Wall clock time and date at job start Wed Apr 1 2020 00:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.54297 * 2 1 4 4 C 1.54105 * 110.48310 * 237.38291 * 2 1 3 5 5 O 1.43746 * 107.42259 * 243.27831 * 4 2 1 6 6 C 1.44586 * 106.86832 * 333.67423 * 5 4 2 7 7 H 1.09003 * 110.63637 * 281.31590 * 6 5 4 8 8 C 1.50700 * 110.64084 * 158.44402 * 6 5 4 9 9 O 1.21275 * 119.99906 * 0.79478 * 8 6 5 10 10 N 1.34777 * 119.99772 * 180.80273 * 8 6 5 11 11 C 1.46498 * 120.00280 * 359.97438 * 10 8 6 12 12 C 1.46499 * 119.99741 * 180.02562 * 10 8 6 13 13 C 1.52998 * 109.47323 * 89.99622 * 12 10 8 14 14 C 1.53000 * 109.46938 * 180.02562 * 13 12 10 15 15 N 1.46901 * 109.47327 * 180.02562 * 14 13 12 16 16 C 1.46904 * 110.99609 * 293.95204 * 15 14 13 17 17 C 1.46897 * 111.00294 * 170.00167 * 15 14 13 18 18 C 1.50699 * 109.46808 * 190.00120 * 17 15 14 19 19 O 1.21284 * 120.00210 * 359.97438 * 18 17 15 20 20 N 1.34782 * 119.99678 * 179.97438 * 18 17 15 21 21 C 1.37100 * 119.99944 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99945 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99924 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99970 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99807 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47241 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46801 * 120.00302 * 25 23 21 28 28 H 1.48501 * 109.47464 * 240.00141 * 25 23 21 29 29 C 1.54807 * 110.49016 * 122.62074 * 2 1 3 30 30 H 1.09004 * 109.47191 * 181.16482 * 1 2 3 31 31 H 1.09001 * 109.46623 * 301.16054 * 1 2 3 32 32 H 1.08996 * 109.47263 * 61.15924 * 1 2 3 33 33 H 1.09002 * 109.88076 * 2.77922 * 4 2 1 34 34 H 1.08996 * 109.87584 * 123.78037 * 4 2 1 35 35 H 1.08998 * 109.46716 * 89.99819 * 11 10 8 36 36 H 1.08993 * 109.47544 * 210.00482 * 11 10 8 37 37 H 1.09002 * 109.47107 * 330.00492 * 11 10 8 38 38 H 1.09004 * 109.46832 * 210.00234 * 12 10 8 39 39 H 1.09001 * 109.47038 * 329.98899 * 12 10 8 40 40 H 1.08996 * 109.46885 * 299.99833 * 13 12 10 41 41 H 1.09001 * 109.47051 * 60.00115 * 13 12 10 42 42 H 1.09003 * 109.47446 * 299.99851 * 14 13 12 43 43 H 1.09004 * 109.47548 * 59.99797 * 14 13 12 44 44 H 1.09008 * 109.46924 * 60.00086 * 16 15 14 45 45 H 1.08996 * 109.47035 * 179.97438 * 16 15 14 46 46 H 1.09002 * 109.47533 * 299.99932 * 16 15 14 47 47 H 1.09001 * 109.46826 * 309.99676 * 17 15 14 48 48 H 1.08992 * 109.47280 * 69.99607 * 17 15 14 49 49 H 0.96999 * 119.99973 * 359.97438 * 20 18 17 50 50 H 0.97002 * 119.99822 * 180.02562 * 24 23 21 51 51 H 1.09007 * 110.90637 * 257.75643 * 29 2 1 52 52 H 1.08999 * 110.90759 * 21.34899 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0206 0.0000 4 6 2.0693 -0.7781 -1.2159 5 8 2.7976 -1.9110 -0.7135 6 6 3.2660 -1.5562 0.6076 7 1 4.1464 -0.9167 0.5442 8 6 3.5674 -2.7930 1.4143 9 8 3.4180 -3.8904 0.9203 10 7 4.0028 -2.6793 2.6847 11 6 4.1837 -1.3536 3.2813 12 6 4.2963 -3.8816 3.4687 13 6 5.7621 -4.2736 3.2718 14 6 6.0683 -5.5296 4.0901 15 7 7.4758 -5.9058 3.9016 16 6 7.7285 -6.3215 2.5155 17 6 7.8707 -6.9583 4.8472 18 6 9.3652 -7.1450 4.7956 19 8 10.0353 -6.4681 4.0448 20 7 9.9571 -8.0641 5.5840 21 6 11.3166 -8.2342 5.5368 22 1 11.9134 -7.6315 4.8682 23 6 11.9269 -9.1814 6.3499 24 7 11.2008 -9.9144 7.1638 25 14 13.7792 -9.4138 6.2850 26 1 14.3617 -8.4735 5.2942 27 1 14.3594 -9.1423 7.6249 28 1 14.0894 -10.8098 5.8849 29 6 2.0719 -0.7817 1.2214 30 1 -0.3634 -1.0275 0.0209 31 1 -0.3632 0.5318 0.8794 32 1 -0.3633 0.4957 -0.9002 33 1 1.2399 -1.1166 -1.8370 34 1 2.7329 -0.1401 -1.7996 35 1 3.2570 -1.0429 3.7638 36 1 4.9829 -1.3941 4.0213 37 1 4.4456 -0.6374 2.5025 38 1 4.1124 -3.6809 4.5242 39 1 3.6542 -4.6975 3.1369 40 1 5.9458 -4.4743 2.2164 41 1 6.4041 -3.4577 3.6037 42 1 5.8844 -5.3294 5.1457 43 1 5.4262 -6.3454 3.7578 44 1 7.4932 -5.4984 1.8406 45 1 8.7778 -6.5941 2.4035 46 1 7.1019 -7.1801 2.2736 47 1 7.5751 -6.6700 5.8559 48 1 7.3783 -7.8925 4.5773 49 1 9.4211 -8.6051 6.1847 50 1 11.6269 -10.5754 7.7317 51 1 2.4104 -0.0992 2.0011 52 1 1.3198 -1.4693 1.6080 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570202513.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:54 Heat of formation + Delta-G solvation = -134.391292 kcal Electronic energy + Delta-G solvation = -29698.752310 eV Core-core repulsion = 25504.536496 eV Total energy + Delta-G solvation = -4194.215813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.57132 -40.40394 -39.76153 -38.21835 -36.82610 -35.88101 -34.51454 -33.50498 -33.23693 -31.13437 -29.40172 -28.14409 -27.47795 -27.13845 -26.59594 -24.97718 -23.52601 -21.85591 -21.50569 -20.98794 -20.23556 -19.84244 -18.57222 -17.89239 -17.62467 -17.22099 -16.72576 -16.66148 -16.55544 -16.23528 -16.17254 -15.78035 -15.53263 -15.27396 -14.98298 -14.74424 -14.65069 -14.42327 -13.95613 -13.78408 -13.63393 -13.51556 -13.49462 -13.31735 -13.15251 -13.00947 -12.86530 -12.70247 -12.63428 -12.53098 -12.39177 -12.29088 -12.10972 -12.08552 -11.93592 -11.65947 -11.55345 -11.46185 -10.91807 -10.59504 -10.29016 -9.99431 -9.72651 -9.23812 -8.46069 -5.94610 1.36693 1.41752 1.46399 1.56088 1.76283 2.05928 2.28999 2.76105 2.96023 3.20670 3.28801 3.41948 3.56544 3.81115 3.89662 3.99624 4.03057 4.10254 4.15015 4.21765 4.29512 4.36876 4.39054 4.44300 4.52389 4.56287 4.57843 4.59053 4.64545 4.70313 4.73390 4.73591 4.79197 4.81554 4.90862 4.95023 5.02508 5.06905 5.13465 5.16005 5.26545 5.35799 5.41923 5.50313 5.79227 5.88554 6.05412 6.20104 6.31041 6.61784 7.08625 7.13938 7.57253 8.13520 8.71623 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.036242 B = 0.001551 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.400977 B =18049.324337 C =18241.205705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 H 0.113 0.887 4 C 0.036 3.964 5 O -0.392 6.392 6 C 0.057 3.943 7 H 0.117 0.883 8 C 0.508 3.492 9 O -0.578 6.578 10 N -0.607 5.607 11 C 0.062 3.938 12 C 0.121 3.879 13 C -0.119 4.119 14 C 0.060 3.940 15 N -0.536 5.536 16 C 0.029 3.971 17 C 0.057 3.943 18 C 0.441 3.559 19 O -0.615 6.615 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.272 1.272 29 C -0.133 4.133 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.036 0.964 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.022 0.978 47 H 0.116 0.884 48 H 0.064 0.936 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.124 0.876 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.417 23.369 -6.607 34.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 H 0.131 0.869 4 C -0.040 4.040 5 O -0.311 6.311 6 C -0.004 4.004 7 H 0.135 0.865 8 C 0.296 3.704 9 O -0.457 6.457 10 N -0.340 5.340 11 C -0.079 4.079 12 C -0.002 4.002 13 C -0.158 4.158 14 C -0.068 4.068 15 N -0.260 5.260 16 C -0.119 4.119 17 C -0.074 4.074 18 C 0.228 3.772 19 O -0.501 6.501 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.170 4.170 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.133 0.867 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.093 0.907 42 H 0.117 0.883 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.041 0.959 47 H 0.134 0.866 48 H 0.082 0.918 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.143 0.857 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.691 23.326 -7.239 34.026 hybrid contribution 0.398 -1.541 -0.084 1.594 sum -23.293 21.784 -7.323 32.722 Atomic orbital electron populations 1.21831 0.93239 1.01735 1.03264 1.22573 0.97657 1.00775 0.92725 0.86869 1.23594 0.96017 0.87330 0.97060 1.89048 1.72713 1.39282 1.30025 1.23195 1.00398 0.92944 0.83836 0.86523 1.20856 0.76482 0.90611 0.82440 1.90707 1.53810 1.30216 1.70966 1.47864 1.65017 1.09148 1.11980 1.22310 1.03836 0.81538 1.00195 1.21443 0.94651 0.87237 0.96856 1.21800 0.96836 0.97874 0.99288 1.22136 0.86241 0.96639 1.01787 1.61543 1.21020 1.39458 1.03959 1.22376 1.01405 0.98780 0.89314 1.21759 0.91612 0.94905 0.99102 1.20790 0.90964 0.82296 0.83130 1.90459 1.66832 1.49635 1.43223 1.41937 1.07665 1.34178 1.37420 1.19696 0.83746 1.19904 1.22862 0.90407 1.26023 1.04739 0.95280 0.95182 1.69678 1.37856 1.23635 1.24995 0.84871 0.76966 0.78161 0.78323 1.19898 1.19467 1.19689 1.23307 0.95414 0.99034 0.99266 0.93790 0.90873 0.91285 0.89613 0.90737 0.89688 0.89378 0.89431 0.86739 0.91762 0.94273 0.90680 0.88271 0.94617 0.91316 0.92448 0.95913 0.86571 0.91842 0.77002 0.91324 0.85733 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.92 71.98 0.64 -0.27 16 2 C -0.12 -0.84 3.65 -9.80 -0.04 -0.88 16 3 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 4 C 0.04 0.47 7.36 72.36 0.53 1.00 16 5 O -0.39 -9.04 10.82 -130.78 -1.42 -10.45 16 6 C 0.06 0.93 2.81 30.53 0.09 1.01 16 7 H 0.12 1.35 7.33 -2.39 -0.02 1.33 16 8 C 0.51 11.83 7.12 87.66 0.62 12.46 16 9 O -0.58 -20.11 16.15 15.18 0.25 -19.86 16 10 N -0.61 -9.95 2.87 -846.78 -2.43 -12.39 16 11 C 0.06 0.40 8.98 127.77 1.15 1.55 16 12 C 0.12 2.16 5.41 86.38 0.47 2.63 16 13 C -0.12 -2.73 5.46 30.59 0.17 -2.57 16 14 C 0.06 1.48 4.96 86.30 0.43 1.91 16 15 N -0.54 -18.40 4.50 -927.04 -4.17 -22.57 16 16 C 0.03 1.08 8.96 127.69 1.14 2.22 16 17 C 0.06 2.06 5.45 85.56 0.47 2.53 16 18 C 0.44 21.63 7.48 87.66 0.66 22.28 16 19 O -0.62 -34.98 13.91 -3.04 -0.04 -35.02 16 20 N -0.57 -30.11 5.29 -306.98 -1.62 -31.73 16 21 C -0.33 -19.22 9.68 84.04 0.81 -18.41 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 24 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 25 Si 0.99 43.54 29.55 68.60 2.03 45.57 16 26 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 29 C -0.13 -1.15 5.33 31.89 0.17 -0.98 16 30 H 0.04 0.43 8.13 -2.38 -0.02 0.41 16 31 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.09 1.09 7.69 -2.39 -0.02 1.07 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 0.18 7.70 -2.39 -0.02 0.16 16 36 H 0.09 0.48 8.07 -2.39 -0.02 0.46 16 37 H 0.09 0.30 6.02 -2.39 -0.01 0.28 16 38 H 0.11 1.28 8.07 -2.39 -0.02 1.26 16 39 H 0.06 1.43 7.42 -2.39 -0.02 1.42 16 40 H 0.04 1.13 6.55 -2.39 -0.02 1.12 16 41 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.10 1.97 7.93 -2.39 -0.02 1.95 16 43 H 0.04 0.88 8.12 -2.38 -0.02 0.86 16 44 H 0.07 2.35 6.47 -2.38 -0.02 2.33 16 45 H 0.06 2.53 5.82 -2.39 -0.01 2.52 16 46 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.12 3.53 7.93 -2.39 -0.02 3.52 16 48 H 0.06 2.10 8.12 -2.39 -0.02 2.08 16 49 H 0.40 19.65 7.90 -92.71 -0.73 18.92 16 50 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 51 H 0.12 0.21 6.53 -2.38 -0.02 0.20 16 52 H 0.07 0.83 7.77 -2.39 -0.02 0.81 16 Total: -1.00 -82.84 412.42 0.83 -82.02 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.18 Total: 30.05 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: 7.78 Total: 24.28 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -7.95 Total: -116.58 kcal Atomic # 8 Polarization: -64.13 SS G_CDS: -1.21 Total: -65.34 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -82.84 0.83 -82.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570202513.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.375 kcal (2) G-P(sol) polarization free energy of solvation -82.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds