Wall clock time and date at job start Wed Apr 1 2020 00:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.54297 * 2 1 4 4 C 1.54105 * 110.48310 * 237.38291 * 2 1 3 5 5 O 1.43746 * 107.42259 * 243.27831 * 4 2 1 6 6 C 1.44586 * 106.86832 * 333.67423 * 5 4 2 7 7 H 1.09003 * 110.63637 * 281.31590 * 6 5 4 8 8 C 1.50700 * 110.64084 * 158.44402 * 6 5 4 9 9 O 1.21275 * 119.99906 * 0.79478 * 8 6 5 10 10 N 1.34777 * 119.99772 * 180.80273 * 8 6 5 11 11 C 1.46498 * 120.00280 * 359.97438 * 10 8 6 12 12 C 1.46499 * 119.99741 * 180.02562 * 10 8 6 13 13 C 1.52998 * 109.47323 * 89.99622 * 12 10 8 14 14 C 1.53000 * 109.46938 * 180.02562 * 13 12 10 15 15 N 1.46901 * 109.47327 * 180.02562 * 14 13 12 16 16 C 1.46904 * 110.99609 * 293.95204 * 15 14 13 17 17 C 1.46897 * 111.00294 * 170.00167 * 15 14 13 18 18 C 1.50699 * 109.46808 * 190.00120 * 17 15 14 19 19 O 1.21284 * 120.00210 * 359.97438 * 18 17 15 20 20 N 1.34782 * 119.99678 * 179.97438 * 18 17 15 21 21 C 1.37100 * 119.99944 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99945 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99924 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99970 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99807 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47241 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46801 * 120.00302 * 25 23 21 28 28 H 1.48501 * 109.47464 * 240.00141 * 25 23 21 29 29 C 1.54807 * 110.49016 * 122.62074 * 2 1 3 30 30 H 1.09004 * 109.47191 * 181.16482 * 1 2 3 31 31 H 1.09001 * 109.46623 * 301.16054 * 1 2 3 32 32 H 1.08996 * 109.47263 * 61.15924 * 1 2 3 33 33 H 1.09002 * 109.88076 * 2.77922 * 4 2 1 34 34 H 1.08996 * 109.87584 * 123.78037 * 4 2 1 35 35 H 1.08998 * 109.46716 * 89.99819 * 11 10 8 36 36 H 1.08993 * 109.47544 * 210.00482 * 11 10 8 37 37 H 1.09002 * 109.47107 * 330.00492 * 11 10 8 38 38 H 1.09004 * 109.46832 * 210.00234 * 12 10 8 39 39 H 1.09001 * 109.47038 * 329.98899 * 12 10 8 40 40 H 1.08996 * 109.46885 * 299.99833 * 13 12 10 41 41 H 1.09001 * 109.47051 * 60.00115 * 13 12 10 42 42 H 1.09003 * 109.47446 * 299.99851 * 14 13 12 43 43 H 1.09004 * 109.47548 * 59.99797 * 14 13 12 44 44 H 1.09008 * 109.46924 * 60.00086 * 16 15 14 45 45 H 1.08996 * 109.47035 * 179.97438 * 16 15 14 46 46 H 1.09002 * 109.47533 * 299.99932 * 16 15 14 47 47 H 1.09001 * 109.46826 * 309.99676 * 17 15 14 48 48 H 1.08992 * 109.47280 * 69.99607 * 17 15 14 49 49 H 0.96999 * 119.99973 * 359.97438 * 20 18 17 50 50 H 0.97002 * 119.99822 * 180.02562 * 24 23 21 51 51 H 1.09007 * 110.90637 * 257.75643 * 29 2 1 52 52 H 1.08999 * 110.90759 * 21.34899 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0206 0.0000 4 6 2.0693 -0.7781 -1.2159 5 8 2.7976 -1.9110 -0.7135 6 6 3.2660 -1.5562 0.6076 7 1 4.1464 -0.9167 0.5442 8 6 3.5674 -2.7930 1.4143 9 8 3.4180 -3.8904 0.9203 10 7 4.0028 -2.6793 2.6847 11 6 4.1837 -1.3536 3.2813 12 6 4.2963 -3.8816 3.4687 13 6 5.7621 -4.2736 3.2718 14 6 6.0683 -5.5296 4.0901 15 7 7.4758 -5.9058 3.9016 16 6 7.7285 -6.3215 2.5155 17 6 7.8707 -6.9583 4.8472 18 6 9.3652 -7.1450 4.7956 19 8 10.0353 -6.4681 4.0448 20 7 9.9571 -8.0641 5.5840 21 6 11.3166 -8.2342 5.5368 22 1 11.9134 -7.6315 4.8682 23 6 11.9269 -9.1814 6.3499 24 7 11.2008 -9.9144 7.1638 25 14 13.7792 -9.4138 6.2850 26 1 14.3617 -8.4735 5.2942 27 1 14.3594 -9.1423 7.6249 28 1 14.0894 -10.8098 5.8849 29 6 2.0719 -0.7817 1.2214 30 1 -0.3634 -1.0275 0.0209 31 1 -0.3632 0.5318 0.8794 32 1 -0.3633 0.4957 -0.9002 33 1 1.2399 -1.1166 -1.8370 34 1 2.7329 -0.1401 -1.7996 35 1 3.2570 -1.0429 3.7638 36 1 4.9829 -1.3941 4.0213 37 1 4.4456 -0.6374 2.5025 38 1 4.1124 -3.6809 4.5242 39 1 3.6542 -4.6975 3.1369 40 1 5.9458 -4.4743 2.2164 41 1 6.4041 -3.4577 3.6037 42 1 5.8844 -5.3294 5.1457 43 1 5.4262 -6.3454 3.7578 44 1 7.4932 -5.4984 1.8406 45 1 8.7778 -6.5941 2.4035 46 1 7.1019 -7.1801 2.2736 47 1 7.5751 -6.6700 5.8559 48 1 7.3783 -7.8925 4.5773 49 1 9.4211 -8.6051 6.1847 50 1 11.6269 -10.5754 7.7317 51 1 2.4104 -0.0992 2.0011 52 1 1.3198 -1.4693 1.6080 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570202513.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:59 Heat of formation + Delta-G solvation = -108.122063 kcal Electronic energy + Delta-G solvation = -29697.613190 eV Core-core repulsion = 25504.536496 eV Total energy + Delta-G solvation = -4193.076694 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.87212 -39.12607 -38.56039 -36.82833 -35.86087 -34.01777 -33.85590 -32.51482 -31.20113 -30.42696 -27.90123 -27.38417 -26.88696 -26.30014 -24.94009 -23.92540 -22.54384 -21.07493 -20.70112 -19.53993 -19.07959 -17.92814 -17.79049 -17.03165 -16.58348 -15.96634 -15.87215 -15.62694 -15.26545 -15.12002 -14.77656 -14.55746 -14.28360 -14.18351 -13.90018 -13.63273 -13.36282 -13.31701 -13.23135 -13.18314 -13.03690 -12.79018 -12.20555 -12.13134 -11.96893 -11.96346 -11.69360 -11.55956 -11.49920 -11.42245 -11.29992 -11.20319 -11.12246 -10.88046 -10.51633 -10.31610 -10.24852 -10.19110 -9.82739 -9.45047 -8.99503 -8.38811 -7.93456 -7.78017 -6.38367 -3.78882 2.27820 2.44299 3.18673 3.28932 3.36384 3.47855 3.80345 3.95354 4.05225 4.07443 4.21953 4.29748 4.44778 4.51063 4.62930 4.71624 4.84799 4.88169 4.93173 5.02646 5.10624 5.13251 5.16827 5.20723 5.24408 5.25570 5.29098 5.33771 5.35306 5.41819 5.47252 5.56883 5.67652 5.68125 5.78805 5.83304 5.99147 6.05566 6.07310 6.17967 6.26719 6.34219 6.37684 6.66961 7.00975 7.36258 7.47877 7.58812 7.88348 8.10787 8.66217 9.22118 9.58852 10.11116 10.79594 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.036242 B = 0.001551 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.400977 B =18049.324337 C =18241.205705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 H 0.088 0.912 4 C 0.046 3.954 5 O -0.346 6.346 6 C 0.059 3.941 7 H 0.096 0.904 8 C 0.518 3.482 9 O -0.514 6.514 10 N -0.613 5.613 11 C 0.073 3.927 12 C 0.118 3.882 13 C -0.130 4.130 14 C 0.058 3.942 15 N -0.519 5.519 16 C 0.021 3.979 17 C 0.046 3.954 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.566 5.566 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C -0.141 4.141 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.014 0.986 47 H 0.087 0.913 48 H 0.047 0.953 49 H 0.392 0.608 50 H 0.270 0.730 51 H 0.091 0.909 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.385 21.244 -8.241 32.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 H 0.106 0.894 4 C -0.031 4.031 5 O -0.264 6.264 6 C -0.002 4.002 7 H 0.114 0.886 8 C 0.305 3.695 9 O -0.388 6.388 10 N -0.348 5.348 11 C -0.070 4.070 12 C -0.005 4.005 13 C -0.169 4.169 14 C -0.071 4.071 15 N -0.243 5.243 16 C -0.127 4.127 17 C -0.086 4.086 18 C 0.231 3.769 19 O -0.461 6.461 20 N -0.203 5.203 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.179 4.179 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.079 0.921 45 H 0.113 0.887 46 H 0.032 0.968 47 H 0.105 0.895 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.109 0.891 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.631 21.164 -8.916 32.242 hybrid contribution 0.107 -0.920 0.445 1.028 sum -22.524 20.244 -8.471 31.447 Atomic orbital electron populations 1.21832 0.93569 1.02518 1.02227 1.22552 0.97447 1.00093 0.94415 0.89412 1.23368 0.95972 0.87889 0.95908 1.89089 1.71881 1.36884 1.28584 1.23004 0.98362 0.94034 0.84752 0.88603 1.20159 0.77277 0.90414 0.81689 1.90747 1.50781 1.27834 1.69435 1.47748 1.66591 1.07708 1.12752 1.21960 1.02112 0.83505 0.99445 1.21500 0.96861 0.87071 0.95053 1.21923 0.95168 0.98371 1.01456 1.22029 0.88962 0.96157 0.99948 1.61570 1.18037 1.39901 1.04752 1.22560 1.03721 0.98092 0.88282 1.21861 0.96059 0.93475 0.97174 1.19764 0.88566 0.83829 0.84788 1.90480 1.65096 1.48498 1.42024 1.41879 1.08237 1.33436 1.36740 1.19753 0.82433 1.18706 1.21801 0.87883 1.25250 1.00467 0.96200 0.96082 1.69623 1.36204 1.23612 1.24986 0.85807 0.82343 0.78124 0.78105 1.19240 1.20791 1.20810 1.23285 0.97145 0.99168 0.98303 0.92071 0.92128 0.92104 0.89309 0.91953 0.92224 0.90222 0.91096 0.90144 0.89809 0.91283 0.90820 0.90902 0.95011 0.92116 0.88726 0.96767 0.89464 0.93515 0.77514 0.91987 0.89075 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.59 8.92 37.16 0.33 -0.26 16 2 C -0.13 -0.59 3.65 -89.09 -0.32 -0.92 16 3 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 4 C 0.05 0.31 7.36 37.73 0.28 0.59 16 5 O -0.35 -3.90 10.82 -54.26 -0.59 -4.49 16 6 C 0.06 0.52 2.81 -26.83 -0.08 0.44 16 7 H 0.10 0.65 7.33 -51.93 -0.38 0.27 16 8 C 0.52 6.01 7.12 -10.99 -0.08 5.94 16 9 O -0.51 -8.44 16.15 -13.47 -0.22 -8.65 16 10 N -0.61 -5.49 2.87 -181.58 -0.52 -6.01 16 11 C 0.07 0.36 8.98 59.85 0.54 0.90 16 12 C 0.12 1.14 5.41 -4.04 -0.02 1.12 16 13 C -0.13 -1.56 5.46 -26.73 -0.15 -1.71 16 14 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 15 N -0.52 -9.11 4.50 -244.37 -1.10 -10.21 16 16 C 0.02 0.38 8.96 60.07 0.54 0.92 16 17 C 0.05 0.85 5.45 -4.98 -0.03 0.82 16 18 C 0.45 10.77 7.48 -10.98 -0.08 10.69 16 19 O -0.58 -15.88 13.91 5.55 0.08 -15.80 16 20 N -0.57 -14.61 5.29 -10.96 -0.06 -14.66 16 21 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 25 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 29 C -0.14 -0.77 5.33 -24.73 -0.13 -0.91 16 30 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.09 0.55 7.69 -51.93 -0.40 0.15 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.20 7.70 -51.93 -0.40 -0.20 16 36 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 37 H 0.07 0.25 6.02 -51.93 -0.31 -0.06 16 38 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 39 H 0.08 0.94 7.42 -51.93 -0.39 0.55 16 40 H 0.07 0.98 6.55 -51.93 -0.34 0.64 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 43 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 44 H 0.06 1.00 6.47 -51.92 -0.34 0.67 16 45 H 0.09 2.00 5.82 -51.93 -0.30 1.70 16 46 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.09 1.44 7.93 -51.93 -0.41 1.03 16 48 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 49 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 51 H 0.09 0.28 6.53 -51.93 -0.34 -0.06 16 52 H 0.08 0.55 7.77 -51.93 -0.40 0.15 16 LS Contribution 412.42 15.07 6.22 6.22 Total: -1.00 -35.97 412.42 -8.85 -44.82 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -8.90 Total: 6.32 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 0.54 Total: 10.31 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.96 Total: -54.98 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.73 Total: -28.94 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.97 -8.85 -44.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570202513.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.300 kcal (2) G-P(sol) polarization free energy of solvation -35.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds