 16 17 C 0.06 2.04 5.45 85.56 0.47 2.51 16 18 C 0.44 21.58 7.48 87.66 0.66 22.24 16 19 O -0.62 -34.82 13.91 -3.07 -0.04 -34.87 16 20 N -0.57 -30.07 5.29 -306.98 -1.62 -31.69 16 21 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.92 -50.18 13.05 21.66 0.28 -49.89 16 25 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 29 C -0.14 -1.47 4.29 31.58 0.14 -1.34 16 30 H 0.08 0.24 8.10 -2.39 -0.02 0.22 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.09 0.72 8.05 -2.38 -0.02 0.70 16 34 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.09 0.54 8.07 -2.39 -0.02 0.52 16 37 H 0.09 0.39 4.44 -2.39 -0.01 0.38 16 38 H 0.11 1.35 8.07 -2.39 -0.02 1.33 16 39 H 0.06 1.45 7.42 -2.39 -0.02 1.44 16 40 H 0.04 1.14 6.55 -2.39 -0.02 1.12 16 41 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.10 1.98 7.93 -2.39 -0.02 1.96 16 43 H 0.04 0.87 8.12 -2.39 -0.02 0.85 16 44 H 0.07 2.32 6.47 -2.38 -0.02 2.30 16 45 H 0.06 2.52 5.82 -2.39 -0.01 2.50 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 47 H 0.12 3.53 7.93 -2.39 -0.02 3.51 16 48 H 0.06 2.10 8.12 -2.39 -0.02 2.08 16 49 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 50 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 51 H 0.07 0.99 7.44 -2.39 -0.02 0.97 16 52 H 0.13 0.41 7.23 -2.39 -0.02 0.39 16 Total: -1.00 -81.94 412.66 0.94 -81.00 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.18 Total: 31.51 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 7.87 Total: 23.66 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -7.94 Total: -116.81 kcal Atomic # 8 Polarization: -63.67 SS G_CDS: -1.19 Total: -64.86 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -81.94 0.94 -81.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570202512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.488 kcal (2) G-P(sol) polarization free energy of solvation -81.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds